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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 947 fasta sequence
[CCTCCCTCTTCCCCCCTCCTTCTCGAGCCTCCGGCGACGACGACGACTCCCGCCGCTCTTCCTGGTCCATCGGCGGCGAACTTCCCCGCCGACGTGCCAGATCTCAAACCCCACTAGCTCCTCCGGCGAAGGCGGGGGACCAGAGGATGATGGGGAGCAACAGCGCAGGCGGAGGCGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTATCTGTGCTGATTGATTCCTCTGTGTGAAACCTGTTTTAAATTGCCTGGTGGATCCTTGACAGCTGAAAACTAA]
[+] EMBL AK103717 [CCTCCCTCTTCCCCCCTCCTTCTCGAGCCTCCGGCGACGACGACGACTCCCGCCGCTCTTCCTGGTCCATCGGCGGCGAACTTCCCCGCCGACGTGCCAGATCTCAAACCCCACTAGCTCCTCCGGCGAAGGCGGGGGACCAGAGGATGATGGGGAGCAACAGCGCAGGCGGAGGCGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTATCTGTGCTGATTGATTCCTCTGTGTGAAACCTGTTTTAAATTGCCTGGTGGATCCTTGACAGCTGAAAACTAA]
[+] EMBL AK064713 [ AACAGCGCAGGCGGAGGCGGCGGTGACGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTC ]
[+] EMBL BP184747 [ GCGCAGGCGGAGGCGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTT ]
[+] EMBL CB665349 [ AGGCGGACGCGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTATCTGTGCTGATTGATTCCTCTGTGTGAAACCTGTTTTAAATTGCCTGGTGGATCC ]
[-] EMBL CB665350 [ GGCATGGGGGGAGGAGGGCCCATGGGGGCAGCCCCCCCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCCCCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCCCTGGTTGCTTCTGTACTTAGTATGAAGTACTATCTGTGCTGATTGATTCCTCTGTGTGAAACCTGTTTTAAATTGCCTGGTGGATCCT ]
consensusID : consensus_10740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence
[TGGCTCTTGCGTGAGCCGTCCTATTACGCAGCAGCCATTGCAGCCGGATCTTCCTGGGAGCATCCTGTCCACGAGCATCCGTACCAAGCCACGGTAGGTGAGACCGGAGTAGCTGATCGCGGGTCAAGGAAGGGGGACCAAAACATACACGGGCAACGACAAGGCAGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGCAGCCGCCGGCGGCGGCGGCGGCGGCGGCGACGGGCGGCACGACGACGAGGCGGTTCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCCACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCGGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAA-CAGGGACTATGTAAGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTAAAAAAAAAAAAA]
[+] EMBL BE041013 [TGGCTCTTGCGTGAGCCGTCCTATTACGCAGCAGCCATTGCAGCCGGATCTTCCTGGGAGCATCCTGTCCACGAGCATCCGTACCAAGCCACGGTAGGTGAGACCGGAGTAGCTGATCGCGGGTCAAGGAAGGGGGACCAAAACATACACGGGCAACGACAAGGCAGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGCAGCCGCCGGCGGCGGCGGCGGCGGCGGCGACGGGCGGCACGACGACGAGGCGGTTCTCACCGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCACTACCTTGGCCGCAGCGGCTTCCACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCGGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAA CAGGGACTATGTAAGGAGCATGCAAA GAATGACCATGT GG ATCCTTA CCAACCTTA TACAG ATGC AATGAATGAACCTG CA CAT CTTA CGA CTTA TACAA CTGA GTCTG TCCTTGA ATACTATTGA CATT ]
[+] EMBL CA998136 [ ACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGTAGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAGGGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTTAACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGAGTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCAACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTAAAAAAAAAAAAA]
[+] EMBL CA764372 [ AATGAATGACCGTGTTGGCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCGACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAATAGTCTAATACCACTGGTTGCTTCTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10740#0 CCTCCCTCTTCCCCCCTCCTTCTCGAGCC-TCCGGCGACG--ACGACGACTCCCGCCGC- 56
consensus_10740#1 ------------TGGCTCTTGCGTGAGCCGTCCTATTACGCAGCAGCCATTGCAGCCGGA 48
