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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1632 fasta sequence
[GGCTGTTCTCCGCTGTGACGTCTCGTCTCTTCCTCCTCCTCAGGAAGTCCAGCGAGTCCACCTCCCTCTCCTGCTCCACCACCACCACCTCCTCCTTCCAAAGATTCCTTCTCTTCTTCTTCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTT-GAGTTTCCGTG-GATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGAGAACATTTATTGCAATT-GGTGCTGCTCGAGCTCTAGCGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCGATTCAAATTTCCAGGCACATCTTG-GTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGGTGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTATGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGCTATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAAACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCAATGATAAGTATTCTGAATCTGAACTAAAAAGAGTA-GTGTTGGTTGGTCTGG-CTTGCACACACAGAGAACCTG-AAA-AGAGACCGACAATGCTCGAAGTTGTATCGAT-GCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCA-TGGAATGTCAACACCA-GAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCA-AGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACA-GGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACA-TGGTGCTTTTTTTGGCAAAGAATTATTATACA-TGGTGCTTTTTGTGTGCA-CTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGATATCTGGATGATTGAATTGTGTTTGTATCTTATGATTGAAACTTCTGCACAACACAGGAG]
[+] EMBL AK058497 [GGCTGTTCTCCGCTGTGACGTCTCGTCTCTTCCTCCTCCTCAGGAAGTCCAGCGAGTCCACCTCCCTCTCCTGCTCCACCACCACCACCTCCTCCTTCCAAAGATTCCTTCTCTTCTTCTTCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTT GAGTTTCCGTG GATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGAGAACATTTATTGCAATT GGTGCTGCTCGAGCTCTAGCGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCGATTCAAATTTCCAGGCACATCTTG GTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGGTGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTATGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGCTATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAAACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCAATGATAAGTATTCTGAATCTGAACTAAAAAGAGTA GTGTTGGTTGGTCTGG CTTGCACACACAGAGAACCTG AAA AGAGACCGACAATGCTCGAAGTTGTATCGAT GCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCA TGGAATGTCAACACCA GAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCA AGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACA GGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACA TGGTGCTTTTTTTGGCAAAGAATTATTATACA TGGTGCTTTTTGTGTGCA CTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGATATCTGGATGATTGAATTGTGTTTGTATCTTATGATTGAAACTTCTGCACAACACAGGAG]
[+] EMBL CF311767 [ TTCCTTCTCTTCTTCTTCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCCCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTT GAGTTTCCGTG GATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTT ]
[+] EMBL C22458 [ TCTCTTCTTCTTCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTTGGAGTTTCCGTG GATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAA ]
[+] EMBL AU056895 [ CGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTTGGAGTTTCCGTGNGATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGNGAACATTTATTGCAATTGGGTGCTGCTCGAGCNCTAGCGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCNACTCGATTCAAATTTCCAGGCACATCTTGNGTGACTTT ]
[-] EMBL CF311768 [ GTATTCTGAATCTGAACTAAAAAGAGTA GTGTTGGTTGGTCTGG CTTGCACACACAGAGAACCTG AAA AGAGACCGACAATGCTCGAAGTTGTATCGAT GCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCA TGGAATGTCAACACCA GAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCA AGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACA GGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACA TGGTGCTTTTTTTGGCAAAGAATTATTATACA TGGTGCTTTTTGTGTGCAaaaaa ]
[+] EMBL BI811183 [ GTATGTTTTGTTT TCTGGCCTTGCACACACAGAG ACCTGTAAATAGAGACCG C ATGCTCGAAGTTGTATCGATGGCTGAAAGGTGAATCTAAAGAGATGCTTT CAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCACTGGAATGTCAACACCACGAGGGGAGCTCGGACTGTGTGCCCCAGAATGATCACAGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACACGGCCTTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTACCAGTTATACACTGGTGCTTTTTTTGGCCAAGAATTATTATACACTGGTGCTTTTTGTGTGCACCTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGAaaaaaaaaa ]
[+] EMBL C22459 [ TCGAT GCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCA TGGAATGTCAACACCA GAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCA AGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACA GGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACA TGGTGCTTTTTTTGGCAAAGAATTATTATACA TGGTGCTTTTTGTGTGCA CTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAAaa ]
consensusID : consensus_10829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[TTCCAGGCTTGAAAATGATGAATTGTTACAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACATGGTGCTTTTTTTGGCAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGAAAAAAAAAAAAAAAAA]
[+] EMBL AU056896 [TTCCAGGCTTGAAAATGATGAATTGTTACAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACATGGTGCTTTTTTTGGCAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10829#0 GGCTGTTCTCCGCTGTGACGTCTCGTCTCTTCCTCCTCCTCAGGAAGTCCAGCGAGTCCA 60
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 CCTCCCTCTCCTGCTCCACCACCACCACCTCCTCCTTCCAAAGATTCCTTCTCTTCTTCT 120
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACC 180
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 CGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGG 240
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGT 300
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 CAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCT 360
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGA 420
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAA 480
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ACCTCTTGAGTTTCCGTGGATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACT 540
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTC 600
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TTGACTGGCGGAGGAGAACATTTATTGCAATTGGTGCTGCTCGAGCTCTAGCGTATCTTC 660
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCG 720
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ATTCAAATTTCCAGGCACATCTTGGTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGG 780
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTA 840
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGC 900
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 TATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAA 960
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCA 1020
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ATGATAAGTATTCTGAATCTGAACTAAAAAGAGTAGTGTTGGTTGGTCTGGCTTGCACAC 1080
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 ACAGAGAACCTGAAAAGAGACCGACAATGCTCGAAGTTGTATCGATGCTGAAAGGTGAAT 1140
consensus_10829#1 ------------------------------------------------------------
consensus_10829#0 CTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTT-CAGGCCAGACTCGACGGTG 1199
consensus_10829#1 -------------TTCCAGGCTTGAAAATGATGAATTGTTACAGGCCAGACTCGACGGTG 47
*************************** *******************
consensus_10829#0 AGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAA 1259
consensus_10829#1 AGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAA 107
************************************************************
consensus_10829#0 GAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGT 1319
consensus_10829#1 GAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGT 167
************************************************************
consensus_10829#0 GGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCATTTG 1379
consensus_10829#1 GGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCATTTG 227
************************************************************
consensus_10829#0 TGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATA 1439
consensus_10829#1 TGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATA 287
************************************************************
consensus_10829#0 CATGGTGCTTTTTTTGGCAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAG 1499
consensus_10829#1 CATGGTGCTTTTTTTGGCAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAG 347
************************************************************
consensus_10829#0 AAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTAT 1559
consensus_10829#1 AAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTAT 407
************************************************************
consensus_10829#0 TCTTTAATGCTGATATCTGGATGATTGAATTGTGTTTGTATCTTATGATTGAAACTTCTG 1619
consensus_10829#1 TCTTTAATGCTGAAAAAAAAAAAAAAAAA------------------------------- 436
************* * * * **
consensus_10829#0 CACAACACAGGAG 1632
consensus_10829#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||