These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 761 fasta sequence [TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA-AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT-ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA-CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC-TGTCTCTGCCGTTTGTATAGTAGCTCGAT-CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGTTGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA] [+] EMBL CF291309 [TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAA ] [+] EMBL AK119686 [ CTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACA ] [+] EMBL AK120731 [ CAGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGC ] [-] EMBL CF291308 [ AGTTGCACCACCAAACAGAGACAGAGGTAGAGAGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAa ] [-] EMBL CA756468 [ AAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAG AGANCGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTGCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGTTGAT ] [-] EMBL CB967284 [ CCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATT ACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCCATCGATAATAATAAAGGCAGGATGAATTGACCAGGAAAGCCCTTGCAAATGGGGGCCCCTGTCTCTGTCTC TGTCTCTCCCGTTTGTATAGTAGCTCGAT CTTGTTCCTGCCCAATTGCAGGCTCTCAATCAGAATCAGAAACCGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCAC ] [+] EMBL BM420363 [ CTC CCGGCGGCGC GCCGACTCC GCCGCCTCCGCTTC CCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTGACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGA CAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCCTTGTTCCTGCC AATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAA CACTTGCTTCCAATGTGTAGCACAACAAAGTCTTGTAAATTAAATGTTCTTGTTGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA] consensusID : consensus_10754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT] [+] EMBL BF430797 [TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGGGCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAGTCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGACTCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCCCAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTAATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATCGATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCTCTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGCTCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTAATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10754#0 TGGACTGAAGGAGTAGAAAATCCTTTGCAGTTGCACCACCAAACAGAGACAGAGGTAGAG 60 consensus_10754#1 ------------------------------------------------------------ consensus_10754#0 AGGGTTCTTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAAAAAGAAGAAGAA 120 consensus_10754#1 -------TTGCTTTGCTTAGCTCCATTGTTTTTGCTTGGCAAGAAGAA------------ 41 ***************************************** consensus_10754#0 GAAGAAGAAGAAGAAGAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGG 180 consensus_10754#1 ---------------GAAGAAGAAGAAGCCATGGAGGGGTTGCTGCCGTTCTTGTACAGG 86 ********************************************* consensus_10754#0 GCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAG 240 consensus_10754#1 GCGATCGTCCACTACGCCAACGGCGGGCAGACGCCGATCGGCAACCCGTTCACCAACGAG 146 ************************************************************ consensus_10754#0 TCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGAC 300 consensus_10754#1 TCGCCGTCGGCGTCGCCGCGGGCGCCCTACTACGTCCGCCTCGCCGGCGGCGCGGCCGAC 206 ************************************************************ consensus_10754#0 TCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCC 360 consensus_10754#1 TCCGGCCGCCTCCGCTTCGCCGAGGTGCCCGTCTTCCCTTCTCCGGCCAGCCGCGACGCC 266 ************************************************************ consensus_10754#0 CAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTA 420 consensus_10754#1 CAGCTCCTGTGATGTCATGTCATGGTCGTCTCTTCTCTTGGAGGATTATTAATTACAGTA 326 ************************************************************ consensus_10754#0 ATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATC 480 consensus_10754#1 ATAATTCCCGCGTTTTTAATTCTTCTTCTTTTTCTCCTTCTTATCTTGGAATTATCAATC 386 ************************************************************ consensus_10754#0 GATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCT 540 consensus_10754#1 GATAATAATAAAGGCAGGATGAATTGACAGGAAAGGCCTTGCAAATGGGGGCCCCTGTCT 446 ************************************************************ consensus_10754#0 CTGTCTCT-GTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGC 599 consensus_10754#1 CTGTCTCTTGTCTCTGCCGTTTGTATAGTAGCTCGATCTTGTTCCTGCCAAATTGCAGGC 506 ******** *************************************************** consensus_10754#0 TCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTA 659 consensus_10754#1 TCTCAATCAGAATCAGAAACAGTAATTAAACATGCATAATACTATTTACTACTATATGTA 566 ************************************************************ consensus_10754#0 ATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTTGT 719 consensus_10754#1 ATCTAAGCACTTGCTTCCAATGTGTAGCACAGCAAAGTCTTGTAAATTAAATGTTCTT-- 624 ********************************************************** consensus_10754#0 TGATGCCCCACCTGATCCTTTAATTGTCATCCAAAAAAAAAA 761 consensus_10754#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||