These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1229 fasta sequence [GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACCATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAGATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGGATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA-CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCGGCGGAGGAAGCAGTCGCCGCCGCCGTCGTCGACGAGGAGATGCAGGAGGCCGAGACGGACAAGAAG] [+] EMBL AK119748 [GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACCATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAGATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGGATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGTAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCGGCG ] [+] EMBL CB650320 [ GCTTACCTTACAAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCCCCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCCTCGAAGATCACCTCACTCCCGACCTC ] [+] EMBL CB628953 [ CTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGC ] [+] EMBL CB628993 [ CTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCC ] [+] EMBL CB619376 [ AGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCGGTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGGCGTCTAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCGGCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGCCGGCGGCGGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCGGAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAGGGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCA CCCTCGAAGATCACCTCACTCCCG ] [+] EMBL AU070205 [ CGCGCAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGNGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCGGCGGAGGAAGCAGTCGCCGCCGCCGTCGTCGACGAGGAGATGCAGGAGGCCGAGACGGACAAGAAG] [+] EMBL AU070201 [ CGCGCAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGGGAAGATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGCCGACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGATGACGACAGAAGAGAAATGCGCNGCG ] consensusID : consensus_10748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence [CGCTGCACTGGATCCTCAGAAACGGCTGGCTTAGAAGGGCAGGTGGTCCGTTGGCAACTTGGCATTGCGGTTGCCTAGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTCCAAAACAAAAGAAGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTTGGAATAAGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAAGATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGCCCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGATGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAACAGGGAGTGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA] [+] EMBL BE040051 [CGCTGCACTGGATCCTCAGAAACGGCTGGCTTAGAAGGGCAGGTGGTCCGTTGGCAACTTGGCATTGCGGTTGCCTAGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTCCAAAACAAAAGAAGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTTGGAATAAGTATATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATACCTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTCACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTCTACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAAGATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGCCCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGATGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAACAGGGAGTGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10748#0 GGGCTAATGCAGCGGTTGTTTTCTTCTACCTCATCATCATTCTTATATATCTAAGTTACC 60 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 ATGTCGATCTGTTCCAAAATATAAGGGATTTTGACGATATATCTGATATATAATTAATAG 120 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 ATTCTCTCGCTATGTGTATATATATAGCTAGGTAGCTGAGCAAGCAGCTGGTCATCACGG 180 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 ATCAAGAAGAAGATTAGCTTAGCTAGCTAAAAAGTAAGTAGCCGTGCGAAGTCGCCGGCG 240 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 GTGATCAGCCGGCGATGACGACGTACAGGGTGTGCTGCTTCCTGCGGCGGTTCAGGGCGG 300 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 CGTCGAACGAGCCGTCGGAGGAGCTCGGCGACGTGTTCCAGGCGTACGCCGACGGCGGCG 360 consensus_10748#1 ------------------------------------------------------------ consensus_10748#0 GCGGCGTGATGGGGGAGGAGGCGCTGAGGCGGTTCCTCCGGGAGGTGCAGGGGGAGGCCG 420 consensus_10748#1 ------------------------------------------CGCTGCACTGGATCCTCA 18 * **** ** * consensus_10748#0 CCGGCGGC-GGCGACGACGAGCTGGAGGCGACGGCGAGGGAGGTGATGGCCTTCGCGGCG 479 consensus_10748#1 GAAACGGCTGGCTTAGAAGGGCAGGTGGT--CCGTTGGCAACTTGGCATTGCGGTTGCCT 76 **** *** ** * ** ** ** * * * * ** * * consensus_10748#0 GAGCAGAGGCTGCTCAGGAAGGGCGGCGCCGCTGCCGCCGGCGGCGGGCTCACCGTCGAG 539 consensus_10748#1 AGGCAGAGGCAACCTAGGGACCATGGATGAGCTCTCACAAGCGCCTC-CAAAACAAAAGA 135 ******** * *** * ** *** * * *** * * * * consensus_10748#0 GGCTTCCACCGCTGGCTGTGCAGCGACGCCAACGCTGCACTGGATCCTCAGAAACGGGTA 599 consensus_10748#1 AGATAAGGTCCCTGGTCATATGAGAATGGAGAACAGGTCGATGATGTT--GGAATAAGTA 193 * * * **** * * * * * *** * * ** *** consensus_10748#0 TATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATAC 659 consensus_10748#1 TATCAAGACATGGGATTGCCTCTGTCACACTACTTCATCTACACGGGGCACAACTCATAC 253 ************************************************************ consensus_10748#0 CTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCAC 719 consensus_10748#1 CTGACGGGGAACCAGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGTGAAGGCCCTCCAC 313 ************************************************************ consensus_10748#0 GACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAG 779 consensus_10748#1 GACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAG 373 ************************************************************ consensus_10748#0 GTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATC 839 consensus_10748#1 GTCCTCCACGGCAGGACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATC 433 ************************************************************ consensus_10748#0 AGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTC 899 consensus_10748#1 AGGGAGTACGCGTTCGTCGCCTCCCCTTACCCCGTCATCCTCACCCTCGAAGATCACCTC 493 ************************************************************ consensus_10748#0 ACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTC 959 consensus_10748#1 ACTCCCGACCTCCAATCCAAAGTCGCCAAGATGATCAAGGAGACGTTCGGTGACATGCTC 553 ************************************************************ consensus_10748#0 TACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGG-GAA 1018 consensus_10748#1 TACGTCTCTGAAACTGAGAACATGGCGGAATTCCCTTCGCCGGACGAGCTCAAGGTTGAA 613 ******************************************************* *** consensus_10748#0 GATCATCGTGTCGACGAAGCCGCCCAAGGAGTACCTCCAGACCAAGAACGACGCCGACGC 1078 consensus_10748#1 GATCATCGTGTCGACGAAGCCCGCCCAGGAGTACCTTCAGACCAAGAACGACGCCCGCGC 673 ********************* ** ********** ****************** *** consensus_10748#0 C-GACGAGGCCGGCGTCTGGGGCGAGGAGATCACCGACGACAAGGTGGCGGCGACGGCGA 1137 consensus_10748#1 CCGACCAGGCCGGCGTTTGGGGCGAGGAGATCACCGACGACAAGGTGGGGGCGACGGCGA 733 * *** ********** ******************************* *********** consensus_10748#0 TGACGACAGAAGAGAAATGCGCNGCGGC-GGAGGAAGCAGTCGCCGCCGCCGTCGTCGAC 1196 consensus_10748#1 TGACCACAGAAGAGAAAATCGCGGCTGCCGGAGGAAGAATTTCCCCCCTCCGCCTTTAAC 793 **** ************ *** ** ** ******** * * ** ** *** * * ** consensus_10748#0 GAGGAGATGCAGGAGGCCGAGACGGACAAGAAG--------------------------- 1229 consensus_10748#1 AGGGAG-TGCATGAGGGCCTAAACGCCAATAAAACCCATCACGGGGTGGAAAACAATTCA 852 **** **** **** * * * *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||