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Oryza sativa
cluster # 1086 cluster # 1086       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1086#0 length = 1905 sequences # 2  

consensusID : consensus_1086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1905
fasta sequence
                              [CCAAGTTTTAGGAAAGTTGAGAAATGCAGTGAAAATGCTTTGCGGAGTGTATCTGAGCTCCATATTGGTGATGAGCAGCAGTCTGGCACTAATAAATTTGATATGGAAAAAGTACTCAAAGGTTTTGGAGCTCGTGATGCTTTTGTGGCCTCTAAGCTCACTGACCCAAACATACAAGTTGGTGTTGTACCCTCGAAATCTTTGGATTTGTGCCCTTCTGAGATCGCTGTTCCAGGAAAAAGAGCTCCTTTGGATCTCACCCTGAAGACTACTTTGCAATTTGTTTCATCATCTTCTGTAAAGTGGTGTCACAAGATAAGTACAAGTTTTGGTAGGAGCAGCATTGTAGGACCCATTGCCCAAAGTTATCATCATGGGTGTCAAAATTCAGGATGCTCAAGGCCTGAGAGAAACAAGGAATTCTTGTTCTCAAAGGCACTACAATCATGGGTATATCCACAATCCTTGTTGCCTGCTTCCATCATATCTGCAATGGTATCATCAACTGTACGAGGAGAAAGTGATTTTCTCCTCAAAAGGCATCAGGACTGGGAAGATTCATTTCAGAATCTTTACTACATGCTCCGGAAGAATCTGTTGAATATTTTTTATGTTTATACGCCACAATTTGTTGCTCTCTTCATCGGTGGAAATTGTTTGGACAAGAAGCAGACCTGTAATGCGTACCTATCACAATCAACACGTGGGATACGATCATTGCTGCGAAGACATGGTGTTTGTTTTTCTATGCCTCTTTGCAACACTGAAGTGGAGCAGGTTACAGAGGATGACCTGATTGAACTTTCAGAAATCCAAAAGCGCAATCTAGGCCAGGCGCTCCACATTGACGCTATGTCTGAAGTCGACAACACCACACAATCGCTTCTTTCATTTGTGGGCAATAAGAGTGTTCATGGTTTATATGACTTCTTGTTGAACTACAAGTCATTCTTAAATTCTCTATCTGCCACAGATATCCCGGTGTTATATTCCCCGGTGCCGTTTCAAAATGGCTGCCTCCATATTCCAGAGGTGAAATGCAAGGAGATGAGGAAGGCAGATATAGGCCTGGTTTCAGGTGGGTTTGATGCAGGAGAGCCTGGATCTACTTTCGCTTCTTTAACGGGCAATATCTGCTATAGCATGGAAATAAAGGATCCCGTACTTCCTCCATGGGTTGTTTCTGGAATCTGCGCTGCAATGAGCTCTGATGCAAATAGCTTCGATTTAATGATGGCAACAGAGCCTTCGTCGATGGGCTTAAACGCTGCCTTGAGCTGCGTAAGCTCAAATTCCCAGTCCAAGGCACATTCCTCTGAAGGCTGTGAATCATTGGGCATCCCTGAGGCCACATTGGTTCCCTCCTTGCGATCTGCATCTTCTCTGCGGCGCCTCAGCTACAAGGATGGCGAGTACATCGCATACACAACGGTGTGAGCTACAACGCAACACCTCGAAGCCATAGCTGGGAAGCAAGACAAGTACTCCTATTCCAGTCAAGTGCAGCCACTTTTGATGTTCTACGACTACCAATGGGGGTTCTATCTGGTTGAGCTCCTCCCGTCAAGAAGCCTCAATGCCTCGTCCATGAGACAAGCAAGGCAGGCAGGCAGAGAAGCTGTTAGCTGCTGCTGGTTTTGTGGTTTTTTTTGCAAGGCAATGTGTCCAGTATCTGGAATCATCTAACTGTTTTTGGGTGAGCCTGTAGATTATCTACAGGACAATGAGCTGCTCTTGAATGGTGCAGTAATTTATGGGATTGTACAGTGTATTTGATGCCCTTGACAGTGCATCCTTCGATGACTGATGGGGGGGGGGGGGGGGTAGTGAGGAGGGGGAAGTGACTCTTTTATGGCGTTCTCTGCTGTCATCCTCTCTAGTCTGCAAGATAATTGCGCTTGATCT]

