cluster # 1075

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Oryza sativa
cluster # 1075 cluster # 1075 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1075#0 length = 499 sequences # 1

consensus_1075#1 length = 376 sequences # 1

consensusID : consensus_1075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCCCAGGGGGAAATTTTTTAAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGCAAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGGGGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCCCCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAAAAGGGGGGAAACCGGTTTTCCCCAAAATCG]

[+] EMBL CF315761             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCCCAGGGGGAAATTTTTTAAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGCAAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGGGGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCCCCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAAAAGGGGGGAAACCGGTTTTCCCCAAAATCG]




>consensus_1075#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCCCAGGGGGAAATTTTTTA
AAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGCA
AAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCGG
AACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGGG
GCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAAAAAAATCCC
CCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCCCCGAAAAAAAA
ATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAAAAGGGGGGAAA
CCGGTTTTCCCCAAAATCG

consensusID : consensus_1075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCCGGGCCTTTAAATTAATTTCCCCTTTTAGGGAGTGGTTTAAAATTTAATTGCCCGTCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATTTGCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAAAAAAA]

[+] EMBL CF309313             [CAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCCGGGCCTTTAAATTAATTTCCCCTTTTAGGGAGTGGTTTAAAATTTAATTGCCCGTCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATTTGCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAAAAAAA]




>consensus_1075#1
CAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTT
TCCCTTTCCTTACCAAAGGGCAAATTCCGGGCCTTTAAATTAATTTCCCCTTTTAGGGAG
TGGTTTAAAATTTAATTGCCCGTCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTT
CCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTTGGCTTAATACCAAAAAG
GCCCCCCCCATTCCCCTTTCCAAAAATTTGCCCACCCTATCCTTCCGGAATTTAAAGGTT
AACCCCTTTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1075#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_1075#1      ------------------------------------------------------------
                                                                                  

consensus_1075#0      TTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCC-CAGGGGGAAATTTTTT 119
consensus_1075#1      --------------------------------CAGTCAGAACTACAGAGGTGGATTTAAA 28
                                                      * * ***  *  *** **   ****   

consensus_1075#0      AAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGC 179
consensus_1075#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 88
                      ****        * *         *         **     *        ******    

consensus_1075#0      AAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCG 239
consensus_1075#1      AAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCC 148
                      *****             ****    **     **     *   *****     **  * 

consensus_1075#0      GAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGG 299
consensus_1075#1      GGGCCTTTAAATTAATTTCCC----CTTTTAGGGAGTGGTTTAAAAT---TTAATTGCCC 201
                      *  **   **   **   **          *  * * *    *       ***** *   

consensus_1075#0      GGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAA-------- 351
consensus_1075#1      G--TCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTG 259
                      *   *      *  ***    * *** ******* **    ****  ** **        

consensus_1075#0      --AAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCC 409
consensus_1075#1      AAAAAAATCCCCTTTTCCCC-----AGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCC 314
                        **********    ****     *   ** **             *    *** ****

consensus_1075#0      CCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAA 469
consensus_1075#1      CCTTTCCAAAAATTT---GCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAA 371
                      **     ******     ***       * *    **        * ** *** *  ***

consensus_1075#0      AAGGGGGGAAACCGGTTTTCCCCAAAATCG 499
consensus_1075#1      AAAAA------------------------- 376
                      **