These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3359 fasta sequence [CGGTTCATGGTGGCTAGCTAGGGTTTCGCGGCCCCGCGACGTCCAGCGACTGAAGGAAGCGTCCCCGGCGGCGGCAGAGGGAGGCTCTCTCGTTCGCTTTGGAGGCTCCGGAAGAAGAAGGCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATGCAGCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCATCTCATGGAGGGATCCAGAATATCTACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATATAGAATAGGCTATCTAAAGGATGTTATATTACCTCGAGTGTTGGATGATGGCACTCTAGCTAGTCTTAACACGATGATACATTCGAACAATGCCGCTGTTATTTCCTTACTAAAGGATGATTCTTGCTTTATCCAAGAATTGTTTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTGGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGGATCTTTCAGGTGAAGGTGTATTTGATATCATTTCGGATGTCTTGCAGAGTCAAGATAGAAAGATTGTTTCAGCTGGGACAGATGTCCTCATACTTTTTCTTAATCAGGACCCCAACCTACTGAGGTCATATATTGTCCAACAAGAAGGGAATTCTCTTCTTGGACTTCTGGTCAAAGGAATGGTAACTGACTTCGGTGAGGCAATGCACTGTCAATTTCTGGAAATTCTTCGTATTTTGATGGATTCTTTTACCATGTCTGGAGCACATAGAGATGCTGTTATTGAAATTTTCTATGAAAAGCATCTTGACTATTTGGTTGATGTAATAGCATCATCATGTCCTCCGAGGAACATTTTCCAGAGCATCTAACTCTGCTGGAAATACCGAAACTGAAGTGAATCGCACTAAGCCTGAAATTTTGTTAAATGTTTGTGAACTATTATGCTTTTGCATAGTTCATCATCCCTACAAAATTAAGTGCCACTTTCTAATCAACAATGCAATAGAGAAAATCCTTGCCTTGACTCGACGGAGGGAGAAGTTTTTGGTTGTTGCAGCAGTTAGATTTATGCGAACTACTATATCGAGAAATGATGATTTTCTTATTCGTCATGTTGTCAAGATGAATTTGTTCAAACCAATAATTGACGCCTTTGTTGAAAATGGGGATAGATATAACATGCTACAGTCAGGAGTACTCGAACTTTTGGAATACATACGGAAGGAAGGTCTAAAACAACTTATTATATATGCCAATGAGTCCTTTTGGGATCAACTTATGAAGTTTGAACACTTTGGGAGTATTCAGGCCTTTAGACTTAAGTATCAACAGTACTTGGAGAGTGCTGAAACGAAGTTAAGTGCCAATGTACCTGATATTAGAAAGAAAGCGGAAGAAAGAGGCCTTGAGAAGGAAGAGGAAGACTATTTCAATGAGGACAGCGACGAAGAAGATTCAGTCCGGCGGACGAAACATGCTCAGAAACAAGATGGTGGGGCTAAGTTAACTAATGGCAGTGAAGCTGATGATGTTTCCTCAAGGCCTAAATCTGGTGGACTAGTGGATTATGCTGATGATGATGATGAGGACTTCAATCCTCCACCTAAGGAGCCTGACAGGCCTGAAGAGGATGATGAACCCCTAACTATAGCCAAATTGAAGCGAAAGTTAATGAATAGTAAAGTGGATGGCAAACAGTCTGATGGGGAGTTCCACAAGAGACAAAAGATAGAAACGAGAATTACTAGTGTTAAGATTGGAGCTTCGACTAACCTGGTTAGTAGACGCATGGATGATTTAGAGAAGCAGGAACCCCGTTCACCTGCCTCAAGTTCGTCAGGCTCTGAAGCCAATGGCGTTTTTGGGGAGCATAGTGTTCATTCTGAGGAGCATCAACGTTCTGCAGACAACACAGAAGCATCACGGCAAGCTGGTGGTGATTGTGTCAATGCCATGGGCAATTTGTCTACTGAGAAGTCAGTAAATACCACAAATACGAATGATTCAGAGCCTTATTCAGTGAGATGACA-AAGTGATATCAAGAAACGGTTTATCCCTAACCCAAACCATCAATGC-TTGCCAAC--AAGAAGGAA--CCA-CGATGTGTTCCGCTTCAGAGAAGGCCAAAAACATTGCTCCAGAGAAGGCCAAATAGAGTAAT-CTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAA-GCAGTGAATATGTGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTG-TTGTAAAACAAATAGGAAGGAATAGTTTTTCTTTTTTAATTGAGCACCATTTTGCAGCAGTTTGTGCCCTCGTATCGGTATCATACACAATTGTAATTCGTTTATTCATAGTTTTGCAGGGTATACTTTGTCTTGGATGTTCATATGTTTTTCAACTCAAATCAACAACCATATCTT] [+] EMBL AK099595 [CGGTTCATGGTGGCTAGCTAGGGTTTCGCGGCCCCGCGACGTCCAGCGACTGAAGGAAGCGTCCCCGGCGGCGGCAGAGGGAGGCTCTCTCGTTCGCTTTGGAGGCTCCGGAAGAAGAAGGCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATGCAGCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCATCTCATGGAGGGATCCAGAATATCTACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATATAGAATAGGCTATCTAAAGGATGTTATATTACCTCGAGTGTTGGATGATGGCACTCTAGCTAGTCTTAACACGATGATACATTCGAACAATGCCGCTGTTATTTCCTTACTAAAGGATGATTCTTGCTTTATCCAAGAATTGTTTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTGGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGGATCTTTCAGGTGAAGGTGTATTTGATATCATTTCGGATGTCTTGCAGAGTCAAGATAGAAAGATTGTTTCAGCTGGGACAGATGTCCTCATACTTTTTCTTAATCAGGACCCCAACCTACTGAGGTCATATATTGTCCAACAAGAAGGGAATTCTCTTCTTGGACTTCTGGTCAAAGGAATGGTAACTGACTTCGGTGAGGCAATGCACTGTCAATTTCTGGAAATTCTTCGTATTTTGATGGATTCTTTTACCATGTCTGGAGCACATAGAGATGCTGTTATTGAAATTTTCTATGAAAAGCATCTTGACTATTTGGTTGATGTAATAGCATCATCATGTCCTCCGAGGAACATTTTCCAGAGCATCTAACTCTGCTGGAAATACCGAAACTGAAGTGAATCGCACTAAGCCTGAAATTTTGTTAAATGTTTGTGAACTATTATGCTTTTGCATAGTTCATCATCCCTACAAAATTAAGTGCCACTTTCTAATCAACAATGCAATAGAGAAAATCCTTGCCTTGACTCGACGGAGGGAGAAGTTTTTGGTTGTTGCAGCAGTTAGATTTATGCGAACTACTATATCGAGAAATGATGATTTTCTTATTCGTCATGTTGTCAAGATGAATTTGTTCAAACCAATAATTGACGCCTTTGTTGAAAATGGGGATAGATATAACATGCTACAGTCAGGAGTACTCGAACTTTTGGAATACATACGGAAGGAAGGTCTAAAACAACTTATTATATATGCCAATGAGTCCTTTTGGGATCAACTTATGAAGTTTGAACACTTTGGGAGTATTCAGGCCTTTAGACTTAAGTATCAACAGTACTTGGAGAGTGCTGAAACGAAGTTAAGTGCCAATGTACCTGATATTAGAAAGAAAGCGGAAGAAAGAGGCCTTGAGAAGGAAGAGGAAGACTATTTCAATGAGGACAGCGACGAAGAAGATTCAGTCCGGCGGACGAAACATGCTCAGAAACAAGATGGTGGGGCTAAGTTAACTAATGGCAGTGAAGCTGATGATGTTTCCTCAAGGCCTAAATCTGGTGGACTAGTGGATTATGCTGATGATGATGATGAGGACTTCAATCCTCCACCTAAGGAGCCTGACAGGCCTGAAGAGGATGATGAACCCCTAACTATAGCCAAATTGAAGCGAAAGTTAATGAATAGTAAAGTGGATGGCAAACAGTCTGATGGGGAGTTCCACAAGAGACAAAAGATAGAAACGAGAATTACTAGTGTTAAGATTGGAGCTTCGACTAACCTGGTTAGTAGACGCATGGATGATTTAGAGAAGCAGGAACCCCGTTCACCTGCCTCAAGTTCGTCAGGCTCTGAAGCCAATGGCGTTTTTGGGGAGCATAGTGTTCATTCTGAGGAGCATCAACGTTCTGCAGACAACACAGAAGCATCACGGCAAGCTGGTGGTGATTGTGTCAATGCCATGGGCAATTTGTCTACTGAGAAGTCAGTAAATACCACAAATACGAATGATTCAGAGCCTTATTCAGTGAGATGACA AAGTGATATCAAGAAACGGTTTATCCCTAACCCAAACCATCAATGC TTGCCAAC AAGAAGGAA CCA CGGTGTGTTCCGCTTCAGAGAAGGCCAAAAACATTGCTCCAGAGAAGGCCAAATAGAGTAAT CTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAA GCAGTGAATATGTGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTG TTGTAAAACAAATAGGAAGGAATAGTTTTTCTTTTTTAATTGAGCACCATTTTGCAGCAGTTTGTGCCCTCGTATCGGTATCATACACAATTGTAATTCGTTTATTCATAGTTTTGCAGGGTATACTTTGTCTTGGATGTTCATATGTTTTTCAACTCAAATCAACAACCATATCTT] [+] EMBL CA754077 [ AATCCTCCACCTAAGGAGCCTGACAGGCCTGAAGAGGATGATGAACCCCTAACTATAGCCAAATTGAAGCGAAAGTTAATGAATAGTAAAGTGGATGGCAAACAGTCTGATGGGGAGTTCCACAAGAGACAAAAGATAGAAACGAGAATTACTAGTGTTAAGATTGGAGCTTCGACTAACCTGGTTAGTAAACGCATGGATGATTTAGAGAAGCAGGAACCCCGTTCACCTGCCTCAAGTTCGTCAGGCTCTGAAGCCAATGGCGTTTTTGGGGAGCATAGTGTTCATTCTGAGGAGCATCAACGTTCTGCAGACAACACAGAAGCATCACGGCAAGCTGGTGGTGATTGTGTCAATGCCATGGGCAATTTGTCTACTGAGAAGTCAGTANATACCACAAATACGAATGATTCAGAGCCTTATTCAGTGAGATGACA AAGTGATATCAAGAAACGGTTTATCCCTAACCCAAACCATCAATGCTTTGCC AC AAGAAGGAA CA CGATGTGTTCCGCTTCAGAGAAGGCCAAAAACATTGCTCCAGAGAAGG CAAATAGAGGAATCCTC AACCTGATGCAAATGGGTCAAGGTGATGTAGATCGCT ] [-] EMBL CB626738 [ AGAGAAGCAGGAACCCCGTTCTCCTGCCTCAAGTTCGTCAGGCTCTGAAGCCAATGGTGTTTTTGGGGAGCATAGTGTTCATTCTGAGGAGCATCAACGTTTTGCAGGCAACACAGAAGCATCCCGGCAAGGTGGTGGTGATTGTGTCAATGCCATGGGCAATTTGTTTACTGAGAAGTCAGTAAATTCCACAAATACGAATGATTCAGAGCCTTATTCAGTGAGATGACA AAGTGATATCAAGAAACGGTTTATCCCTAGCCCAAACCATCAATGC TTGCCAAC AAGAAGGAA CCA CGATGTGTTGCGCTTCAGAGAAGGCCAAAAACATTGCTCCAGAGAAGGCCAAATAGAGTAAT TTCAAACCTGATGCAAATGGTTCAAGGTGAGGTAGATCGCTCTTACCTGTATATGTTGGGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATTTGAACAAATGAGAGTTGGCATGCCCTTCGGTTCAGCATTGGCACGAGCCACGCTCCGGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAATGCAaagggat ] [+] EMBL BQ908660 [ AAGCATCACGGCAAGCTGGTGGTGATTGTGTCAATGCCATGGGCNATTTGTCTACTGAGAAGTCAGTAAATACCACNAATACGAATGATTCAGAGCCTTATTCAGTGAGATGACACAAGTGATATCAAGAAACGGTTTATCCCTAACCCCAACCATCAATGC TTGCC AC AAGAAGGAA CCACCGATGTGTTCCGCTTCAGAGAAGGCCCAAAACATTGCTCCAGAGAAGGCCAAATAGAGTAAT CTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAAC ACTGAGAGTTGGCATGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAA GCAGTGAATATGTGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTGTTTGTAAAAC AATAGGAAGGAATAGTTTTTCTTTTTTAAaaaaaaaa ] [+] EMBL BI803276 [ tttttcccCCAACCAAAGAAGGAACCCCA CGATGTGTTCCGCTTCAGAGAA GCCAAAAACATTGCTCCAGAGAAGCCCAAATAGAGTAAT CTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTCCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAA CCAGTGAATA TGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTG TTGTAAAACAAATAGGAAGGAATAGTTTTTCTTTTTTAATTGAGCACCATTTT CACCAGTTTGTGCCCTCGTATCGGTATCATACAC ATTGTAATTCGTTTATTCATAGTTTTGCAGGGTATACTTTGTCTTGGATGTTaaaaa ] consensusID : consensus_10771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1451 fasta sequence [CTCGGGGTCTCGGGGAGCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAGGAGTCTCGGTTCATGGTGGCTAGCTAGGGTTTCGCGGCCCCGCGACGTCCAGCGACTGAAGGAAGCGTCCCCGGCGGCGGCAGAGGGAGCAGGAGCGGCGGGAGGCGGAGGGCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATGCAGCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCATCTCATGGAGGGATCCAGAAGTAGCAACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTGCTCTTGAAGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATATAGAATAGGCTATCTAAAGGATGTTATATTACCTCGAGTGTTGGATGATGGCACTCTAGCTAGTCTTAACACGATGATACATTCGAACAATGCCGCTGTTATTTCCTTACTAAAGGATGATTCTTGCTTTATCCAAGAATTGTTTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTGGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTTGTCCTATGCCCTGTGATTAGACTTCACAGGCTTAATAACACATGATGATGCGTCAATATTCCAAAGTGGTAACAGTCGCATATGGGCTGTATTTAGCAGACTTAGACTAACAATAAGCCATTCGGTTTT] [+] EMBL AK119468 [CTCGGGGTCTCGGGGAGCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAGGAGTCTCGGTTCATGGTGGCTAGCTAGGGTTTCGCGGCCCCGCGACGTCCAGCGACTGAAGGAAGCGTCCCCGGCGGCGGCAGAGGGAGCAGGAGCGGCGGGAGGCGGAGGGCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATGCAGCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCATCTCATGGAGGGATCCAGAAGTAGCAACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTGCTCTTGAAGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATATAGAATAGGCTATCTAAAGGATGTTATATTACCTCGAGTGTTGGATGATGGCACTCTAGCTAGTCTTAACACGATGATACATTCGAACAATGCCGCTGTTATTTCCTTACTAAAGGATGATTCTTGCTTTATCCAAGAATTGTTTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTGGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTTGTCCTATGCCCTGTGATTAGACTTCACAGGCTTAATAACACATGATGATGCGTCAATATTCCAAAGTGGTAACAGTCGCATATGGGCTGTATTTAGCAGACTTAGACTAACAATAAGCCATTCGGTTTT] [+] EMBL CB677677 [ GCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCATCTCATGGAGGGATCCAGAAGTAGCAACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTGCTCTTGAAGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCT AAGGATCATGTAGTTTTC AAGAGGCCATACCTATTAAAAATG ] consensusID : consensus_10771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [TCCCTCCCCCNCCCATCCAATGTCTCCCAACCAAGAAGGANCCCCGATGTGTCTCCGTCTTCAGAGAAGCCCAAAACTTGCTCCAGAGAAGCCCAAATAGAGTAATCTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATCGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAAGCAGTGAATATGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTGTTGTAAAACAATAGGAAGGAATAGTTTTTCTNTTTTAATTGAGCACCATTTTGCACCAGTTTGTGCCCTCGTATCGGTATCATACACNTTGTATTCGTTATCTAGTTGCGGTATACTTTTCGAAACGCGCTTAGAGAT] [+] EMBL BI799493 [TCCCTCCCCCNCCCATCCAATGTCTCCCAACCAAGAAGGANCCCCGATGTGTCTCCGTCTTCAGAGAAGCCCAAAACTTGCTCCAGAGAAGCCCAAATAGAGTAATCTCAAACCTGATGCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAAAGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATCGCCCTTCGGTTCAGCATTGACACGAGCCACGCTCCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAAGCAGTGAATATGCTCTTCTCCATTATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTGTTGTAAAACAATAGGAAGGAATAGTTTTTCTNTTTTAATTGAGCACCATTTTGCACCAGTTTGTGCCCTCGTATCGGTATCATACACNTTGTATTCGTTATCTAGTTGCGGTATACTTTTCGAAACGCGCTTAGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10771#0 CGGTTCATGGTGGCTAGCTAGGGTTTCGCGGCCCCGCGACGTCCAGCGACTGAAGGAAGC 60 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GTCCCCGGCGGCGGCAGAGGGAGGCTCTCTCGTTCGCTTTGGAGGCTCCGGAAGAAGAAG 120 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATGCAGCGTGTGAAAG 180 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGGCATGTAAATATTG 240 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 ACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAAGAAGACAATGAAA 300 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAAGAAGATACAATCA 360 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TCTCATGGAGGGATCCAGAATATCTACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGG 420 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCT 480 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TGGTGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAAGCCTCTAGAGTATTGCATTCAAA 540 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGGGAGCTTCCACCTGTTGAGTTATC 600 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGTGGCATTACAGATCAGATGCGCGT 660 