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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1411 fasta sequence
[AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG-CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG]
[+] EMBL AK059170 [AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAAT ]
[+] EMBL AK103637 [ ACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG]
[+] EMBL AK101305 [ ACGTCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCG ]
[+] EMBL AU183891 [ ACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCTCGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGGCAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCACCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCCGTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGA ]
[+] EMBL AU078327 [ TCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGTTCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCCACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCG CGACGCCGCCGTCGCCGCCGCCGTACGTGCCG CGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATC GGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGA CTGGACGCCGCGCTCTG CTCTG ACCACCATCCGCGCGCGCCTTCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCG CTTCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACT ]
[+] EMBL AU078328 [ GTTCCACCCTACATCCCGCCGCCNACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCCGCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCCGCCGGCGACGAAGACGTGCCCGATCGACGCGCTGAAG CTGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACAAACGAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAAaaaaaaa ]
[+] EMBL BI807031 [ GACGAAGACGTGCCCGATCGACGCGCTGAAGTCTGAACGCGTGCGTGGAC T CT GGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTGGTGCAGGGCGTGGCGGACCTGGAC CCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAAC AACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCCTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGC ATTTGTGTTGTATTAATGTACNACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAAaaaaaaaaa ]
consensusID : consensus_10885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[GATTCGGACGCGCTGAACTGACGCGTGCGTGGACGTGCTGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCCTGGTTCAGGGCGTGCGGACCTGGACCCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCGCCTCCTCTACATCACATCTACCTCCCCGTCGCGCTCGACTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTTACGGCGCCTGAACTGAACACAACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA]
[+] EMBL BI800864 [GATTCGGACGCGCTGAACTGACGCGTGCGTGGACGTGCTGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCCTGGTTCAGGGCGTGCGGACCTGGACCCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCGCCTCCTCTACATCACATCTACCTCCCCGTCGCGCTCGACTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTTACGGCGCCTGAACTGAACACAACCAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTTGTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCACGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10885#0 AGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAA 60
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCAT 120
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 AGCGACGTTGCTTTTTGGTCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTC 180
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 ACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTG 240
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 AGACAGGTTAGTTTTACCCTACTGATGACCGTGCCGCGATAGTAATTCAACCTAGTACGA 300
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAA 360
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGTGCAACG 420
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 TCGAGCCGCGCCACCAGCATCTATGGCTGCGGCGCTCGCCACCGTCGTGTCTTTCCTGCT 480
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 CGTCGTCCTCGTCTCCGTCGCCCACGGCTGGAACAAAGACTGCCCGCCTCCCGGTAGCGG 540
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 CAGCAGCGGCGGCGGCCACCACGGCAAGCCGCCCGGTAGCGGCAGCGGCGGCGGCGGTCA 600
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 CCACGGCAAGCCGCCCGAGCACCACCACCACCACAAACCTCCCCCGTCTCCCCGGTGCCC 660
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GTCGTGCCACCCGCCCTACACGCCGCCGACGCCACGGCCGCCGCCAACTCCGCCGTACGT 720
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 TCCATCTCCACCACCATACGTGCCACCCTACATCCCGCCGCCGACGCCGCCATACGTTCC 780
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 ACCCTACATCCCGCCGCCGACGCCGCCGTACGTCCCGCCGCCGACGCCGCCGTCTCCTCC 840
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GCCATACGTGCCGCCGCCGACGCCGCCGTCGCCGCCGCCGTACGTGCCGCCGCCGAGCCC 900
consensus_10885#1 ------------------------------------------------------------
consensus_10885#0 GCCGGCGACGAAGACGTGCCCGATC--GACGCGCTGAAGCTGAACGCGTGCGTGGACGTG 958
consensus_10885#1 ---------------------GATTCGGACGCGCTGAA-CTGA-CGCGTGCGTGGACGTG 37
*** *********** **** ****************
consensus_10885#0 CTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTG 1018
consensus_10885#1 CTGGGGGG-CTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCC-CTG 95
******** *********************************************** ***
consensus_10885#0 GTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCT-GCACCACCATCCGCGCGCG 1077
consensus_10885#1 GTTCAGGGCGTG-CGGACCTGGAC-CCGCGCTCTGCCTCTTGCACCACCATCCGCGCGCG 153
** ********* *********** *************** *******************
consensus_10885#0 CCTCCTCAACATCAACATCTACCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAA 1137
consensus_10885#1 CCTCCTCTACATCA-CATCTACCTCCCCGTCGCGCTCGA-CTGCTCATCACCTGCGGCAA 211
******* ****** ************************ ********************
consensus_10885#0 GCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCGCCTGAACTGAACA-AACGA 1196
consensus_10885#1 GCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCT-TACGGCGCCTGAACTGAACACAACCA 270
********************************* ******************** *** *
consensus_10885#0 AGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCC 1256
consensus_10885#1 AGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCC 330
************************************************************
consensus_10885#0 TCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCGATTT 1316
consensus_10885#1 TCGCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCAATTT 390
******************************************************* ****
consensus_10885#0 GTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCA 1376
consensus_10885#1 GTGTTGTATTAATGTACTACCTCCGGTTTTAATCCAAGTGTAGTTTAATTAATTAATCCA 450
************************************************************
consensus_10885#0 CGAGAAAAGATCCGACTTATGATCAAGTCTCTGTG 1411
consensus_10885#1 CGAGAAAAGATCCGACTTATGATCCAAAAAAAAAA 485
************************ *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||