| These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_10784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1397 fasta sequence 
                              [CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT-GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT-ATTCGCCATGTT-AAAGGA-TTTTGTGAA-TGAAGTCAAGTCGGAGGATCTAGTC-TCTCCT-ACTCTGATAATT-ATTGGG-AAGGTGGTGGCATTGTCACCCTTTT-GGATCGATTCAT-CCAAACAGGGTGCACAATCCATT-GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT-CTGATCTGG-TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG-CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC-GTGTACACCCTTTTC--AAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK072497             [CCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGCAAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATAT GGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTGTTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGT ATTCGCCATGTT AAAGGA TTTTGTGAA TGAAGTCAAGTCGGAGGATCTAGTC TCTCCT ACTCTGATAATT ATTGGG AAGGTGGTGGCATTGTCACCCTTTT GGATCGATTCAT CCAAACAGGGTGCACAATCCATT GAGAATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCC                             ]
[+] EMBL OSC5441              [                                                                                                                                                                                                                                                                                                      CCCTCTGGTCTTTGGAAGGGGTGGAGAAGAGATGGATTTCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAGGAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTGTTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTATATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGGTTTGTCAACACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACANCGGCTGTTGCAGTTGAGCGTGGCACTANCCCCCAACAACGCATGGTAATTCGCCATGTTAAAAGGATTTTTGTGAATTAAAGTCAAGTCGGAGGATCTAGTCTTCTCCT ACTCTGATAATTAATTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C96838               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTCCTAACTCTGATAATT ATTGGGAAAGGTGGTGGCATTTTCCCCCTTTTGGGATCGATTCATCCCAAACAGGNTGCACAACCCATTGGNGAATTTGTACGCAGCCGGGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGACCGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCCTGATCTGGTTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGNCAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACCCTTTTC  AAAAA                 ]
[-] EMBL CA763375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGTGGGGGCATTGTCACCCTTTT GGTTCGATTATT CCAAACAGGGTGCCCAATCCATT GAGAATTTGTCCGCAGCCGAGCCCAAAAGATAACAGTTCCTCTAGAATCAAATGTGGGAGTGCCCGTTGAGTAATGTCATACATAAGATATGGACTTTCCCAAGTAAGATTTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCCCAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTTTTCAACTCGGAGTAATACTCCTTTACTGGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTGGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTTTGAATAAAAC GTGTACCCCCTTTTCCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF196080             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATCTAAGCCAAT CTGATCTGG TTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAAC GTGTACACC                              ]
[+] EMBL AU181436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGATGATGGAATGAACCTGGG CAGGAGATTATGCACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAACAAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACTTATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCGCTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTTTTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTGTGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTGTACATTTGATAATTATTTCTGAATAAAACTGTGTACACCCTTTTC  CTAAAAA               ]
consensusID : consensus_10784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 562 fasta sequence 
                              [CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC-GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA]
[+] EMBL CB640687             [CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGGCTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTCGACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACGCCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGC GCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCC                                                                                                                                                                           ]
