These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1493 fasta sequence [CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCGAGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCTGCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCGGTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACCTACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAACGGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATCCCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTCGTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG-TACAGAACAAGGGATGCC-CGTCAGTGCCAC-TGTGCA-A-TGGAACGCTGAAGCTTGGTGAGACGAACGGCA-CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG-CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATGTTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT] [+] EMBL AK073032 [CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCGAGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCTGCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCGGTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACCTACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAACGGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATCCCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTCGTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG TACAGAACAAGGGATGCC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATGTTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT] [+] EMBL CF312331 [ GCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAG TACAGAACAAGGGATGCCNCGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAG ] [+] EMBL AU057312 [ CACCTACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAGACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCACCTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTGACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGACAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGATCACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGCTGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAGTTACAGAACAAGGGATGCC CGTC ] [-] EMBL CF312332 [ TGCC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCACCCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAGCCCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTAaaaaaaa ] [-] EMBL CA305767 [ CC CGTCAGTGCCAC TGTGCA A TGGAACGCTGAAGCTTGGTGAGACGAACGGCA CCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCA ] [+] EMBL BI813401 [ GTGCCCCGTGCGCACAGTGGAACGCTGAAGCTTGGTGAGACGAAC GCA CC GTTCCGGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACCAG CCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCCCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTcccaaaaaa ] consensusID : consensus_10865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 448 fasta sequence [ACAGTTCATCGCTCATCATACAANCCAGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAAAA] [+] EMBL AU057313 [ACAGTTCATCGCTCATCATACAANCCAGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTCGCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAAAA] [+] EMBL AT003770 [ CCTTGCAACTATTCAGGCACCAGCCTGCCAGAGAGGA GATCTGGGAGGTCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTCATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTT TTAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10865#0 CCTGCTCCAGTGTCAACACGACAGTCAAACAAACACCAAGCCTCTCATTCCCACCTCTCG 60 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 AGGAGAGCTTTCCCCACCATGGCGTCGCTCACCGCCGCCCTGGCCACGCCGGCGGCCGCT 120 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 GCCCTCCTCCTCCTCGTCCTCCTCGCCGCCCCCGCCTCCGCCGCCAACTTCACCTGCGCG 180 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 GTGGCTTCAGGCACCACCTGCAAGTCCGCCATCCTCTACACCTCCCCCAACGCCACCACC 240 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 TACGGCAACCTCGTCGCCCGCTTCAACACCACCACCCTCCCCGACCTCCTCGGCGCCAAC 300 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 GGCCTCCCCGACGGCACGCTTTCCTCCGCCCCCGTCGCCGCCAATTCCACCGTCAAAATC 360 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 CCCTTCCGCTGCCGCTGCAACGGCGACGTCGGCCAGTCGGACCGCCTCCCCATCTACGTC 420 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 GTGCAGCCGCAGGACGGGCTCGACGCCATCGCGCGCAACGTGTTCAACGCCTTCGTCACC 480 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 TACCAGGAGATCGCCGCCGCGAACAACATCCCCGACCCCAACAAGATAAATGTCAGCCAG 540 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 ACGCTGTGGATTCCGCTGCCCTGCAGCTGCGACAAGGAGGAAGGCTCTAACGTGATGCAC 600 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 CTCGCCTACAGCGTCGGCAAAGGGGAGAACACGTCGGCGATCGCTGCCAAGTACGGGGTG 660 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 ACGGAGTCCACGCTTCTCACCAGAAATAAGATCGACGACCCCACGAAATTGCAGATGGGA 720 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 CAGATTCTAGATGTCCCGCTCCCTGTGTGCCGTTCATCAATCAGCGATACCTCAGCTGAT 780 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 CACAATCTGATGCTCCTCCCGGATGGCACCTATGGATTCACCGCAGGAAACTGCATCCGC 840 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 TGCAGCTGCAGTTCAACTACCTACCAGCTAAACTGCACTGCAGTACAGAACAAGGGATGC 900 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 CCGTCAGTGCCACTGTGCAATGGAACGCTGAAGCTTGGTGAGACGAACGGCACCGGTTGC 960 consensus_10865#1 ------------------------------------------------------------ consensus_10865#0 GGATCAACAACGTGCGCCTACAGTGGTTACTCCAACAGTTCATCGCTCATCATACAAACC 1020 consensus_10865#1 ----------------------------------ACAGTTCATCGCTCATCATACAANCC 26 *********************** ** consensus_10865#0 AGCCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTC 1080 consensus_10865#1 AGCCTTGCAACTAATCAGACAACANCCTGCCAGAGAGGAGGATCTGGGAGGTCGCAGTTC 86 ************************ *********************************** consensus_10865#0 GCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGT 1140 consensus_10865#1 GCTAGGNCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGT 146 ****** ***************************************************** consensus_10865#0 TTCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACG 1200 consensus_10865#1 TNCCTTTGATGTTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACG 206 * ********************************************************** consensus_10865#0 ATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGT 1260 consensus_10865#1 ATCTATGATTGTTGTATACGATATATGATTGTTGTCGTAACTTAGATTTTGATGACTGGT 266 ************************************************************ consensus_10865#0 TTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTA 1320 consensus_10865#1 TTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTGGCACTTGTA 326 ************************************************************ consensus_10865#0 CGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTC 1380 consensus_10865#1 CGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAAAAGGAATATTC 386 ************************************************************ consensus_10865#0 ATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAGGCGTTACATG 1440 consensus_10865#1 ATTAGATAGGATTATTCGAAATAAAAAGATCCCACATGTTTTTGTTATAAAAAAAAAAAA 446 ************************************************* * * consensus_10865#0 TTCTGGATGGATATATAATGTACCATGCGGAAGTATGAATGGACTTCCCACCT 1493 consensus_10865#1 AA--------------------------------------------------- 448 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||