These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1722 fasta sequence [TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG-GCC-ANGT-T-CGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGG-AAAGACTCCGCCGGCGTCGTNACCGCCTACTACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGAAACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCATCCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAGTTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATTGAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTTGGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTTCCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCTTTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAGTACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTCTCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGGACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG-TGGCGAGGAACCTCG-TCATCTA-CGACTACTGC-GACG-ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA] [+] EMBL C25838 [TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG GCC ANGTNTNCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGG AAAGACTCCGCCGGCGTCGTNA ] [+] EMBL AK073731 [ CTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT T CGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGAAACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCATCCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAGTTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATTGAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTTGGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTTCCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCTTTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAGTACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTCTCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGGACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG TGGCGAGGAACCTCG TCATCTA CGACTACTGC GACG ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTA ] [+] EMBL AU172540 [ TCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGCACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAGCCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGG TGGCGAGGAACCTCG TCATCTA CGACTACTGC GACG ACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA] [+] EMBL AU082593 [ TGGGTTGGCGAGGAACCTCGTTCATTTACCGACTACTGCTGACGNACGGCAAGC GTTCCCNTCCCCGCCGGAGGAATGCTTGCTCCGGACGACCAGCTCGTGAGGCCATCG CNGCGCCGCCGCCGACGTACATGGCCGTACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATG ] [-] EMBL CF315085 [ GATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAAaa ] [+] EMBL CF315084 [ GATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACTACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCATATTCTTTTTGGATGATGAAATGGATAAAAa ] consensusID : consensus_10753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [TCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT-TCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTC-TTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG] [+] EMBL AK111340 [TCACTATCGATCGACCTCTGCTGCTGCCTCGCTGTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGT TCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTC TTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGCAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATCCAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTCGACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAAGTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG] [+] EMBL C72892 [ CGGGTGTCGAGGACGATCGAGGATGGGGTCGCTGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGTGCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCG CGACGTNTCGGCGACAACTTCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACCTCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTTCGGGTGGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACTACATGTGCTCCGACGTGGACGCGGCGCCGNACCNGAACGAGTTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGA ACCTANATCATCCAGACCAACGTGTACCGnacg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10753#0 TGCGCCTCTTGTCTCTCTGTGCTGCTCTCACTATCGATCGACCTCTGCTGCTGCCTCGCT 60 consensus_10753#1 ---------------------------TCACTATCGATCGACCTCTGCTGCTGCCTCGCT 33 ********************************* consensus_10753#0 GTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGC 120 consensus_10753#1 GTCCTCTGCTACGTGAGCTCGGCCGGCTCGGGTGTCGAGGACGATCGAGGATGGGGTCGC 93 ************************************************************ consensus_10753#0 TGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTNT 180 consensus_10753#1 TGGGGCGGCGGCCGTGGGTTGGTGGGTTGACGGCGGCGATGATTTTTGCTGTTGCTGTGT 153 ********************************************************** * consensus_10753#0 GCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAG-GCC-ANGTTCGGCGACAACT 238 consensus_10753#1 GCGGTTTCTGCTTCAGTGGGGCGTCGGCGGCGGCGGCAGCGCCGACGTTCGGCGACAACT 213 *************************************** *** * ************** consensus_10753#0 TCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACC 298 consensus_10753#1 TCGAGATCACCGGAGCCGAGGATCACGTCAAGACCTCCGCCGACGGCCAGACGTGGTACC 273 ************************************************************ consensus_10753#0 TCTACCTCGACAACAAGACTTGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGT 358 consensus_10753#1 TCTACCTCGACAACAAGACTGGCGTCGGGTTCCAGACGAAGGAGAGGTATCTCTTCGGGT 333 ******************** *************************************** consensus_10753#0 GGTTCAGCATGAACCTCAAGCTCGCCGGAAA-GACTCCGCCGGCGTCGTNACCGCCTACT 417 consensus_10753#1 GGTTCAGCATGAACCTCAAGCTCGCCGGCAACGACTCCGCCGGCGTCGTCACCGCCTACT 393 **************************** ** ***************** ********** consensus_10753#0 ACGTACGTACGATGAACTAGCTAGCTCGTCTTCTTTGTGTCAACTCCGAACTGAAACTGA 477 consensus_10753#1 AC---------------------------------------------------------- 395 ** consensus_10753#0 AACCGAGCTCCTCGACGACGGCGTAATCTGCAGATGTGCTCCGACGTGGACGCGGCGCCG 537 consensus_10753#1 ---------------------------------ATGTGCTCCGACGTGGACGCGGCGCCG 422 *************************** consensus_10753#0 CAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATC 597 consensus_10753#1 CAGCGCGACGAGCTGGACTTCGAGTTCCTGGGGAACCGGACGGGTGAGCCCTACATCATC 482 ************************************************************ consensus_10753#0 CAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTC 657 consensus_10753#1 CAGACCAACGTGTACCGCAGCGGCGTCGGCGGCCGGGAGATGCGCCACTCGCTGTGGTTC 542 ************************************************************ consensus_10753#0 GACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAA 717 consensus_10753#1 GACCCCACCGCCGACTTCCACTCCTACTCCATCCTCTGGAACCCCAAGCAGATCGTGTAA 602 ************************************************************ consensus_10753#0 GTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTGTTTCAATCGTACTCCGTGGCCAT 777 consensus_10753#1 GTGATCAACCGAACAATAGTAATCAAGCTTCTAGTTG----------------------- 639 ************************************* consensus_10753#0 CCGGGCTCGCCGGAGATAGCATCCGCCGCCGCCGCCGTCAACGACGACGACGACTACGAG 837 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TTGAATGCGCCCACCTACCTACCTACCCCTTGAAATGGGTCGCTCCGATGGCGATTAATT 897 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 GAACCTGCAGATATTGCCAAACCCTGCCGCTTGTACGAGCACTCCAGGTTGCTGCTACTT 957 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 GGCCACATTCTGTTTAGAACCAAGCAATGGCTGCCAATGCCATGCCACCACCTTCGTCTT 1017 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 CCCCGTGCCGTGCCCACCCAAATCCATTTTCTGTCAATTAATCTCGATTTCTGATGTTCT 1077 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TTGCAATGGTGGTGGTGATTGATCATCAGGTTCTTCGTGGACAAGGTGCCGATCCGCGAG 1137 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TACCGGAACTCGGACAAGCCCAACACCTTCTTCCCGATCATGAAGCCGATGTACGTGTTC 1197 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TCCAGCATCTGGAACGCCGACGACTGGGCGACGCGCGGCGGGCTGGAGAAGACGGACTGG 1257 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 ACCAAGGCGCCGTTCATCTCCTCCTACCGCGACTTCACCGCCGACGCGTGCTCCTGGGGC 1317 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 ACGGCGGCGGCGAGCCCGCCCAGCTGCGCGGCGTCCACCGGCAACAGCTGGTGGGACCAG 1377 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 CCGCCGGCGTGGGCGCTCGACGCCGGCCAGCGCGAGGACTCCGCCTGGGTGGCGAGGAAC 1437 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 CTCGTCATCTACGACTACTGCGACGACCGCAAGCGGTTCCCCTCCCCGCCGGAGGAATGC 1497 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TTGCTCCGGACGACCAGCTCGTGAGGCCATCGCCGGCGCCGCCGCCGACGTACATGGCCG 1557 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 TACGATGTGCGGCCAGGATCGGATCGTCCTTCGATCGTGCGGCTCAGATTCACTGTAACT 1617 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 ACTACAGTACTACTATTTTTGGATTGGGCCACGTAGAGTGGCTGTCACGTTGGAAACCAT 1677 consensus_10753#1 ------------------------------------------------------------ consensus_10753#0 ATTCTTTTTGGATGATGAAATGGATAAAATTATTATTTTTAAAAA 1722 consensus_10753#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||