cluster # 10790

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Oryza sativa
cluster # 10790 cluster # 10790 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10790#0 length = 650 sequences # 6

consensus_10790#1 length = 418 sequences # 1
consensus_10790#2 length = 376 sequences # 1

consensusID : consensus_10790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 650
fasta sequence

                              [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTTGGATTCTCAAAAAAAAAANAANNAAAANANAAAAANNAAAAAAAANCCT]

[+] EMBL AK063694             [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCT                                                    ]
[+] EMBL AU102210             [                   GCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGC                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU078362             [                   GCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGC                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB656387             [                            AAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATC TTTGGATTCTCAAAAAAAAA                                ]
[+] EMBL CA755031             [                                    GCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTNATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACNATTACTACACGGCATGAGGAACANATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTTGGATTCTCAGTTTNNNNANAANNAAAANANAAAAANNAAAAAAAANCCT]
[+] EMBL AU182572             [                                                                                                                                                                                                                                                                                   GCCTGNGTTTGCGGCACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTANCTNCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTNGCGGCGGCGGCTTTGCTNTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTNTTCAAAAAAAATGANAGAATAATTACTGCTCCTACTCTGCTTGNACCTAGTACTACAATTACTACCCGGCATGAGGAACAAATTACTAACTGTAATNAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATC TTTGGATTCTCNAAAAAAAAAAAAAAAAAAa                     ]




>consensus_10790#0
GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG
TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG
TGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCT
CCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGCTCCTCCTCCGGACCGGTGTTCGTCGGTG
GCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGCACCTACCTCT
CCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCT
CGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTAC
GGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGCTC
CTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACT
GTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTT
TGGATTCTCAAAAAAAAAANAANNAAAANANAAAAANNAAAAAAAANCCT

consensusID : consensus_10790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTGGAT]

[+] EMBL AK062474             [GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGGTGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGGTGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCTCCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAATAATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTGGAT]




>consensus_10790#1
GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG
TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG
TGTTCTGCGTCGTCATCCTCTGCCTGTCCGTGCTGTCCATGATCATCTTCGCCGCGGCCT
CCCCCGGCGGGGAGCGGCGGCGGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGC
TAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAATAATTACTGCTCCTACTC
TGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATG
AGATGGAGTTACTGTAAATTGTAATTAAGTCTAATAATAATCATCATCATCTTTGGAT

consensusID : consensus_10790#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTACCTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATCATCATCATCTTTGGATTCTCAGTTGTTAGTATTAGTGCTAAT]

[-] EMBL BI796706             [GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTACCTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATCATCATCATCTTTGGATTCTCAGTTGTTAGTATTAGTGCTAAT]




>consensus_10790#2
GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTACCTCTCCTGATCATCGCC
GTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATCGCTCGCCGCCGGCGAAC
TGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGAAAATCCGTACGGCTAGCTAATTTT
CTTCCTTTTTTTTTCTTCAAAAAAAATGAGAGAATAATTACTGTCCTACTCTGCTTGTAC
CTAGTACTACAATTACTACACGGCATGAGGAACAAATTACTAACTGTAATGAGATGGAGT
TACTGTAAATTGTCAATTAAGTCTAATAATAATCATCATCATCTTTGGATTCTCAGTTGT
TAGTATTAGTGCTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10790#0      GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG 60
consensus_10790#1      GTCGTCTTGGTGCTCATCGGCGGCGAGCAAAAGCGAGCTTGGTGGCCATGGCGAGCTTGG 60
consensus_10790#2      ------------------------------------------------------------
                                                                                   

consensus_10790#0      TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG 120
consensus_10790#1      TGTTCGAGCCCCACGGCGGCGCGGCGGTGGTGGTGGCCGGAGTCGGCGGCGGCGACGTGG 120
consensus_10790#2      -----------------GATCTCTAAGCGGCGAGCTCCGGCGCCTGCGTCTGGGACCTAC 43
                                        *        * ** *    **** * * *** * * *** *  

consensus_10790#0      TGTTCTGCGTCGTCATCCTCTGCCTGT---CCGTGCTGTCCATGATCATCTTCGCCG--C 175
consensus_10790#1      TGTTCTGCGTCGTCATCCTCTGCCTGT---CCGTGCTGTCCATGATCATCTTCGCCG--C 175
consensus_10790#2      CTCTCCTGATCATCGCCGTCGACGTACGGGTCGAGCCAGCTAAAGCTAGCTGCGGCGATC 103
                          **    ** **  * **  * *      ** **   * *     * ** ** **  *

consensus_10790#0      GGCCTCCCCCGGCGGGGAGCG-GCGGCG----GCGGCGGCGCTCCTCCTCCGGACCGGTG 230
consensus_10790#1      GGCCTCCCCCGGCGGGGAGCG-GCGGCG----GCGGCGGCG------------------- 211
consensus_10790#2      GCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCG------------------- 144
                       *  * ** ******    *     ** *    *********                   

consensus_10790#0      TTCGTCGGTGGCAGGGGCTGCGGCTGCGGCGGCCGCAGCTCCGGCGCCTGCGTCTGCGGC 290
consensus_10790#1      ------------------------------------------------------------
consensus_10790#2      ------------------------------------------------------------
                                                                                   

consensus_10790#0      ACCTACCTCTCCTGATCATCGCCGTCGACGTACGGCGTCGAGCCAGCTAAAGCTAGCTGC 350
consensus_10790#1      ------------------------------------------------------------
consensus_10790#2      ------------------------------------------------------------
                                                                                   

consensus_10790#0      GGCGATCGCTCGCCGCCGGCGAACTGTACATGGAGCTTCGCGGCGGCGGCTTTGCTCTGA 410
consensus_10790#1      ------------------------------------------------GCTTTGCTCTGA 223
consensus_10790#2      ------------------------------------------------GCTTTGCTCTGA 156
                                                                       ************

consensus_10790#0      AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAA-TGAGAGAAT 469
consensus_10790#1      AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAAATGAGAGAAT 283
consensus_10790#2      AAATCCGTACGGCTAGCTAATTTTCTTCCTTTTTTTTTCTTCAAAAAAAA-TGAGAGAAT 215
                       ************************************************** *********

consensus_10790#0      AATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 529
consensus_10790#1      AATTACTGCTCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 343
consensus_10790#2      AATTACTG-TCCTACTCTGCTTGTACCTAGTACTACAATTACTACACGGCATGAGGAACA 274
                       ******** ***************************************************

consensus_10790#0      AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGT-AATTAAGTCTAATAATAATC 588
consensus_10790#1      AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGT-AATTAAGTCTAATAATAATC 402
consensus_10790#2      AATTACTAACTGTAATGAGATGGAGTTACTGTAAATTGTCAATTAAGTCTAATAATAATC 334
                       *************************************** ********************

consensus_10790#0      ATCATCATCTTTTGGATTCTCAAAAAAAAAANAANNAAAANANAAAAANNAAAAAAAANC 648
consensus_10790#1      ATCATCATCTTT-GGAT------------------------------------------- 418
consensus_10790#2      ATCATCATCTTT-GGATTCTCAGTTGTTAGTATTAGTGCTAAT----------------- 376
                       ************ ****                                           

consensus_10790#0      CT 650
consensus_10790#1      --
consensus_10790#2      --