*** * * ***** *** *** * * * * * ****
consensus_10740#0 TCTTCCTGGTC-CATC--GGCGGCGAACTTCCCCGCCGACGTGCCAGATCTCAAACCCCA 113
consensus_10740#1 TCTTCCTGGGAGCATCCTGTCCACGAGCATCCGTACCAAGCCACGGTAGGTGAGACCGGA 108
********* **** * * *** * *** ** * * * * * *** *
consensus_10740#0 CTAGCTCCTC-CGG--CGAAGGCGGGGGACCAGAGGATG-ATGGGGAGCAACAGCGCAGG 169
consensus_10740#1 GTAGCTGATCGCGGGTCAAGGAAGGGGGACCAAAACATACACGGGCAACGACAAGGCAG- 167
***** ** *** * * * ********* * ** * *** * * *** ****
consensus_10740#0 CGGAGGCGGCGGTGGCGCCATGGTTCCGGGGGGCATGGGGGGAGGAGGGCCCATGGGGGC 229
consensus_10740#1 --------GCGGTGGCGCCATGGTTCCGGGGGGCATGGGGG------------------C 201
********************************* *
consensus_10740#0 AGCCGCCGCCGGCGGCGGCGGCGGCGGAGACGGGCGGCACGACGACGAGGCGGTCCTCAC 289
consensus_10740#1 AGCCGCCGGCGGCGGCGGCGGCGGCGGCGACGGGCGGCACGACGACGAGGCGGTTCTCAC 261
******** ****************** ************************** *****
consensus_10740#0 CGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCA 349
consensus_10740#1 CGAGTTCCTCTCCTCCCTCATGGACTACACCCCTACGATTCCCGACGAGCTGGTGGAGCA 321
************************************************************
consensus_10740#0 CTACCTTGGCCGCAGCGGCTTCTACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGT 409
consensus_10740#1 CTACCTTGGCCGCAGCGGCTTCCACTGCCCCGACCTCCGCCTAACGAGGCTGGTTGCTGT 381
********************** *************************************
consensus_10740#0 AGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAG 469
consensus_10740#1 AGCCACCCAAAAGTTCATTTCGGACATTGCAAGCGACTCTCTTCAGCACTGCAAAGCCAG 441
************************************************************
consensus_10740#0 GGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTT 529
consensus_10740#1 GGTAGCAGCACCTATCAAAGATAACAAGAGCAAGCAACCTAAGGATAGGCGTCTTGTGTT 501
************************************************************
consensus_10740#0 AACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGA 589
consensus_10740#1 AACAATGGATGATCTTTCCAAGGCCTTGCAAGAGCACGGTGTGAACTTGAAACATCCTGA 561
************************************************************
consensus_10740#0 GTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCAGCAAGAGAAGAGTAGACTCA 649
consensus_10740#1 GTACTTCGCAGACAGCCCTTCTGCAGGAATGGCTCCTGCGGCAAGAGAAGAGTAGACTCA 621
*************************************** ********************
consensus_10740#0 ACTGAACTCAAAGTGAAACCAGGGACTATGTAGGGAGCATGCAAATGAATGACCATGTCG 709
consensus_10740#1 ACTGAACTCAAAGTGAAAC-AGGGACTATGTAAGGAGCATGCAAATGAATGACCATGTCG 680
******************* ************ ***************************
consensus_10740#0 GCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCG 769
consensus_10740#1 GCATCCTTACCCAACCTTATTACAGCATGCAAATGAATGAACCTGTCAGCATCCTTACCG 740
************************************************************
consensus_10740#0 ACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAA 829
consensus_10740#1 ACCTTATTACAACCTGATGTCTGTTCCTTGATATACTATTGACCATTAGCTTGTAACTAA 800
************************************************************
consensus_10740#0 TAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTATCTGTGCTGATTGAT 889
consensus_10740#1 TAGTCTAATACCACTGGTTGCTTCTGTACTTAGTATGAAGTACTAAAAAAAAAAAAA--- 857
********************************************* *
consensus_10740#0 TCCTCTGTGTGAAACCTGTTTTAAATTGCCTGGTGGATCCTTGACAGCTGAAAACTAA 947
consensus_10740#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||