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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1219 fasta sequence
[CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT-CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC-AGAATTATAC]
[+] EMBL AK071987 [CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGGGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGGCGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ]
[+] EMBL AU173862 [ CGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGNGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGA ]
[+] EMBL AK100049 [ CGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGGCGACCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGCTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ]
[+] EMBL CB652023 [ CGGTTTCCTTGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CGAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAGATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ]
[+] EMBL AU030955 [ CGCCGTCCCGCCGCCACCGGGGAAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAATCCAANGCGCTGC ]
[+] EMBL AU032121 [ TGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTACAAGAATTATA ]
[-] EMBL CB632591 [ TGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATAC]
consensusID : consensus_10765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence
[TCGTCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCACCGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTCTTGCTCCTCGCTCACAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGCACCTTGCTACGAGGCT]
[+] EMBL CB632590 [TCGTCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCACCGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTCTTGCTCCTCGCTCACAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGCACCTTGCTACGAGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10765#0 CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTC 60
consensus_10765#1 ----------------------------------------TCGTCTCCTCCTCCTCTCTC 20
** ****************
consensus_10765#0 TCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGC 120
consensus_10765#1 TCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGC 80
************************************************************
consensus_10765#0 TGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCC 180
consensus_10765#1 TGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCAC 140
********************************************************** *
consensus_10765#0 CGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCG 240
consensus_10765#1 CGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTC-TTGCTCCTCGCTCA 199
**** ** * * * ** * * * * * ** * * * ** * *
consensus_10765#0 CCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCT 300
consensus_10765#1 CAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGC 259
* * * * ** **** ** * ** * * *** * **
consensus_10765#0 TCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACG 360
consensus_10765#1 ACCTTGCTACGAGGCT-------------------------------------------- 275
** ** * *
consensus_10765#0 CCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAG 420
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 CTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGG 480
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 GTTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTT 540
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 TGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACG 600
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 TCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCG 660
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 TCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAG 720
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 AGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAG 780
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 GTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTA 840
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 TTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTA 900
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 TCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGA 960
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 ATCAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGC 1020
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 ACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCAT 1080
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 CGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAA 1140
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 AACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGA 1200
consensus_10765#1 ------------------------------------------------------------
consensus_10765#0 AACTTGTACAGAATTATAC 1219
consensus_10765#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||