These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 811 fasta sequence [CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGAAACCGG-AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG-CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG-AAGGAAT-CCAT-CGTCTCCCAGATGGC-TGAACTGAAGAAGAT-ACTGTACGGAAAGTT-CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT-AAGCCAAGTTTTCAGTTGCATCAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103619 [CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGGAACCGG AGATGCAGCAGGGGGACGTCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG AAGGAAT CCAT CGTCTCCCAGATGGC TGAACTGAAGAAGAT ACTGTACGGAAAGTT CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAATTGT ] [+] EMBL C73996 [ GGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGANACCGG AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTTGAGACAAGGCTTGAGCAGATGAAAGAGGATGCAGNTAAGAAGTTTGAGA GCTTGAGCAGGNGAAAGGATT CCAT CGTNTTCCAGATTGCTTNACCTTAAG AGGT ACTt ] [+] EMBL OS1562A [ TTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGNATCCAGCGGCGGCGCACCCCGAA GACACCGGNAGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGA ] [+] EMBL AU095020 [ AGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAA GAANCCGN AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGT GTGCGGTTCCAATTTGGAGAAGTGTTTGCCCACATN CCAAGGGATNTTTTGGAGAAAAGct ] [+] EMBL AU030037 [ TTGGAGAATTTTTTNCCCACATGCCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG AAGGAATCCCATCCGTCTCCCAGATGGC TGAACTGAAGAAGATNACTGTACGGAAAGTTCCAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAAaaaa ] [+] EMBL AU029299 [ AGGCTGGANCAGGAG AAGGAAT CCAT CGTCTCCCAGATGGC TGAACTGAAGAAGAT ACTGTNCGGAAAGTT CAAGGACNCCATCAACCTGGAAGAAGNTTAATATCGAGTAAGCTGCCNGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACNCGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU063662 [ TGTACGGAAAGTT CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCANTTTATAAAAATGCAGTATGGGGGAATTTGGACGNATTGGTTATGTTATTACTACATATAAAGCCAAGTTTTCAGTTGCATCAAATTGTgttaana ] consensusID : consensus_10862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAAAAAAAAAAAAAAAAAA] [+] EMBL C98317 [GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10862#0 CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGA 60 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 GATCGACGAATCCAGCGGCGGCGCACCCCGAAGGAAACCGGAGATGCAGCAGGGGGACGG 120 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 CACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAA 180 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 CAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCT 240 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 TGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGG 300 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 AGAAGTGTTTGCCCACATGCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGA 360 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 GGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAGAAGGAATCCATCGTCTCCCAGAT 420 consensus_10862#1 ------------------------------------------------------------ consensus_10862#0 GGCTGAACTGAAGAAGATACTGTACGGAAAGTTCAAGGACGCCATCAACCTGGAAGAAGA 480 consensus_10862#1 ---------------GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGA 45 ****** ************************ ************* consensus_10862#0 TTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGA 540 consensus_10862#1 TTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGA 105 ************************************************************ consensus_10862#0 GGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGA 600 consensus_10862#1 GGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGA 165 ************************************************************ consensus_10862#0 TGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATA 660 consensus_10862#1 TGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATA 225 ************************************************************ consensus_10862#0 CGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACG 720 consensus_10862#1 CGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACG 285 ************************************************************ consensus_10862#0 AATTGGTTATGTTATTACTACATATAAGCCAAGTTTTCAGTTGCATCAAATTGTAAAAAA 780 consensus_10862#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 303 ** * * * consensus_10862#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 811 consensus_10862#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||