cluster # 10862

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Oryza sativa
cluster # 10862 cluster # 10862 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10862#0 length = 811 sequences # 7

consensus_10862#1 length = 303 sequences # 1

consensusID : consensus_10862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 811
fasta sequence

                              [CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGAAACCGG-AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG-CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG-AAGGAAT-CCAT-CGTCTCCCAGATGGC-TGAACTGAAGAAGAT-ACTGTACGGAAAGTT-CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT-AAGCCAAGTTTTCAGTTGCATCAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103619             [CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGGAACCGG AGATGCAGCAGGGGGACGTCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG AAGGAAT CCAT CGTCTCCCAGATGGC TGAACTGAAGAAGAT ACTGTACGGAAAGTT CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAATTGT                                     ]
[+] EMBL C73996               [              GGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAAGGANACCGG AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTTGAGACAAGGCTTGAGCAGATGAAAGAGGATGCAGNTAAGAAGTTTGAGA GCTTGAGCAGGNGAAAGGATT CCAT CGTNTTCCAGATTGCTTNACCTTAAG AGGT ACTt                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OS1562A              [                  TTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGNATCCAGCGGCGGCGCACCCCGAA GACACCGGNAGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATG CCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU095020             [                                 AGCAGCGGCGGCGGCGGCGGCGGCGGAGATCGACGAATCCAGCGGCGGCGCACCCCGAA GAANCCGN AGATGCAGCAGGGGGACGGCACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAACAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGT GTGCGGTTCCAATTTGGAGAAGTGTTTGCCCACATN CCAAGGGATNTTTTGGAGAAAAGct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU030037             [                                                                                                                                                                                                                                                                                                         TTGGAGAATTTTTTNCCCACATGCCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAG AAGGAATCCCATCCGTCTCCCAGATGGC TGAACTGAAGAAGATNACTGTACGGAAAGTTCCAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAAaaaa                                     ]
[+] EMBL AU029299             [                                                                                                                                                                                                                                                                                                                                                                                                AGGCTGGANCAGGAG AAGGAAT CCAT CGTCTCCCAGATGGC TGAACTGAAGAAGAT ACTGTNCGGAAAGTT CAAGGACNCCATCAACCTGGAAGAAGNTTAATATCGAGTAAGCTGCCNGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACNCGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAATTGGTTATGTTATTACTACATAT AAGCCAAGTTTTCAGTTGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU063662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTACGGAAAGTT CAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCANTTTATAAAAATGCAGTATGGGGGAATTTGGACGNATTGGTTATGTTATTACTACATATAAAGCCAAGTTTTCAGTTGCATCAAATTGTgttaana                              ]




>consensus_10862#0
CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGA
GATCGACGAATCCAGCGGCGGCGCACCCCGAAGGAAACCGGAGATGCAGCAGGGGGACGG
CACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAA
CAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCT
TGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGG
AGAAGTGTTTGCCCACATGCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGA
GGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAGAAGGAATCCATCGTCTCCCAGAT
GGCTGAACTGAAGAAGATACTGTACGGAAAGTTCAAGGACGCCATCAACCTGGAAGAAGA
TTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGA
GGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGA
TGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATA
CGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACG
AATTGGTTATGTTATTACTACATATAAGCCAAGTTTTCAGTTGCATCAAATTGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAAAAAAAAAAAAAAAAAA]

[+] EMBL C98317               [GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAAAAAAAAAAAAAAAAAA]




>consensus_10862#1
GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGATTAATATCGAGTAAG
CTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCT
AGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGATGCATCAACATGGTT
AATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATACGTGAATCATGAGTT
GCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACGAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10862#0      CTGCCAATTGCGAAGGCTTTTCCCCCGAAATCCAGCAGCGGCGGCGGCGGCGGCGGCGGA 60
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      GATCGACGAATCCAGCGGCGGCGCACCCCGAAGGAAACCGGAGATGCAGCAGGGGGACGG 120
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      CACGGAGGCGCAGGTGACGTGGGAGGACCAGCAGAACATCAACCGCTTTGGCCGCCTCAA 180
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      CAACCGCCTCCACGAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCT 240
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      TGATGATGCTGGGAATGAACTCATCCTGTCAGACGAAGACGTGGTGCGGTTCCAAATTGG 300
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      AGAAGTGTTTGCCCACATGCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGATGAAAGA 360
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      GGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAGAAGGAATCCATCGTCTCCCAGAT 420
consensus_10862#1      ------------------------------------------------------------
                                                                                   

consensus_10862#0      GGCTGAACTGAAGAAGATACTGTACGGAAAGTTCAAGGACGCCATCAACCTGGAAGAAGA 480
consensus_10862#1      ---------------GATACTNTACGGAAAGTTCAAGGACGCCATCNACCTGGAAGAAGA 45
                                      ****** ************************ *************

consensus_10862#0      TTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGA 540
consensus_10862#1      TTAATATCGAGTAAGCTGCCGGATATTGAATGATATGATGCTCTCTTAGTTGAGACTAGA 105
                       ************************************************************

consensus_10862#0      GGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGA 600
consensus_10862#1      GGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGTTTCTCGTGA 165
                       ************************************************************

consensus_10862#0      TGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATA 660
consensus_10862#1      TGCATCAACATGGTTAATTCTTATGCTGGATTAGATTAGCATGGTTTTGCCCAGCAGATA 225
                       ************************************************************

consensus_10862#0      CGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACG 720
consensus_10862#1      CGTGAATCATGAGTTGCATGGTTTCAATTTATAAAAATGCAGTATGGGGGAATTTGGACG 285
                       ************************************************************

consensus_10862#0      AATTGGTTATGTTATTACTACATATAAGCCAAGTTTTCAGTTGCATCAAATTGTAAAAAA 780
consensus_10862#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 303
                       **      *    *  *                                           

consensus_10862#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 811
consensus_10862#1      -------------------------------