These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence [CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM038457 [CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAA ] [+] EMBL AU092785 [ TGACGCCTCACTTCCCCTTCCNTTTCCGGCCCGGCCTACTGTAATTCTGTNAAGATNTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGTTAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCNGAAATTTACTTCCGCATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 454 fasta sequence [GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC-AGGGGAGCAGCAAGGAGGAGGA-GGGGAAGACGACGACGAAGGCGAA-GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC-AGATTATG-TTTTTGTAGCTTCTGTGGCAGATT-AGGTGATGGTTAATCATAT-GGTTATGCTTCCGTAGTGTGTAAAAAA] [+] EMBL AU094989 [GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAAA] [+] EMBL AU029833 [cngngnACGCGTGGGCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCANCAGCACAAAGTGTCAGTNAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTNACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTNAAGCAGCNGGGGGACCAGCAAGGAGGAGGAGGGGGAAAACGACGACGAAG ] [+] EMBL AU164046 [ AAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAAA] [+] EMBL OSC3611 [ AAGAGCAGACAGAGCTGCAGCAGCA CAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGGCTCACTTNCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGCAAGATTATG TTTTTGTAGCTTCTGTGGCAGATTAAGGTGATGGTTAATCATATGGGTAATGCTT ] [+] EMBL C27966 [ GCAGACAGAGCTGCAGCAGCNGANGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAANGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGNCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATGTTTTTTGTAGCTTCTGTGG ] [+] EMBL AU057342 [ CAGAGCTGCAGCAGCAGCAGCACAAAGTGTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATGTCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGATTGCAGCAAGCAGGAGTAGCAGAAGAAGGTGAAGCAGC AGGGGAGCAGCAAGGAGGAGGA GGGGAAGACGACGACGAAGGCGAA GGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATGGCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCTGTAAAGATTTCATCATGC AGATTATG TTTTTGTAGCTTCTGTGGCAGATT AGGTGATGGTTAATCATAT GGTTATGCTTCCGTAGTGTGTAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10828#0 -----------CCGCCCACGCGTCCGGACAGACAGAGCTGCAGCAGCAGCAGCACAAAGT 49 consensus_10828#1 GNNCGGACGCGTGNNCAAAGCTCAAGAGCAGACAGAGCTGCAGCAGCAGCAGCACAAAGT 60 * * ** * ******************************** consensus_10828#0 GTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATG 109 consensus_10828#1 GTCAGTGAGCTCAACTAAACTCTGATTAAGGGTGAAAGCATGGGTTTGTTATGCTGCATG 120 ************************************************************ consensus_10828#0 TCGTCGCACGCCGAGGTGGTCGTCCCCA-GAAGCCCGGCGACTGTGACGACGACGACGAT 168 consensus_10828#1 TCGTCGCACGCCGAGGTGGTCGTCCCCAAGAAGCCCGGCGACTGTGACGACGACGACGAT 180 **************************** ******************************* consensus_10828#0 TGCAGCAAGCACGGAGTAGCAGAAGAAGGTGAAGCAGCACGGGGAGCAGCAAGGAGGAGG 228 consensus_10828#1 TGCAGCAAGCA-GGAGTAGCAGAAGAAGGTGAAGCAGCA-GGGGAGCAGCAAGGAGGAGG 238 *********** *************************** ******************** consensus_10828#0 AGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATG 288 consensus_10828#1 AGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGATGAGCAACCTTGATG 298 ************************************************************ consensus_10828#0 GCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCT 348 consensus_10828#1 GCGCCGGCCTCGTGACGCCTCACTTCCCCTTCCATTTCCGGCCCGGCCTACTGTAATTCT 358 ************************************************************ consensus_10828#0 GTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGT 408 consensus_10828#1 GTAAAGATTTCATCATGCAGATTATGTTTTTGTAGCTTCTGTGGCAGATTAGGTGATGGT 418 ************************************************************ consensus_10828#0 TAATCATATGGTTATGCTTCCGTAGTGTGTAATCTCTTCTTCTCCAGAAATTTACTTCCG 468 consensus_10828#1 TAATCATATGGTTATGCTTCCGTAGTGTGTAAAAAA------------------------ 454 ******************************** consensus_10828#0 CATATATTAACTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 518 consensus_10828#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||