These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1070 fasta sequence [TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA] [+] EMBL AK064695 [TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAG ] [+] EMBL AU173954 [ CACCCAGGCGCAGAAGTGGCTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCTCCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGGAGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACCCCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCGACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCTGGTGCGCCGCCTCC CC CGGCGCCcgcccgc ] [+] EMBL CA998311 [ CCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAA ] [+] EMBL CA998336 [ CCTCCTCCACGGCGTGGACTTCCTGCTCTCCAGCCCCCTGCCACTCGACTAGAGCCATGATCTGAAGGCGAGGCTGGACGAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGCCAGGGATGTCGCGCCGCCGGCGAACGAGGACAGCCTCGAGCTCTTCTCCTCCTACAAGGACCAAATTGG ] [-] EMBL CA762441 [ agaGGACGAGACAAGGGGGATGCAGGAGAGGAAGAAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGACCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTCCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAGACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA] [-] EMBL OS38050 [ cGTGG AT CT ATGG AACGGTCC TTCATCATCAGATCATCTAGTAAA AATTGGCCAC TCTG TCCAAGACCAAAGAAAG TCAGTAGACATCTG ATTGG TTCAATAGTCAG TTTAATGAGGATACGACTGAAG TTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCNATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTCGATATATTAATTAATTTGC ] consensusID : consensus_10842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [GCCCGCCCCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTTAAGATTTAATTAATTTCCCAG] [-] EMBL CB681450 [GCCCGCCCCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAAGAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTACGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTCCTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTATTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATCTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACACGGCGTTATCAGTTAAGATTTAATTAATTTCCCAG] consensusID : consensus_10842#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATNTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACNCGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA] [+] EMBL AU173955 [TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGCTGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAGATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATCTGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATNTGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGAGGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCTTTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACNCGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10842#0 TATCTCCCCTCGCCATCCTTCCTCTCCTTCCCAAGTCTTCCCACCCAGGCGCAGAAGTGG 60 consensus_10842#1 ------------------------------------------------------------ consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 CTCCGGCGGCCGGAAAGTCACCGGCGATTCGGCGGCGCCGGCGGCGGCGGACCCCTTTCT 120 consensus_10842#1 ------------------------------------------------------------ consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 CCACCCCTGCCTTGCTCCCTCCCGTCTCCTCCATCAGCTGACTTAACTACACTCCGTAGG 180 consensus_10842#1 ------------------------------------------------------------ consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 AGATTTTCAGATCGAGATTGCCGGCCATGGCGTCGGGCCTTGTCGTCGCCGCCACCGACC 240 consensus_10842#1 ------------------------------------------------------------ consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 CCCTCCGCGCCTTCCTCGCCTCCGCCGCCGCCTCCCACGACCTCCCCGCTGACCTCCGCG 300 consensus_10842#1 ------------------------------------------------------------ consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 ACCTCGCCTCCTCCCTCGCCGCCCGCTCCGCCGTCCCCTACCGCTCCCTCCGCGACATCT 360 consensus_10842#1 -----------------------------------------------------GCCCGCC 7 consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 GGTGCGCCGCCTCCTCCACGGCGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAA 420 consensus_10842#1 CCTCCGCCGCCTCCTCCACGGGGCCGACTTCCTGCTCTCCAGCCCCAAGCCACGCGACAA 67 consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 GAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTA 480 consensus_10842#1 GAGCGATGAGCTGAAGGCGAGGCTGGACAAGCTCAGGGAGATGCAGGAGAGGAAGGAGTA 127 consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 CGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTC 540 consensus_10842#1 CGCCGAACTCGTCAGGGATGTCGCGCCGCCGGCGAAGGAGGACAGCCCCGAGCTCTTCTC 187 consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 CTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTA 600 consensus_10842#1 CTCCTACAAGGACCAGATTGGATTTGGTCTTCATGTTGTTCTTATAATGTTCACGGGTTA 247 consensus_10842#2 ------------------------------------------------------------ consensus_10842#0 TTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 660 consensus_10842#1 TTTGGTTGGATTTGTTGCTTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 307 consensus_10842#2 ------------------TTTCAGAGCTCTGTTCAACAACAGTCCTGTAATGAATGCTGC 42 ****************************************** consensus_10842#0 TGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 720 consensus_10842#1 TGGAGGCATCTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 367 consensus_10842#2 TGGAGGCATNTTAGGATTAGTCGGTGGCATGCTGATGGAAACGGTTCTTTTCATCATCAG 102 ********* ************************************************** consensus_10842#0 ATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 780 consensus_10842#1 ATCATCTAGTAAAGAATTGGCCACTTCTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 427 consensus_10842#2 ATCATCTAGTAAAGAATTGGCCACTTNTGTTCCAAGACCAAAGAAAGTTCAGTAGACATC 162 ************************** ********************************* consensus_10842#0 TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATC 840 consensus_10842#1 TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTCTGATC 487 consensus_10842#2 TGTTTTGGTTTCAATAGTCAGTTTTAATGAGGATACGACTGAAGTTTTTACCTTNTGATN 222 ****************************************************** **** consensus_10842#0 TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 900 consensus_10842#1 TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 547 consensus_10842#2 TGAAGTGAACAATACGAATGATGAGAAACATGTTGTAAATGTAGCCGATAAGTGATCCGA 282 ************************************************************ consensus_10842#0 GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCT 960 consensus_10842#1 GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCGCGATGGGATGAAAATGTAATTATCT 607 consensus_10842#2 GGGGTCACATCAGGAGGAGTTATTTGTGGAGTCCNCGATGGGATGAAAATGTAATTATCT 342 ********************************** ************************* consensus_10842#0 TTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACA 1020 consensus_10842#1 TTAGTTTTGTCGATGTTCTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACA 667 consensus_10842#2 TTAGTTTTGTCGATGTTNTATGCCAGTGCACAATCTGTCTGATCAGGATAATATATTACN 402 ***************** ***************************************** consensus_10842#0 CGGCGTTATCAGTCGATATATTAATTAATTTGCCAGCTGGGTTGTCAAAA 1070 consensus_10842#1 CGGCGTTATCAGTTAAGAT-TTAATTAATTTCCCAG-------------- 702 consensus_10842#2 CGGCGTTATCAGTCGATATATTAAAAAAAAAAAAA--------------- 437 ************* * ** **** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||