[+] EMBL AU181435             [                                                                                                                                                                                                       CCATCAGCTCACCACAACTATCCCGGCATCGCCATGGCAGCTCGCCCTTCGACCACCGCGCTTCCAGCCTCTCCCCGCCCCCATTCCCGAGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATCATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGCGACGCCTGGTCCTACGCCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTGCGGCTGCGGCGGCGGCTTCTTCGGGTCGCCGGGACGACGAGATCGCGCTGCAGCTGCCGGAGCTGAGGAGGCTGCTGGAGGCGCTGCGGGCGTCAGAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10784#0      -----------------------------------------------CCTGGTCCTGGGG 13
consensus_10784#1      CGGCGCTCCACAAGGTCGCCGCCACTTTTCAATCCAGCCGTCTCCCTCCTGGTCCTGGGG 60
                                                                      *************
consensus_10784#0      CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 73
consensus_10784#1      CTCTTCCTCCCCCCTTTCCCTCCACCCCTTCGCGCATCCAAAACCGCACCCCCCGACGTC 120
                       ************************************************************
consensus_10784#0      GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 133
consensus_10784#1      GACGAGCCACTCCGCTCGGCTTCAGCTCTCCTCCTCCTCCTCCTTCCTGCTGCTCCCACG 180
                       ************************************************************
consensus_10784#0      CCGTATAAAAGTGCCACGGCCATCAGCTCACCACAACTATCCAGGCTGCTCTACGTCGGC 193
consensus_10784#1      CCGTATAAAAGTGCCACGGCCATCATCTCACCACAACTATCCCGGCATCGCCATGGCG-C 239
                       ************************* **************** ***  * * * * ** *
consensus_10784#0      AAGACGGCCGGATACCACAGCCGCACCCAGGAAGAGATTCATGAGCTGCTACTAAGCTTC 253
consensus_10784#1      TCGCCCTTCGACCACCGCGCTTCCAGCC---------TCTCCCCGCCCCCATT----CCC 286
                         * *   **   *** *     ** **         *      **  * * *      *
consensus_10784#0      GCAGAGGCTGGTGCCAATGTGGTGCG-GTTGAAAGGCGGCGACCCTCTGGTCTTTGGAAG 312
consensus_10784#1      GCGTCAACCGCCTCCACCACCGCTCTCGCCGCACGGCCCTCCTCCTCCGCTCACGCCATC 346
                       **     * *   ***     *  *  *  * * ***      **** * **     *  
consensus_10784#0      GGGTGGAGAAGAGATGGATT-TCCTTCAACAACAAGGAATAAGAGTTGAAGTTATCCCAG 371
consensus_10784#1      ATCTGCGCCGCTGCTGCTTCGCCCTTCACCGAGGCCACATCCTCCTCGCGGTACCGCCGC 406
                          **       * **  *   ****** * *      **     * *  **    **  
consensus_10784#0      GAATTACATCAGCTTCAGGAATTGCAGCAGAACTTGGCATTCCACTAACCCATAGAGGTG 431
consensus_10784#1      GA----CGCCTGGTCCTACG-CCGCCTCGGATGGCGATTCGTCGTCGTCGTCCGCTGCTG 461
                       **    *  * * * *       **  * **    *      *     *       * **
consensus_10784#0      TTGCTACCAGTGTCAGATTTTTAACTGGGCACTCTAGAAATGGTGGGCCAGATCCTCTAT 491
consensus_10784#1      CGGCTGC-GGCGGCGGCTTCTT--CGGGTCGCC---GGGACGACGAGATCG---CGCTGC 512
                         *** *  * * * * ** **  * ** * *    *  * *  * *   *   * **  
consensus_10784#0      ATGTGGCAGAGAATGCAGCAGATCCTGACACAACTTTAGTTGTGTATATGGGTTTGTCAA 551
consensus_10784#1      AGCTGCCGGAGC-TGAGGAGGCTGCTGGAGGCGCTGCGGGCGT-CAGAGGGA-------- 562
                       *  ** * ***  **  *  * * ***      **   *  **  * * **         
consensus_10784#0      CACTGCCATCTCTTGCTCCCAAGTTGATGAAGCATGGTCTTCCACCGGATACACCGGCTG 611
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TTGCAGTTGAGCGTGGCACTACCCCCCAACAACGCATGGTATTCGCCATGTTAAAGGATT 671
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TTGTGAATGAAGTCAAGTCGGAGGATCTAGTCTCTCCTACTCTGATAATTATTGGGAAGG 731
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TGGTGGCATTGTCACCCTTTTGGATCGATTCATCCAAACAGGGTGCACAATCCATTGAGA 791
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      ATTTGTACGCAGCCGAGACCAAAAGATAACAGTTCCTCTAGAATCAAATGTCGGAGTGAC 851
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      CGTTGAGTAATGTCATACATCAGATATGGACTTTCACAAGTAAGATCTAAGCCAATCTGA 911
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TCTGGTTTAGTTTAGGGCATGCAAACAGATGATGGAATGAACCTGGGCAGGAGATTATGC 971
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      ACATTCCCTGATGACATCACAGGAAACAGAGATTCTTAAAGATTGATGACAGCTTTGAAC 1031
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      AAAGGTGGACATGTGATCCTCAAATAACAGCACTGCATTTGAACGGTGTTTGACATAACT 1091
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TATTCACTGCTACTGCAATTCTTCAACTCGGAGTAATACTCCTTTACTTGGAGCTGTTCG 1151
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      CTACTCCCTTCCATTTTAAGGTTGTAGCTGTTCTCTTTCGTTTTTGTTTACCCGGCATTT 1211
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TTTTGGTCAGAGGCTCTCCTGATTCACGAAGCCTCAACAGGCATATGGCTGTTTTAAGTG 1271
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TGTAATCTACCAATCGTTGTATGTCAGCTTTTGCATATTCCTTCGTGGAAAACTCGATTG 1331
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      TACATTTGATAATTATTTCTGAATAAAACGTGTACACCCTTTTCAAAAAAAAAAAAAAAA 1391
consensus_10784#1      ------------------------------------------------------------
                                                                                   
consensus_10784#0      AAAAAA 1397
consensus_10784#1      ------
                             
 | 
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||