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCAAAGTTACTGGACATTTTTCGAAT 720 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 ATGCGAGGATTTAGAGAACTTAGATGATCTTCACATGATCTTCAAATTAGTCAGGGGAAT 780 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CATATTGCTGAACAGTTCATCAATCTTTGACAAGATTTTCTCAGATGAGTTTATTCTTGA 840 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CATCATAGGTGCCCTTGAATATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTT 900 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCTATTAAAAATGTTTCTGTGGTTTC 960 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 AAAGATACATCAAACATATAGAATAGGCTATCTAAAGGATGTTATATTACCTCGAGTGTT 1020 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GGATGATGGCACTCTAGCTAGTCTTAACACGATGATACATTCGAACAATGCCGCTGTTAT 1080 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TTCCTTACTAAAGGATGATTCTTGCTTTATCCAAGAATTGTTTGCTAGGATGAGATTATC 1140 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 AAATATTTCTATGGAATCAAAAAGAGAATTGGTGCTGTTCTTGCATGAATTTTGCACTCT 1200 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGGATCTTTCAGGTGAAGG 1260 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TGTATTTGATATCATTTCGGATGTCTTGCAGAGTCAAGATAGAAAGATTGTTTCAGCTGG 1320 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GACAGATGTCCTCATACTTTTTCTTAATCAGGACCCCAACCTACTGAGGTCATATATTGT 1380 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CCAACAAGAAGGGAATTCTCTTCTTGGACTTCTGGTCAAAGGAATGGTAACTGACTTCGG 1440 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TGAGGCAATGCACTGTCAATTTCTGGAAATTCTTCGTATTTTGATGGATTCTTTTACCAT 1500 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GTCTGGAGCACATAGAGATGCTGTTATTGAAATTTTCTATGAAAAGCATCTTGACTATTT 1560 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 GGTTGATGTAATAGCATCATCATGTCCTCCGAGGAACATTTTCCAGAGCATCTAACTCTG 1620 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CTGGAAATACCGAAACTGAAGTGAATCGCACTAAGCCTGAAATTTTGTTAAATGTTTGTG 1680 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 AACTATTATGCTTTTGCATAGTTCATCATCCCTACAAAATTAAGTGCCACTTTCTAATCA 1740 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 ACAATGCAATAGAGAAAATCCTTGCCTTGACTCGACGGAGGGAGAAGTTTTTGGTTGTTG 1800 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 CAGCAGTTAGATTTATGCGAACTACTATATCGAGAAATGATGATTTTCTTATTCGTCATG 1860 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 TTGTCAAGATGAATTTGTTCAAACCAATAATTGACGCCTTTGTTGAAAATGGGGATAGAT 1920 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 ATAACATGCTACAGTCAGGAGTACTCGAACTTTTGGAATACATACGGAAGGAAGGTCTAA 1980 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 ------------------------------------------------------------ consensus_10771#0 AACAACTTATTATATATGCCAATGAGTCCTTTTGGGATCAACTTATGAAGTTTGAACACT 2040 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 --------------------------------CTCGGGGTCTCGGGGAGCTTCTTTCTCT 28 consensus_10771#0 TTGGGAGTATTCAGGCCTTTAGACTTAAGTATCAACAGTACTTGGAGAGTGCTGAAACGA 2100 