These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 931 fasta sequence [CCTNTTCGNTCCATTCCCTCTCCTC---CTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCGTCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATG-AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATGACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA] [+] EMBL AU078606 [CCTNTTCGNTCCATTCCCTCTCCTCCTNCTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCGTCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAAGAGGNGATGCCTTCANCTCAGGAAGAGG ] [+] EMBL CA767391 [ TCCCTCTCCTC CTCCCCTCCACCTCCACGCGCTCCTCCCCACCTCGTCTCGAACCCAGCTTGTCGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATG AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGNTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGGTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGANGNTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCNTATATTGATGCTNCCTG ] [+] EMBL AK058475 [ GAATG AAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCAGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCGCGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATA ] [+] EMBL C99090 [ CATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTNNTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGA GTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCATCCTTANATTGATGCTCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGG AACTTGGAGAGTGATAACCTTTTGTGCTTTANAATGCAG ] [+] EMBL AU078605 [ TATAACAAGTTGNCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGACATGGTATCANCCTTATATTGATGCNCCCTGTTTTGATGCATGTAACAATCTGAGACGGAATTGCCACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATGACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA] consensusID : consensus_10788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CGAGACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGCCAAAAAAAAAAAA] [-] EMBL CA763434 [CGAGACAACAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGAATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATGGTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTGATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGCTTGAAGCACTCCGACCAAAATTGCAGCCTACTCAACAGCAAGCACGTTCACGTCGATTTCTTCATGCTTCTGTTGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCAAGCCAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAGTTTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCTTTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGCCAAAAAAAAAAAA] consensusID : consensus_10788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [CCCTCCGATACGCTTAAGGCCGCTTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATTTCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGCCCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAGTGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCTTTTTTGTTCGGGATTTTGCCC-GCTGCTATGCTCATG-CCCATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTTTTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGTAACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCTAAAAAAAAAAAAAAAAAAAANNNNNAAAAAA] [+] EMBL BI805544 [CCCTCCGATACGCTTAAGGCCGCTTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATTTCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGCCCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAGTGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCTTTTTTGTTCGGGATTTTGCCC GCTGCTATGCTCATG CCCATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTTTTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGTAACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCAAAGGAAA ] [+] EMBL C99091 [ AGTTGTCTTTTTTGTTCGGGATTTTGCCCAGCTGCTATGCTCNTGNCCAATTTGTTACTTCGGTAATAAGTACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATTTTTGAATTTTGGGNCATGGTATCATCCTTATATTGATGCT CCCTGTTTTGATG CATGTAACAATCTGAGAC GGAATTGCAACAGGCGTTGTNTTGCACTGAATATCTGAGTAAACAAAAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCTAAAAAAAAAAAAAAAAAAAANNNNNAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10788#0 CCTNTTCGNTCCATTCCCTCTCCTCCTCCNCTCCACCTCCACGNGCTCCTCCCCACCTCG 60 consensus_10788#1 ------------------------------------------------------------ consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 TCTCGAACCCAGNTTGTTGAAACATATACAGTATGTCGGGGAAGCCATCTGATGATACAA 120 consensus_10788#1 ----------------------------------------------------CGAGACAA 8 consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 CAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGA 180 consensus_10788#1 CAGGTCAAGTGAGGCCCGAAGTAGATGGTTCCGATGAGAAAGTAGAAATTGCCAACCAGA 68 consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 ATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATG 240 consensus_10788#1 ATGAAAAAGAGGTGATGCCTTCACCTCAGGAAGAGGAAGCGGCAATAAAGAAAAAGTATG 128 consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 GTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTG 300 consensus_10788#1 GTGGAATAGTTCCCAGAAAGCCAGCGCTTATAGCCAAGGATCATGAGCGAGCTTACTTTG 188 consensus_10788#2 ------------------------------------------------------------ consensus_10788#0 ATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGC 360 consensus_10788#1 ATTCTGCTGATTGGGCTTTGGGGAAGCAAGGAGGACACCCTCAAAAACCTAAAGGGCCGC 248 consensus_10788#2 -------------------------------------CCCTCCGATACGCTTAAGGCCGC 23 ***** * ** * ****** consensus_10788#0 TTGAAG-CACTCCGACCAAAATTGCAGCCTACTCAACAGCA-AGCACGTTCACGTCGATT 418 consensus_10788#1 TTGAAG-CACTCCGACCAAAATTGCAGCCTACTCAACAGCA-AGCACGTTCACGTCGATT 306 consensus_10788#2 TTGAAGACACTCCGACCCAAATTGCAGCCTACTCAACAGCACAGCACGTTCACNTCGATT 83 ****** ********** *********************** *********** ****** consensus_10788#0 TCTTCATGCTTCTGT-TGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCA-AGC 476 consensus_10788#1 TCTTCATGCTTCTGT-TGACAACGAAGAGGGTCTTAATTCACCGACTGAAGATGCA-AGC 364 consensus_10788#2 TCTTCATGCTTCTGGGTGACAACGAAGAGGGTCTTAATTCACCGNCTGAAGATGCACAGC 143 ************** **************************** *********** *** consensus_10788#0 CAGAACCAGGAATCCAATGAGGTCAAGGACGATAAATGATTGCTTTTAACCGATTCCAAG 536 consensus_10788#1 CAGAACCAGGAATCCAATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCAAG 424 consensus_10788#2 CCGAACCNGGAATCCCATGAGGTCAAGGACGAGAAATGATTGCTTTTAACCGATTCCCAG 203 * ***** ******* **************** ************************ ** consensus_10788#0 T-TTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCT 595 consensus_10788#1 T-TTCACCACAAAACCACTGTACGCGGTTTAGATACGAGAATGACTATAACAAGTTGTCT 483 consensus_10788#2 TGTTCACCCCCAAACCCCTGTACGCGGTTTAGATACGAGAATGACTATAACCAGTTGTCT 263 * ****** * ***** ********************************** ******** consensus_10788#0 TTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAG 655 consensus_10788#1 TTTTTGTTCGGGATTTTGCCAGCTGCTATGCTCATGCCAATTTGTTACTTCGGTAATAAG 543 consensus_10788#2 TTTTTGTTCGGGATTTTGCCCGCTGCTATGCTCATGCCCATTTGTTACTTCGGTAATAAG 323 ******************** ***************** ********************* consensus_10788#0 TACTCCGTCGCCTGTAATGCTCGTGCCTCTGTGAGGTTTAGCTGAATTTTGGAAATCATT 715 consensus_10788#1 TACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCATT 603 consensus_10788#2 TACTCCGTCGCCTGTAATGCTCGTGCCCCTGTGAGGTTTAGCTGAATTTTGGAAATCCTT 383 *************************** ***************************** ** consensus_10788#0 TTTGAATTTTGGGACATGGTATCATCCTTATATTGATGCTCCCTGTTTTGATGCATGTAA 775 consensus_10788#1 TTTGAATTTTGGGCCAAAAAAAAAAAA--------------------------------- 630 consensus_10788#2 TTTGAATTTTGGGACCTGGTATCATCCTTATATTGATGCTCCCCTGTTTTGATGCCATGT 443 ************* * * * consensus_10788#0 CAATCTGAGACGGAATTGCAACAGGCGTTGTGTTGCACTGAATATCTGAGTAAACAAAAG 835 consensus_10788#1 ------------------------------------------------------------ consensus_10788#2 AACCATCTGAGACGGGAATTGCCACCGGCGTTGTGTTGCCCTGAATATCTGAGTAAACCA 503 consensus_10788#0 GAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCAGAATAGCCTATG 895 consensus_10788#1 ------------------------------------------------------------ consensus_10788#2 AAGGAAACTTGGAGAGTGATAACCTTTTGTGCTTTATAATGCAGTTATGCNGNATAGCCT 563 consensus_10788#0 ACTATGAGACTGGAAAGTTAAAAAAAAAAAAAAAAA 931 consensus_10788#1 ------------------------------------ consensus_10788#2 AAAAAAAAAAAAAAAAAAAANNNNNAAAAAA----- 594 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||