[+] EMBL AK073528             [CCAAGTTTTAGGAAAGTTGAGAAATGCAGTGAAAATGCTTTGCGGAGTGTATCTGAGCTCCATATTGGTGATGAGCAGCAGTCTGGCACTAATAAATTTGATATGGAAAAAGTACTCAAAGGTTTTGGAGCTCGTGATGCTTTTGTGGCCTCTAAGCTCACTGACCCAAACATACAAGTTGGTGTTGTACCCTCGAAATCTTTGGATTTGTGCCCTTCTGAGATCGCTGTTCCAGGAAAAAGAGCTCCTTTGGATCTCACCCTGAAGACTACTTTGCAATTTGTTTCATCATCTTCTGTAAAGTGGTGTCACAAGATAAGTACAAGTTTTGGTAGGAGCAGCATTGTAGGACCCATTGCCCAAAGTTATCATCATGGGTGTCAAAATTCAGGATGCTCAAGGCCTGAGAGAAACAAGGAATTCTTGTTCTCAAAGGCACTACAATCATGGGTATATCCACAATCCTTGTTGCCTGCTTCCATCATATCTGCAATGGTATCATCAACTGTACGAGGAGAAAGTGATTTTCTCCTCAAAAGGCATCAGGACTGGGAAGATTCATTTCAGAATCTTTACTACATGCTCCGGAAGAATCTGTTGAATATTTTTTATGTTTATACGCCACAATTTGTTGCTCTCTTCATCGGTGGAAATTGTTTGGACAAGAAGCAGACCTGTAATGCGTACCTATCACAATCAACACGTGGGATACGATCATTGCTGCGAAGACATGGTGTTTGTTTTTCTATGCCTCTTTGCAACACTGAAGTGGAGCAGGTTACAGAGGATGACCTGATTGAACTTTCAGAAATCCAAAAGCGCAATCTAGGCCAGGCGCTCCACATTGACGCTATGTCTGAAGTCGACAACACCACACAATCGCTTCTTTCATTTGTGGGCAATAAGAGTGTTCATGGTTTATATGACTTCTTGTTGAACTACAAGTCATTCTTAAATTCTCTATCTGCCACAGATATCCCGGTGTTATATTCCCCGGTGCCGTTTCAAAATGGCTGCCTCCATATTCCAGAGGTGAAATGCAAGGAGATGAGGAAGGCAGATATAGGCCTGGTTTCAGGTGGGTTTGATGCAGGAGAGCCTGGATCTACTTTCGCTTCTTTAACGGGCAATATCTGCTATAGCATGGAAATAAAGGATCCCGTACTTCCTCCATGGGTTGTTTCTGGAATCTGCGCTGCAATGAGCTCTGATGCAAATAGCTTCGATTTAATGATGGCAACAGAGCCTTCGTCGATGGGCTTAAACGCTGCCTTGAGCTGCGTAAGCTCAAATTCCCAGTCCAAGGCACATTCCTCTGAAGGCTGTGAATCATTGGGCATCCCTGAGGCCACATTGGTTCCCTCCTTGCGATCTGCATCTTCTCTGCGGCGCCTCAGCTACAAGGATGGCGAGTACATCGCATACACAACGGTGTGAGCTACAACGCAACACCTCGAAGCCATAGCTGGGAAGCAAGACAAGTACTCCTATTCCAGTCAAGTGCAGCCACTTTTGATGTTCTACGACTACCAATGGGGGTTCTATCTGGTTGAGCTCCTCCCGTCAAGAAGCCTCAATGCCTCGTCCATGAGACAAGCAAGGCAGGCAGGCAGAGAAGCTGTTAGCTGCTGCTGGTTTTGTGGTTTTTTTTGCAAGGCAATGTGTCCAGTATCTGGAATCATCTAACTGTTTTTGGGTGAGCCTGTAGATTATCTACAGGACAATGAGCTGCTCTTGAATGGTGCAGTAATTTATGGGATTGTACAGTGTATTTGATGCCCTTGACAGTGCATCCTTCGATGACTGATGGGGGGGGGGGGGGGGTAGTGAGGAGGGGGAAGTGACTCTTTTATGGCGTTCTCTGCTGTCATCCTCTCTAGTCTGCAAGATAATTGCGCTTGATCT]
[+] EMBL C74194               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCCCTGAGGCCACATTGGTTCCCTCCTTGCGATCTGCATCTTCTCTGCGGCGCCTCAGCTACAAGGATGGCGAGTACATCGCATACACAACGGTGTGAGCTACAACGCAACACCTCGAAGCCATAGCTGGGAAGCAAGACAAGTACTCCTATTCCAGTNAAGTGCAGCCACTTTTGATGTTCTACGACTACCAATGGGGGTTCTATCTGGTTGAGCTCCTCCCGTCAAGAAGCCTCAATGCCTCGTCCATGAGACAAGCNAGGCAGGCAGGCAGAGAAGCTG TAACTGCTGCTGG TTTGTGG TTTTTTTGCAAGG AATGTGTCCAGTATCTGGAATCATCT ACTG TTTTNGGTGA CCTGTAGATTATCTACAGn                                                                                                                                                                                         ]


