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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1643 fasta sequence
[GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC-GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC-GG-ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC-TCC-TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGACGCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAGCCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTCCACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTCGTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCATCGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGTGTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGGCCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCCTTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCCGCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGA-CGCCGGGACAATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTT-CCGGGGCAGGGTG-CGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAAAACGATCCGATTAAATTCAAAAA]
[+] EMBL AK110957 [GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC TCC TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGACGCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAGCCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTCCACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTCGTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCATCGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGTGTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGGCCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCCTTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCCGCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGA CGCCGGGACAATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTT CCGGGGCAGGGTG CGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATAT ]
[+] EMBL AU222703 [ GACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGCGGGCCTCGGCACGCCGGCGCAGACGC TCC TCGTGGCCATCGACCCCAGCAACGACGCGGCGTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCC ]
[+] EMBL OSS1364A [ CCGCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTNAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGG ]
[+] EMBL OSS1263A [ CCGCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAAC GGCAGTNAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGC GGTACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGG ]
[+] EMBL AU029508 [ CAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATTACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAACGGGCA TGAGCAGCTCAACGCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTGGGCCGCGTCCGTAGCCGCCCAGTCGGCGGCGGG ACACGGCGCGCATCGTCAGCATGCTCACGTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCCACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGC GGCCTTGGCACGCCGGCGCAGACGCTTCCTTCGTG ]
[+] EMBL AU029509 [ CGACCCCCGGGACAATTTTCACGCGGCTT CCCCCCCCGTTTACGCCCCCTTGCCCGACGCNTTCCCGGGGCAGGGTGCCGCAC CCGTTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCTTCTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGAGAACGTGATGATCCACA CTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCCCTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACGCGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAAAACGATCCGATTAAATTCAAAAA]
[+] EMBL AU161612 [ TGTATTGTACGTACGTACTAGCTTGGCCGTCAGGCGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTTTTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAATTATGTAGCATATGTGATACTGTAaaaaa ]
consensusID : consensus_10851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGNCGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTTTTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAATTATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAAAACGATCCGATTNAATTCAAAAAAAAAAA]
[+] EMBL AU091492 [TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTGATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGNCGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTTTTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAATTATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAAAACGATCCGATTNAATTCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10851#0 GCTTGACACGCCCTCAATTTCTCACACCAGAAGCAAAGCAATCATGTCACTCCTTGCATT 60
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 ACCACTCCTAGCCTTCTTGTCCATATTCTTGACTCCTACAACGGCAGTGAGCAGCTCAAC 120
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GCTGCAGCTGGCACGTTCTCACTCGGTGACGCCCAATGCCGGGGCGCCGCTCAGCGCGTG 180
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GGCCGCGTCCGTAGCCGCCCAGTCGGCGGCGGACACGGCGCGCATCGTCAGCATGCTCAC 240
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GTCGGGGGCGGGGCCTCTGACGACCAGAGCCAAGCCCAAACCCAAGAACAGGGCAAACCC 300
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 ACCCGTGCCGATCGCGCCGGGGCGTCAGATCCTCAGCATCCCGAACTACATCGCCCGCGC 360
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GGGCCTCGGCACGCCGGCGCAGACGCTCCTCGTGGCCATCGACCCCAGCAACGACGCGGC 420
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GTGGGTGCCATGCAGCGCCTGCGCCGGCTGCGCCGCCTCGTCGCCGTCCTTCTCCCCGAC 480
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GCAGTCGTCCACGTACCGCACCGTGCCCTGCGGCTCGCCGCAGTGCGCGCAGGTGCCCAG 540
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CCCGTCCTGCCCCGCGGGCGTCGGCTCCTCCTGCGGGTTCAACCTCACCTACGCGGCGTC 600
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CACGTTCCAGGCCGTGCTCGGGCAGGACTCGCTGGCCCTCGAGAACAACGTCGTCGTGTC 660
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GTACACCTTCGGGTGCCTCCGTGTCGTCAGCGGCAACTCCGTGCCGCCGCAGGGGCTCAT 720
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CGGCTTCGGCCGCGGGCCGCTCTCCTTCTTGTCGCAGACCAAGGACACGTACGGCTCCGT 780
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GTTCTCCTACTGCCTCCCGAACTACAGGTCGTCTAACTTCTCCGGCACACTAAAGCTCGG 840
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CCCCATCGGGCAACCCAAGAGGATCAAGACGACGCCGTTGCTCTACAACCCTCATCGCCC 900
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 TTCACTCTACTACGTCAACATGATCGGGATCCGCGTCGGCAGCAAGGTCGTGCAAGTCCC 960
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GCAATCCGCGCTCGCGTTCAACCCGGTCACGGGCAGCGGCACCATCATCGACGCCGGGAC 1020
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 AATGTTCACGCGGCTTGCCGCCCCGGTGTACGCCGCCGTGCGCGACGCGTTCCGGGGCAG 1080
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GGTGCGCACGCCGGTGGCGCCGCCGCTGGGCGGGTTCGACACGTGCTACAACGTGACCGT 1140
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CTCGGTGCCTACCGTCACGTTCATGTTCGCCGGGGCGGTCGCCGTGACGCTGCCGGAGGA 1200
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 GAACGTGATGATCCACAGCTCGTCGGGCGGCGTCGCGTGCCTGGCGATGGCCGCGGGGCC 1260
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CTCGGACGGCGTGAACGCGGCGCTCAATGTGCTGGCCAGCATGCAGCAGCAGAACCAACG 1320
consensus_10851#1 ------------------------------------------------------------
consensus_10851#0 CGTGCTGTTCGACGTCGCCAACGGCCGCGTCGGCTTCTCCCGTGAGCTTTGCACGGCCTG 1380
consensus_10851#1 --------TCGACGTCGCCAACGNCCNCGTCGNCTTCTCCCGTGANCTTTNCACGGCCTG 52
*************** ** ***** ************ **** *********
consensus_10851#0 ATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGG 1440
consensus_10851#1 ATCGATCACTGTGCGAATTGCGTAATTGTATTGTACGTACGTACTAGCTTGGCCGTCAGN 112
***********************************************************
consensus_10851#0 CGTTCGACTTTTGGCTTACCATTCATGAGCTCATGCCACAGTTCATCTAGTATGTTATTT 1500
consensus_10851#1 CGTTCGACTTTTNGCTTACCANTCATGAGCTCATGCCANAGTTCATCTANTATGTTATTT 172
************ ******** **************** ********** **********
consensus_10851#0 TTAAACGCTGAGTTAGTAAATAAGGATTGTAATAGGTGATTTCGTGTGGGTTAAATCAAT 1560
consensus_10851#1 TTAAACGCTGAGTTAGTAAATNNNNATTGTNNTNGGTGATTTCGTGTGGGTTAAATTAAT 232
********************* ***** * ********************** ***
consensus_10851#0 TATGTAGCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTAGAGAATGAA 1620
consensus_10851#1 TATGTNNCATATGTGATACTGTATGTGGCTTGTTTGGTCCTTGTCTCGTTANNNNATGAA 292
***** ******************************************** *****
consensus_10851#0 AACGATCCGATTAAATTCAAAAA------ 1643
consensus_10851#1 AACGATCCGATTNAATTCAAAAAAAAAAA 321
************ **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||