These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 766 fasta sequence [GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCCCGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCG---TTTTCCCGC-GCGACCAGC-TCGACCA--TCC--CCGGCAA-CC-AGACGGTTCGGG-CCGGGA-CCCCGAG-CCAGCCC-TCAGA-CCAA-TCCTT-TTCCCGAAG-TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC-GTGGACGGTACTCGGTCCTCCGGATTTTCAA-GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC-GGCCGCTGGACC-CTACCTCCGGCTGAACCGTTTCCAGGGTT-GC-GGCCG-TTAAGCAGAAAAGATAACTCTTCCCGAGGC-CCCC-GCC-GGC-GTCTCC-GGACTTCCTAACGTCGCC-GTCAACC-GCCAC-GTCCC-GGCTCGGGAAATCTTAACCCGATTCCCTTTC-GGGGCAC-GC-GC-GT-GTC-GCGCTCTCTGCC-GGGGTTACCCC-GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC-GCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCT-TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT] [+] EMBL BI799077 [GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCCCGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCG TTTTCCCGC GCGACCAGC TCGACCA TCC CCGGCAA CC AGACGGTTCGGG CCGGGACCCCCGAG CCAGCCC TCAGA CCAA TCCTT TTCCCGAAG TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACCAGCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGG ] [+] EMBL BI807263 [ CGAGGGCC GTCCCGTC GT CCCCG C GCACGCGCG CCG CTCT CCGC GCGA CAGC TCGACCAG TCC NCCGC A CC GACGGTTC GG CC GGA CCCCGAGCCCAGCCC TCAGA CCAA TCCTT TTCCCGAAG TTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGTCCAGA GCTGTTCACCTTGGAGACCTGAT CGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGAC CCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTT GC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCtggg ] [+] EMBL BI799868 [ tcgtCCCCGCCCGGCATCCGCGCCCGGCTTTTTGCCGCGGCGGACAGCTTCGACAG TCCCGCCGCCAA CC CGACGGTTCGGGCCCGGGA CCCCGAC CCACCCCTTCAGACCCAA TCCTT TTCCCGAAG TTACGGATCCG TTTGCCGACTT CCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGG ] [+] EMBL BI794947 [ cgtCCCCGCC GC ACCGCGCCGC TCTCCCCGC GCGACCAGC TCGACCAAGTCC CCGCCAACCC TGACGGTTCGGGTCCGGGACCCCCGAGCCCAGCCC TCAGA CCAATTCCTTGTTCCCGAAGTTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCA TGGCCAGA GCTGTTCACCTTGGAGACCTGAT CGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCC CCGGGGGCGCACCGGACACCGCGCGACGT CGGTGCTCTTCC GCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCAGGGTT GC GGCCG TTAA CAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGC GTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GTGGTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCA ] [+] EMBL BI806686 [ ctccGCAG CCGANACGGTTCGGGCCCGGGA CCCCGAG CCAGCCC TCAGA CCAA TCCTT T CCGAA TTAC GATCC TTT CCGACTTCCCTTGCCTACATTGTTCCATT GCCAGA GCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGGTGGACGGTACTCGGTCCTCCGGATTTTCAA GGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCC GGCCGCTGGACC CTACCTCCGGCTGAACCGTTTCCA GGTT GC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGC CCCC GCC GGCAGTCTCC GGACTTCCTAACGTCGCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTC GCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGAC GCC GCTCCGCCC GGCTCGCG CCCTGGTTTTG ] [+] EMBL BI798987 [ gGGC CCGGAA CCCCGAG CCAGCCT TCAGA CCAA T CTT TTCCCGAAG TTACGGATCCG TTTGCCGACTT CCTTGCCTACATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGC GTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCAGGCCGCTGGACCACTACCTCCGGCTGAACCGTTTCCAGGGTTGGC GGCCG TTAAGCAGAAAAGATAACTCTTCCCGAGGCACCCCAGCCAGGC GTCTCCAGGACTTCCTAACGTCGCCAGTCAACCAGCCACAGTCCCAGGCTCGGGAAATCTTAACCCGATTCCCTTTCAGGGGCACAGCAGCAGT GTCAGCGCTCTCTGCCAGGGGTTACCCCAGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCC GCTCCGCCCGGGCTCGCGCCCCGG ] [+] EMBL BI796013 [ GCTGGACC CTACCTC GCTGAACCGTTTGCA GGTT GCGGGCCGTTTAAGCAG AAAGATAACTCTTCCCGAGG CCCC GCC GGC GTCTCC GGACTTCCTAACGTCTCC GTCAACC GCCAC GTCCC