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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1000 fasta sequence
[TTCTTTTATTTTTTTGATAGAACAGAGCATCATCAAGAAGTGGCTGCATTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTCGTACAAAAGCACTGTCATGTGGCACCCCATGGTCAGGCCAGTCAGAATACAGAATGTGGAGAACATGGCGAACTGTAAGTGACTCATTCTGCTGTACCTCCAAACCACGCAATTCTAAGACACCATCGCATTTGAACTTTGTGATCTTAACACTGAATTTTCCATAATCCCTTTCTTCTCCTTCGTTCGTTGGAAGATACCTGTCACACTTGGCACCATCAAATTT]
[+] EMBL CB658923 [TTCTTTTATTTTTTTGATAGAACAGAGCATCATCAAGAAGCCGTTGCATTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAAAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAAAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATG ]
[+] EMBL CB658924 [ TGATAGAACAGAGCATCATCAAGAAGTGGCTGCCTTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTCGTACAAAAGCACTGTCATGTG ]
[+] EMBL CF311188 [ ttttttTCAAGAAGTGGCTGCATTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGGGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTG ]
[-] EMBL CA765401 [ GTCTTAAACCTTCNGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTNCCAACCAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAACCCTTGTATCATCATCATCAGCTTTGGATACAGACCCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAACTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGNCCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCNCCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCNCCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGNATGCTCTTTT ]
[-] EMBL AU173320 [ ttttTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGANAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCANAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGT ]
[-] EMBL CF196800 [ nnnnnnnnnTGTNNAGAAGTTAGAGAANGCNNNNTGCNGNAGCATGAATTTTTCAGNNNTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCNAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTCGTACAAAAGCACTGTCATGTGGCACCCCATGGTCAGGCCAGTCAGAATACAGAATGTGGAGAACATGGCGAACTGTAAGTGACTCA ]
[-] EMBL CF311187 [ CATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACNCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTCGTACAAAAGCACTGTCATGTGGCACCCCATGGTCAGGCCAGTCAGAATACAGAATGTGGAGAACATGGCGAACTGTAAGTGACTCATTCTGCTGTACCTCCAAACCACGCAATTCTAAGACACCATCGCATTTGAACTTTGTGATCTTAACACTGAATTTTCCATAATCCCTTTCTTCTCCTTCGTTCGTTGGAAGATACCTGTCACACTTGGCACCATCAAATTT]
consensusID : consensus_10861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[TTTTTTTTTTTTGGCTGATGCCATTCTGCTTGGCAACACCGGTTTCAACTCCTCAACCCCCAGAAACAGACAGTCTAGAGATAGAACAGAGCATCATCAAGAAGTGGCTGCATTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCAGCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAGGGCTGTTAGCTAGGCTTAGAGAATTAAGGGGCGTTGAAGGGCGACGATCTGTCAAAGATACCCAGGGTACTGATTGTTGCATAGAAATGATTGAGGGTTTGGATTTGAATGAAGGTGTTCGGTTTAGATACGCTGTGCTATGCGAACTGGGTTTGGGGTTTGGCGGGGCATCGCCGGGGTTGGAGCTACAGTGTCGACGCGTATGG]
[+] EMBL CA760814 [TTTTTTTTTTTTGGCTGATGCCATTCTGCTTGGCAACACCGGTTTCAACTCCTCAACCCCCAGAAACAGACAGTCTAGAGATAGAACAGAGCATCATCAAGAAGTGGCTGCATTTGCAGTAGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGGCAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCATCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCAGCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAGGGCTGTTAGCTAGGCTTAGAGAATTAAGGGGCGTTGAAGGGCGACGATCTGTCAAAGATACCCAGGGTACTGATTGTTGCATAGAAATGATTGAGGGTTTGGATTTGAATGAAGGTGTTCGGTTTAGATACGCTGTGCTATGCGAACTGGGTTTGGGGTTTGGCGGGGCATCGCCGGGGTTGGAGCTACAGTGTCGACGCGTATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10861#0 ------------------------------------------------------------
