These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1643 fasta sequence [GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC-GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC-GG-ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC-TCC-TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGACGCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAGCCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTCCACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTCGTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCATCGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGTGTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGGCCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCCTTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCCGCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGA-CGCCGGGACAATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTT-CCGGGGCAGGGTG-CGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAAAACGATCCGATTAAATTCAAAAA] [+] EMBL AK110957 [GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC TCC TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGACGCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAGCCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTCCACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTCGTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCATCGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGTGTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGGCCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCCTTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCCGCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGA CGCCGGGACAATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTT CCGGGGCAGGGTG CGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATAT ] [+] EMBL AU222703 [ GACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC TCC TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCC ] [+] EMBL OSS1364A [ CCGCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTNAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGG ] [+] EMBL OSS1263A [ CCGCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTNAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GGTACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGG ] [+] EMBL AU029508 [ CAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAACGGGCA TGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGCGGG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGC GGCCTTGGCACGCCGGCGCAGACGCTTCCTTCGTG ] [+] EMBL AU029509 [ CGACCCCCGGGACAATTTTCACGCGGCTT CCCCCCCCGTTTACGCCCCCTTGCCCGACGCNTTCCCGGGGCAGGGTGCCGCAC CCGTTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCTTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACA CTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAAAACGATCCGATTAAATTCAAAAA] [+] EMBL AU161612 [ TGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTAaaaaa ] consensusID : consensus_10851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGNCGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTTTTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAATTATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAAAACGATCCGATTNAATTCAAAAAAAAAAA] [+] EMBL AU091492 [TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGNCGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTTTTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAATTATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAAAACGATCCGATTNAATTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10851#0 GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATT 60 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 ACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAACGGCAGTGAGCAGCTCAAC 120 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTG 180 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GGCCGCGTCCGTAGCCGCCCAGTCGGCGGCGGACACGGCGCGCATCGTCAGCATGCTCAC 240 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCC 300 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 ACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGC 360 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GGGCCTCGGCACGCCGGCGCAGACGCTCCTCGTGGCCATCGACCCCAGCAACGACGCGGC 420 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGAC 480 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAG 540 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTC 600 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTC 660 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCAT 720 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGT 780 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGG 840 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCC 900 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 TTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCC 960 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGACGCCGGGAC 1020 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 AATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTTCCGGGGCAG 1080 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GGTGCGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGT 1140 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGA 1200 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 GAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCC 1260 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACG 1320 consensus_10851#1 ------------------------------------------------------------ consensus_10851#0 CGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTG 1380 consensus_10851#1 --------TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTG 52 *************** ** ***** ************ **** ********* consensus_10851#0 ATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGG 1440 consensus_10851#1 ATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGN 112 *********************************************************** consensus_10851#0 CGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTT 1500 consensus_10851#1 CGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTT 172 ************ ******** **************** ********** ********** consensus_10851#0 TTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAAT 1560 consensus_10851#1 TTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAAT 232 ********************* ***** * ********************** *** consensus_10851#0 TATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAA 1620 consensus_10851#1 TATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAA 292 ***** ******************************************** ***** consensus_10851#0 AACGATCCGATTAAATTCAAAAA------ 1643 consensus_10851#1 AACGATCCGATTNAATTCAAAAAAAAAAA 321 ************ ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||