GGCTCGGGAAATCTTAACCCGATTCCCTTTC GGGGCAC GC GC GT GTC GCGCTCTCTGCC GGGGTTACCCC GTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCAGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCT TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT] consensusID : consensus_10855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCATTGCCAGAGCTGTTCACCTTGGAGACCTGATCGGTTATGAGTACGACCGGGCGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGGCACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCAANC] [-] EMBL BI799134 [GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCATTGCCAGAGCTGTTCACCTTGGAGACCTGATCGGTTATGAGTACGACCGGGCGTGGACGGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACGTGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGGGCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTAACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGGCACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCGCGCCGCTCTAGAGATCCAANC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10855#0 GTTTATTAACCTCGATCCCTGCCGACCAGTCGAGTCGCTGTCACGCCCCCGGGAGGCCCC 60 consensus_10855#1 ------------------------------------------------------------ consensus_10855#0 CGAGGGCCTTTCCCGTCTGTCACCCCGGCCGGCAACCGCGCCCGTTTTCCCGCGCGACCA 120 consensus_10855#1 ------------------------------------------------------------ consensus_10855#0 GCTCGACCATCCCCGGCAACCAGACGGTTCGGGCCGGGACCCCGAGCCAGCCCTCAGACC 180 consensus_10855#1 ------------------------------------------------------------ consensus_10855#0 AATCCTTTTCCCGAAGTTACGGATCCGTTTTGCCGACTTCCCTTGCCTACATTGTTCCAT 240 consensus_10855#1 ------------------GTCTTTTGGANATGCACGTGTCCCTTGCCTACATTGTTCCAT 42 * * *** ********************** consensus_10855#0 TGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGAC 300 consensus_10855#1 TG-CCAGAG-CTGTTCACCTTGGAGACCTGAT-CGGTTATGAGTACGACCGGGCGTGGAC 99 ** ****** ********************** *************************** consensus_10855#0 GGTACTCGGTCCTCCGGATTTTCAAGG-CCGCCGGGGGC-GCACCGGACACCGCGCGACG 358 consensus_10855#1 GGTACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCAGCACCGGACACCGCGCGACG 159 *************************** *********** ******************** consensus_10855#0 TGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGC--G 416 consensus_10855#1 TGCGGTGCTCTTCCGGCCGCTGGACCCTACCTCCGGCTGAACCGTTTCCAGGGTTGGCGG 219 ******************************************************** * consensus_10855#0 GCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTA 476 consensus_10855#1 GCCGTTAAGCAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGGCGTCTCCGGACTTCCTA 279 ************************************************************ consensus_10855#0 ACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGG 536 consensus_10855#1 ACGTCGCCGTCAACCGCCACGTCCCGGCTCGGGAAATCTTAACCCGATTCCCTTTCGGGG 339 ************************************************************ consensus_10855#0 CACGCGCGTG-TCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCAT 595 consensus_10855#1 CACGCGCGTGGTCGCGCTCTCTGCCGGGGTTACCCCGTCCCTTAGGATCGGCTTACCCAT 399 ********** ************************************************* consensus_10855#0 GTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAA 655 consensus_10855#1 GTGCAAGTGCCGTTCACATGGAACCTTTCTCCTCTTCGGCCTTCAAAGTTCTCATTTGAA 459 ************************************************************ consensus_10855#0 TATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGG 715 consensus_10855#1 TATTTGCTACTACCACCAAGATCTGCACCGACG-CCGCTCCGCCCGGGCTCGCGCCCCGG 518 ********************************* ************************** consensus_10855#0 GTTTTGCGCGCCGCT-TAGAGATCCAAGCTACGACGCGTGCATGCGACGTAT 766 consensus_10855#1 GTTTTGCGCGCCGCTCTAGAGATCCAANC----------------------- 547 *************** *********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||