These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 968 fasta sequence [TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAA--------ATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT-TGTTCAGCTTTATGCCTGGCTTCAC-GCAG-AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC-AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC-GTCTTGGTGAT-GGA-GGGCTTCTACGCCTCCTAGGAGTTGGGGACT-GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCGACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTG] [-] EMBL BI812545 [TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAA ATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTGGAATTCTTTCCAA TCTAAAAATCG TCTAGCTCTTTCTGCTG TGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCTGTG TCAGCTTTATGCCTGGCTTCACGGCAGAAGCCGTTTC ] [+] EMBL CB626893 [ tGTGATAGATACATTATAATAAAATATAACACATCCACCAAAAATCCATTATATCTTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCAAATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCTATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGTTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAGACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTC CTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGAC ] [-] EMBL AU029423 [ ttTTTCTACGCATCG GTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAATCGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTTCGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGGTCTTGGTGATGGGAGGGGCTT TANGCCTCCTANGAGTTGGGGACTGGGCTTCT TCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGAT GG TCCGA ] [-] EMBL AU032010 [ TTTT TGTTCAGCTTTATGCCTGGCTTCAC GCAG AGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCATCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCG ] [-] EMBL AK109197 [ ATCAACCTCATAAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTC AACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCGCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTG] [-] EMBL OSR31321A [ CGTTTTATTTCATTTTTGATGTCCTCGGAGTTCAAACGGNCCTCAACATTTTTTCTTATAGATTCTTCAAACTCTTCGAGCGAGCTCCTCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTTTGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTC GTCTTGGTGAT GGA GGGCTTCTACGCCTCCTAGGAGTTGGGGACT GGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCG ] consensusID : consensus_10859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [ATCCCAAAAACTCACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAGCATGCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACCGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGACGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTTACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACCAAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCGTGCCACT] [+] EMBL AK064164 [ATCCCAAAAACTCACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAGCATGCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACCGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCGCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCGTGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGACGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTTACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACCAAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCGTGCCACT] consensusID : consensus_10859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [AAANCTTAAACCTCNAGGAGCTCCTCTTAAGTACTTCAGGTNAGCTTCCTTTTGGCGCTTTTCTTATCNCCTTCTTCTTTTTNCTCTNAATTAAATTGTTTGCTCTGATACATGACTTGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTTCTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACCCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC] [-] EMBL C74081 [AAANCTTAAACCTCNAGGAGCTCCTCTTAAGTACTTCAGGTNAGCTTCCTTTTGGCGCTTTTCTTATCNCCTTCTTCTTTTTNCTCTNAATTAAATTGTTTGCTCTGATACATGACTTGGCTGCAGGAGTTATTTACAGTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTTCTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGTGTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGGGAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACCCTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10859#0 TTTTTCGTCAGCAAGTGATAGATACATTATAATAAAATATAACACATCCACCAAAATATC 60 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 TTGAGACAGAGCGAGTATGCCTAATCTTGTCAGATGAAACAGATCATAATACTGAAACCA 120 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 AATCAACGGTTATTCTTCCCAAGTAATTTCATCTGATTAGCTCTATCTTCCTCCTCCTCT 180 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 ATCTTCTTTCTACGTATCGCGTCTTCCCTTTGCTTTTGAATTCTTTCCAACTCTAAAAAT 240 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 CGCTCTAGCTCTTTCTGCTGTTGTTCCAGTGCTTCTTTTCTTTGAGCTTCCTCTACTTTT 300 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 CGCCGATTCTCCTCAAGCATCCTATCCAACTCCTCCCTCTCTCTTCTTTCTTGTTCAGCT 360 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 TTATGCCTGGCTTCACGCAGAGCCGTTTCCTTCTCTTTTTGTAGCTGAGCATCAACCTCA 420 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 TCAAATAACTGCTTGATGCCTTCCTCAACTCGCCGTTTTATTTCATTTTTGATGTCCTCG 480 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 GAGTTCAAACGGTCCTCAACATTTTTTCTTATAGATTCTTCAACTCTTCGAGCGAGCTCC 540 consensus_10859#2 ---------------------------------AAANCTTAAACC--TCNAG-GAGCTCC 24 consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 TCTTCAAGTAACTTCAGTTCAGCTTCCTTTTGGCGCCTTTTCTTATCTCCTTCTTCTTTT 600 consensus_10859#2 TCTT-AAGTA-CTTCAGGTNAGCTTCCTTTTGGCGC-TTTTCTTATCNCCTTCTTCTTTT 81 consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 TGCTTCTCAATTAAATTGTTTTGCTCTGATACATGACTTGGGCTGCAGGAGTTATTTACA 660 consensus_10859#2 TNCT-CTNAATTAAATTGTTT-GCTCTGATACATGACTTGG-CTGCAGGAGTTATTTACA 138 consensus_10859#1 ------------------------------------------------------------ consensus_10859#0 GTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTT 720 consensus_10859#2 GTGGAACTTGTATTGCTTCGACTTCTCCGTCTTCGTTGTCGTCTTGGTGATGGAGGGCTT 198 consensus_10859#1 -----ATCCCAAAAACTC--ACCCCAGCGGGTACTGTACCAGAGCCCGAACAGAAG-CAT 52 * * ** ** * ** * * * * * ** * * * consensus_10859#0 CTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGT 780 consensus_10859#2 CTACGCCTCCTAGGAGTTGGGGACTGGCTTCTCTCCCATCTTGGAGAAGGAGACCGACGT 258 consensus_10859#1 GCGCAGATTGGGGAGGATGGAGAGACAGTGAGCGGGGTAATCGGGGATGCGTACC---GT 109 * * * * *** ** * * * ** ** * *** ** consensus_10859#0 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCCGACCGCGGG 840 consensus_10859#2 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGG 318 consensus_10859#1 GTGGAGGTGTAGGGGGATCGGCTCCGATCTCGTCGACTCCGCCGGTTCCCATACCGCGGG 169 ************************************************** ******** consensus_10859#0 GAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCG 900 consensus_10859#2 GAAGGGGAGCGGCGCCGACGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATACC- 377 consensus_10859#1 GAAGGGGAGCGGCGCCGGCGGTGCGACGGCGGCGACCGAGACACCGCACGCGGCATCCCG 229 ***************** ************************************** ** consensus_10859#0 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCG 960 consensus_10859#2 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCNCCCACGCGTTCTC-------- 429 consensus_10859#1 CTCCGCGTGGCAGCCGGCACGAACAAGCACAACGGCGCCGCCGGTCTGACTTGGTCACCG 289 ************************************** ** * ** consensus_10859#0 TGCTAGTG---------------------------------------------------- 968 consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 TGCTAGTGCTGGGACTGGAGGAGCGGAGAGCGGGTGGGCCGGTGGAGCAATACGGCAAGA 349 consensus_10859#0 ------------------------------------------------------------ consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 CGATGCAGCGCCGCGGCGGCCTAAGATCCCTAGGGTTTGCGGCGCCTGGGCCGACTGGTT 409 consensus_10859#0 ------------------------------------------------------------ consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 ACTACATCTAATTCAAACCCACTCCAACCCAAAACATTTTTCCTCGGGTTAATTTGTACC 469 consensus_10859#0 ------------------------------------------------------------ consensus_10859#2 ------------------------------------------------------------ consensus_10859#1 AAGCCACCGCAAATTTGGCTATTCAGAAAAAAGTCATTACAATTTATGTATTCATAACCG 529 consensus_10859#0 ------- consensus_10859#2 ------- consensus_10859#1 TGCCACT 536 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||