These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 713 fasta sequence [GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCCACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTCAGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA-AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT-ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG-GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT-GCAATAATTCTGCA-GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA-AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC-ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT] [+] EMBL AK058263 [GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCCACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTCAGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCGGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGT ] [+] EMBL CA764967 [ AAAGCATCGTATCGCGATCGCGCGTGCGATTGTGAAGGATCCCAAGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAGTTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAGATGTAAATGCAGCAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT] [+] EMBL BI802497 [ GTTTGTCTACAATACAAAATGCGGATTTGATCGCAGTCGTCATAGAATGGAGTGATCATCGAGAAGGGAAAGCACGAT ACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCATAGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCTATATATATATATGTAACACGGATCATAGATACCC AATAGATGATGATTATGATTAaaaa ] [+] EMBL BI811993 [ GTCGTCA AGAATGGAGTGATCATCGAGAAGGGAAAGCACGATCACCTTGATGAACATCAAGGATGGC CCTACGCCTCCCTCGTCCCCCTTCATTCA CAGCTTCTTCATA CCCCCGTTTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGCCACACACCCTCCCAATAATTCTCCACGGTGCTAGTCTTTGTTCCTCTTTTGATGCCATACATAACTGCTTATAGCC AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGC AC AGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAAC CGGATCATAGATACCCAAtaaa ] [-] EMBL CB663357 [ ATTCAGCAGCTTCTTCATAGCCGCCG GTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACTCT GCAATAATTCTGCA GGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTC ATATATATATATGTAACACGGATCATAG ] consensusID : consensus_10847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 507 fasta sequence [AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCANAGACGCGCTGGACAGAGTGAT-GTCAACCGGACAACCGTGATCGTTGCTCA-CCGTTTGTCTACAATA-CAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGT-GATCATCGAGAAGGGAAAGCA-CGATACCTTGATGAACAT-CAAGGATGGCGCCTACGCCTCCCTCGTCGCCC-TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT-GCAATAATTCTGCAGGTGCTAGTC--T-TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA-AGAGGGAAAGGCTATACAGATAGTAAGGA-CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA] [+] EMBL BM420368 [AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCANAGACGCGCTGGACAGAGTGAT GTCAACCGGACAACCGTGATCGTTGCTCA CCGTTTGTCTACAATA CAAATGCGGATTTGATC CAGTCGTCAAGAATGGAGT GATCATCGAGAAGGGAAAGCA CGATACCTTGATGAACATCCAAGGATGGCGCCTACGCCTCCCTCGTCGCCC TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACAC CTCGCAATAATTCTGCAGGTGCTAGTCCNN TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCA AGAGGGAAAGGCTATACAGATAGTAAGGA CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAA CCGGATCATAGATCACCCAATAGATGATGATTATGATTAAAAAAA ] [+] EMBL BQ908299 [ CGCTGGATGCTGAATCCGAAAGGGTGGTTCA AGACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCCGTTTGTCTACAATACCAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGT GATCATCGAGAAGGGAAAGCA CGATACCTTGATGAACAT CAAGGATGGCGCCTACGCCTCCCTCGTCGCCC TTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAACTGGCACACACACT GCAATAATTCTGCAGGTGCTAGTC TCTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCC AGAGGGAAAGGCTATACAGATAGTAAGGA CCAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAA ] [+] EMBL BI813460 [ cccaAGTCGTCAAGAATGGAGTGGATCATCGAGAAGGGAAAGCACCGATACCTTGATGAACAT CAAGGATGGCGCCTACGCCTCCCTCGTCGCCCATTCATTCAGCAGCTTCTTCATA CCCCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACCGAACTGGCACACACACT GCAATAATTCTGCAGGTGCTAGTC T TTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCACAGAGGGAAAGGCTATACAGATAGTAAGGACCCAATGTAAATGCAACCAGTTGGTCCTTAACATATATATTAATTCATATATATATATGTAACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10847#0 GGAAGGAGGGAGAAGCAACAGAATCAGAAATCATTGAAGCAGCCAAATTGGCAAATGCCC 60 consensus_10847#1 ------------------------------------------------------------ consensus_10847#0 ACAAGTTCATTAGTTCCTCGCATCAGGGTTATGGCACAACAGTTGGAGAGCGGGGAGCTC 120 consensus_10847#1 ------------------------------------------------------------ consensus_10847#0 AGTTGTCTGGAGGCCAAAAGCAGCGTATCGCGATCGCTCGTGCGATTGTGAAGGATCCCA 180 consensus_10847#1 ------------------------------------------------------------ consensus_10847#0 AGATCCTTCTGCTGGATGAAGCAACCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTC 240 consensus_10847#1 ---------------------AACCCAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTC 39 * ************************************ consensus_10847#0 AA-GACGCGCTGGACAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTG 299 consensus_10847#1 ANAGACGCGCTGGACAGAGTGATG-TCAACCGGACAACCGTGATCGTTGCTCACCGTTTG 98 * ********************* *********************************** consensus_10847#0 TCTACAATACAAAATGCGGATTTGATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAG 359 consensus_10847#1 TCTACAATACAAA-TGCGGATTTGATCGCAGTCGTCAAGAATGGAGTGATCATCGAGAAG 157 ************* ********************************************** consensus_10847#0 GGAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTT 419 consensus_10847#1 GGAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGTCGCCCTT 217 ************************************************************ consensus_10847#0 CATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACAT 479 consensus_10847#1 CATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACAT 277 ************************************************************ consensus_10847#0 ATATTAACAGAACTGGCACACACACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTC 539 consensus_10847#1 ATATTAACAGAACTGGCACACACACTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTC 337 ************************************************************ consensus_10847#0 TTTTGATGGCATACATAACTGCTTATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGA 599 consensus_10847#1 TTTTGATGGCATACATAACTGCTTATAGCCAAGAGGGAAAGGCTATACAGATAGTAAGGA 397 ************************************************************ consensus_10847#0 CCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGT 659 consensus_10847#1 CCAA-TGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATATATATATGT 456 **** ******************************************************* consensus_10847#0 AACACGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGT 713 consensus_10847#1 AACCCGGATCATAGATACCCCAATAGATGATGATTATGATTAAAAAAAAAA--- 507 *** **************** ********************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||