>consensus_1086#0 CCAAGTTTTAGGAAAGTTGAGAAATGCAGTGAAAATGCTTTGCGGAGTGTATCTGAGCTC CATATTGGTGATGAGCAGCAGTCTGGCACTAATAAATTTGATATGGAAAAAGTACTCAAA GGTTTTGGAGCTCGTGATGCTTTTGTGGCCTCTAAGCTCACTGACCCAAACATACAAGTT GGTGTTGTACCCTCGAAATCTTTGGATTTGTGCCCTTCTGAGATCGCTGTTCCAGGAAAA AGAGCTCCTTTGGATCTCACCCTGAAGACTACTTTGCAATTTGTTTCATCATCTTCTGTA AAGTGGTGTCACAAGATAAGTACAAGTTTTGGTAGGAGCAGCATTGTAGGACCCATTGCC CAAAGTTATCATCATGGGTGTCAAAATTCAGGATGCTCAAGGCCTGAGAGAAACAAGGAA TTCTTGTTCTCAAAGGCACTACAATCATGGGTATATCCACAATCCTTGTTGCCTGCTTCC ATCATATCTGCAATGGTATCATCAACTGTACGAGGAGAAAGTGATTTTCTCCTCAAAAGG CATCAGGACTGGGAAGATTCATTTCAGAATCTTTACTACATGCTCCGGAAGAATCTGTTG AATATTTTTTATGTTTATACGCCACAATTTGTTGCTCTCTTCATCGGTGGAAATTGTTTG GACAAGAAGCAGACCTGTAATGCGTACCTATCACAATCAACACGTGGGATACGATCATTG CTGCGAAGACATGGTGTTTGTTTTTCTATGCCTCTTTGCAACACTGAAGTGGAGCAGGTT ACAGAGGATGACCTGATTGAACTTTCAGAAATCCAAAAGCGCAATCTAGGCCAGGCGCTC CACATTGACGCTATGTCTGAAGTCGACAACACCACACAATCGCTTCTTTCATTTGTGGGC AATAAGAGTGTTCATGGTTTATATGACTTCTTGTTGAACTACAAGTCATTCTTAAATTCT CTATCTGCCACAGATATCCCGGTGTTATATTCCCCGGTGCCGTTTCAAAATGGCTGCCTC CATATTCCAGAGGTGAAATGCAAGGAGATGAGGAAGGCAGATATAGGCCTGGTTTCAGGT GGGTTTGATGCAGGAGAGCCTGGATCTACTTTCGCTTCTTTAACGGGCAATATCTGCTAT AGCATGGAAATAAAGGATCCCGTACTTCCTCCATGGGTTGTTTCTGGAATCTGCGCTGCA ATGAGCTCTGATGCAAATAGCTTCGATTTAATGATGGCAACAGAGCCTTCGTCGATGGGC TTAAACGCTGCCTTGAGCTGCGTAAGCTCAAATTCCCAGTCCAAGGCACATTCCTCTGAA GGCTGTGAATCATTGGGCATCCCTGAGGCCACATTGGTTCCCTCCTTGCGATCTGCATCT TCTCTGCGGCGCCTCAGCTACAAGGATGGCGAGTACATCGCATACACAACGGTGTGAGCT ACAACGCAACACCTCGAAGCCATAGCTGGGAAGCAAGACAAGTACTCCTATTCCAGTCAA GTGCAGCCACTTTTGATGTTCTACGACTACCAATGGGGGTTCTATCTGGTTGAGCTCCTC CCGTCAAGAAGCCTCAATGCCTCGTCCATGAGACAAGCAAGGCAGGCAGGCAGAGAAGCT GTTAGCTGCTGCTGGTTTTGTGGTTTTTTTTGCAAGGCAATGTGTCCAGTATCTGGAATC ATCTAACTGTTTTTGGGTGAGCCTGTAGATTATCTACAGGACAATGAGCTGCTCTTGAAT GGTGCAGTAATTTATGGGATTGTACAGTGTATTTGATGCCCTTGACAGTGCATCCTTCGA TGACTGATGGGGGGGGGGGGGGGGTAGTGAGGAGGGGGAAGTGACTCTTTTATGGCGTTC TCTGCTGTCATCCTCTCTAGTCTGCAAGATAATTGCGCTTGATCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)