consensus_10861#1 TTTTTTTTTTTTGGCTGATGCCATTCTGCTTGGCAACACCGGTTTCAACTCCTCAACCCC 60
consensus_10861#0 ----TTCTTTTATTTTTTTGATAGAACAGAGCATCATCAAGAAGTGGCTGCATTTGCAGT 56
consensus_10861#1 CAGAAACAGACAGTCTAGAGATAGAACAGAGCATCATCAAGAAGTGGCTGCATTTGCAGT 120
* * * * *****************************************
consensus_10861#0 AGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGG 116
consensus_10861#1 AGCAACAGCCGTTTCAATCTTCTCCAGACATTTGACCTCACACACACAAACAAATGGGGG 180
************************************************************
consensus_10861#0 CAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCA 176
consensus_10861#1 CAGCGTCACTACTGCTTGAAAAGTGACAAAGCTGAGTCTTAAAACTTCCGAAAAATTTCA 240
************************************************************
consensus_10861#0 TCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGA 236
consensus_10861#1 TCATATGCATGATGCAGGAGAAGCTACCAAACAATCACAAAGTTAGGTGGGTGGGCAGGA 300
************************************************************
consensus_10861#0 GAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACC 296
consensus_10861#1 GAAGCGCCGCTGCAAATTTCCAAACCTTGTATCAGCATCATCAGCTTTGGATACAGAACC 360
********************************** *************************
consensus_10861#0 AGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCT 356
consensus_10861#1 AGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCT 420
************************************************************
consensus_10861#0 GCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTT 416
consensus_10861#1 GCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAGGGCTGTT 480
**************************************************** ******
consensus_10861#0 AGCTAGGCTTAAAGAATTGAGGGA-GTTGAAGGGCGACAATCTGTCAGAGATACCCAGGG 475
consensus_10861#1 AGCTAGGCTTAGAGAATTAAGGGGCGTTGAAGGGCGACGATCTGTCAAAGATACCCAGGG 540
*********** ****** **** ************* ******** ************
consensus_10861#0 CACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTC 535
consensus_10861#1 TACTGATTGTTGCATAGAAATGATTGAGGGTTT-GGATTTGAATGAAGGT-GTTCGGTTT 598
********** ************* ** **** * ****** * **** **** * *
consensus_10861#0 AGAGACAAT-TGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTC 594
consensus_10861#1 AGATACGCTGTGCTATGCG----AACTGGGTTTGGGGTTTGGC--GGGGCATCGCCGG-- 650
*** ** * *** ** **** * *** * * ** *** * **
consensus_10861#0 GCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTA 654
consensus_10861#1 GGTTGGAGCTACAGTGTC-GACGCGTATGG------------------------------ 679
* * *** *** * * * *** * * *
consensus_10861#0 AAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCAC 714
consensus_10861#1 ------------------------------------------------------------
consensus_10861#0 TGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTC 774
consensus_10861#1 ------------------------------------------------------------
consensus_10861#0 GTACAAAAGCACTGTCATGTGGCACCCCATGGTCAGGCCAGTCAGAATACAGAATGTGGA 834
consensus_10861#1 ------------------------------------------------------------
consensus_10861#0 GAACATGGCGAACTGTAAGTGACTCATTCTGCTGTACCTCCAAACCACGCAATTCTAAGA 894
consensus_10861#1 ------------------------------------------------------------
consensus_10861#0 CACCATCGCATTTGAACTTTGTGATCTTAACACTGAATTTTCCATAATCCCTTTCTTCTC 954
consensus_10861#1 ------------------------------------------------------------
consensus_10861#0 CTTCGTTCGTTGGAAGATACCTGTCACACTTGGCACCATCAAATTT 1000
consensus_10861#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||