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CTCTCTCTCTCTCTCTCTCTAGGAGTCTCGGTTCATGGTGGCTAGCTAGGGTTTCGCGGC 88 consensus_10771#0 AGTTAAGTGCCAATGTACCTGATATTAGAAAGAAAGCGGAAGAAAGAGGCCTTGAGAAGG 2160 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CCCGCGACGTCCAGCGACTGAAGGAAGCGTCCCCGGCGGCGGCAGAGGGAGCAGGAGCGG 148 consensus_10771#0 AAGAGGAAGACTATTTCAATGAGGACAGCGACGAAGAAGATTCAGTCCGGCGGACGAAAC 2220 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CGGGAGGCGGAGGGCGGCGGCGGCGGCGGCGAGGCCGCGGCGGCGAACACCAGCGGTATG 208 consensus_10771#0 ATGCTCAGAAACAAGATGGTGGGGCTAAGTTAACTAATGGCAGTGAAGCTGATGATGTTT 2280 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CAGCGTGTGAAAGTATACCGTTTGACTGATGGAGGGAAATGGGATGATCGGGGCACAGGG 268 consensus_10771#0 CCTCAAGGCCTAAATCTGGTGGACTAGTGGATTATGCTGATGATGATGATGAGGACTTCA 2340 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CATGTAAATATTGACTTCCTTGAGGATTCTAAAGAACTTGGTTTGACTGTTTTGGATGAA 328 consensus_10771#0 ATCCTCCACCTAAGGAGCCTGACAGGCCTGAAGAGGATGATGAACCCCTAACTATAGCCA 2400 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 GAAGACAATGAAACATTGCTCATGCACAACATTACTTCTGAAGATATCTACAGAAAGCAA 388 consensus_10771#0 AATTGAAGCGAAAGTTAATGAATAGTAAAGTGGATGGCAAACAGTCTGATGGGGAGTTCC 2460 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 GAAGATACAATCATCTCATGGAGGGATCCAGAAGTAGCAACAGAATTAGCGTTGAGCTTT 448 consensus_10771#0 ACAAGAGACAAAAGATAGAAACGAGAATTACTAGTGTTAAGATTGGAGCTTCGACTAACC 2520 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CAGGAAGCTGCTGGGTGCTCATACATATGGGACAACATATGTGACATTCAGAGAAACATT 508 consensus_10771#0 TGGTTAGTAGACGCATGGATGATTTAGAGAAGCAGGAACCCCGTTCACCTGCCTCAAGTT 2580 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 CAGTTTAATAACCTTGGTGCTCTTGAAGTCGGTCCTCGTCCAACTTCGGTTTCTCTAGAA 568 consensus_10771#0 CGTCAGGCTCTGAAGCCAATGGCGTTTTTGGGGAGCATAGTGTTCATTCTGAGGAGCATC 2640 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 GCCTCTAGAGTATTGCATTCAAATGATGAATCCTTCCGCTCCGTTAATGGTGAGCTGAGG 628 consensus_10771#0 AACGTTCTGCAGACAACACAGAAGCATCACGGCAAGCTGGTGGTGATTGTGTCAATGCCA 2700 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 GAGCTTCCACCTGTTGAGTTATCCAATCTTCCTTTAATTTTAAAGACTATATTGGAGGGT 688 consensus_10771#0 TGGGCAATTTGTCTACTGAGAAGTCAGTAAATACCACAAATACGAATGATTCAGAGCCTT 2760 consensus_10771#2 ------------------------------------------------------------ consensus_10771#1 GGCATTACAGATCAGATGCGCGTGGCAGAGTTGATAACACAAGATCGCGAGTTTTTCCCA 748 consensus_10771#0 ATTCAGTGAGATGACAAAGTGATATCAAGAAACGGTTTATCCCTAACCCAAACCATCAAT 2820 consensus_10771#2 ---------------------------------------TCCCTCCCCCNCCCATCCAAT 21 consensus_10771#1 AAGTTACTGGACATTTTTCGAATATGCGAGGATTTAGAGAACTTAGATGATCTTCACATG 808 * * ** consensus_10771#0 GCTTGCCAAC-AAGAAGGAACCACGATGTGT-TCCG-CTTCAGAGAAGGCCAAAAACATT 2877 consensus_10771#2 GTCTCCCAACCAAGAAGGANCCCCGATGTGTCTCCGTCTTCAGAGAAGCCCAAAAC--TT 79 consensus_10771#1 ATCTTCAAATTAGTCAGGGGAATCATATTGCTGAACAGTTCATCAATCTTTGACAAGATT 868 * * ** * *** * ** **** * * * ** consensus_10771#0 GCTCCAGAGAAGGCCA-----AATA----GAGTAATCTCAAACCTGATGCAAATGGTTC- 2927 consensus_10771#2 GCTCCAGAGAAGCCCA-----AATA----GAGTAATCTCAAACCTGATGCAAATGGTTC- 129 consensus_10771#1 TTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATATGACCCAGATGTTCCT 928 **** ** * * * ** ** ** *** ** *** * * consensus_10771#0 AAGGTGATGTAG-ATCGCTCTTACCTGTA----TATGTTGCGT-----GAAATTGCAGCA 2977 consensus_10771#2 AAGGTGATGTAG-ATCGCTCTTACCTGTA----TATGTTGCGT-----GAAATTGCAGCA 179 consensus_10771#1 AAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGGCCATACCT 988 ** ** ** ***** *** ** * **** * * ** * * consensus_10771#0 ACCATTTGTGAGCCTGTAAAGTTAACTGTCCG-CAAGGAT-TAGATCTGAACAACTGAGA 3035 consensus_10771#2 ACCATTTGTGAGCCTGTAAAGTTAACTGTCCG-CAAGGAT-TAGATCTGAACAACTGAGA 237 consensus_10771#1 ATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATATAGAATAGGCTATCTAAAG 1048 * * ** **** * ** * * *** ** **** * * ** * consensus_10771#0 GTTGGCAT-GCCCTTCG---GTTCAGCATTGACACG--AGCCACGCT---CCTGATGATG 3086 consensus_10771#2 GTTGGCATCGCCCTTCG---GTTCAGCATTGACACG--AGCCACGCT---CCTGATGATG 289 consensus_10771#1 GATGTTATATTACCTCGAGTGTTGGATGATGGCACTCTAGCTAGTCTTAACACGATGATA 1108 * ** ** * *** *** ** *** *** * ** * ****** consensus_10771#0 CATAATTATTTCTATAAATATGAGCTTCTGGAGAAGCAGTGAATATGTGCTCTTCTCCAT 3146 consensus_10771#2 CATAATTATTTCTATAAATATGAGCTTCTGGAGAAGCAGTGAATATG--CTCTTCTCCAT 347 consensus_10771#1 CATT-CGAACAATGCCGCTGTTATTTCCTTACTAAAGGATGATTCTT-GCTTTATCCAAG 1166 *** * * * * * * ** ** *** * * ** * * * consensus_10771#0 TATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTGTTGTAAAACAAATAGGAAGGAATA 3206 consensus_10771#2 TATTTCTTTCTAGTGTCATTGGCTGAGATGTGACTGTTGTAAAACAA-TAGGAAGGAATA 406 consensus_10771#1 AATTGTTTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAA-AGAGAATTGGTG 1225 *** ** **** * * * * ** * ** * * * * ** *** * consensus_10771#0 GTTTTTCTTTTTTAATTGAGCACCATTTTGCAGCAGTTTGTGCCCTCGT-----ATCGGT 3261 consensus_10771#2 GTTTTTCTNTTTTAATTGAGCACCATTTTGCACCAGTTTGTGCCCTCGT-----ATCGGT 461 consensus_10771#1 CTGTTCTTGCATGAATTTTGCACT-CTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACG 1284 * ** * * **** **** * * * ****** * * * ** consensus_10771#0 ATCATACACAATTGTAATTCGTTTATTCATAGTTTTGCAGGGTATACTTTGTCTTGGATG 3321 consensus_10771#2 ATCATACACN-TTGTA-TTCGTT-ATC--TAGTT----GCGGTATACTTTTCGAAACGCG 512 consensus_10771#1 ACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTTGTCCTATGCCCTGTGATTAGAC 1344 * * * *** ** ** * * * *** * * consensus_10771#0 TTCATATGTTTTTCAACTCAAATCAACAACCATATCTT---------------------- 3359 consensus_10771#2 CTTAGAGAT--------------------------------------------------- 521 consensus_10771#1 TTCACAGGCTTAATAACACATGATGATGCGTCAATATTCCAAAGTGGTAACAGTCGCATA 1404 * * * consensus_10771#0 ----------------------------------------------- consensus_10771#2 ----------------------------------------------- consensus_10771#1 TGGGCTGTATTTAGCAGACTTAGACTAACAATAAGCCATTCGGTTTT 1451 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||