cluster # 10886

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Oryza sativa
cluster # 10886 cluster # 10886 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10886#0 length = 998 sequences # 7

consensus_10886#1 length = 420 sequences # 1

consensusID : consensus_10886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 998
fasta sequence

                              [CCCTTGCTGTAACGATACGCTACGTAACGGCATGA-TTTTGTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA-ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC-GAACGAAGGCATCAGGGTATGCCTTC-TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT-AT-CCGGGTG-ATCTGT-GA-TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT]

[+] EMBL CF299693             [CCCTTGCTGTAACGATACGCTACGTAACGGCATGA TTTTGTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCTGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF299174             [                     ACGTAACGGCATGACATTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACA AAAAAAAAAAAGAAAAAGAAAGAACGTGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BM420261             [                                                 TTTTTTTTTTGCAAAANCAAAATTTCA TGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCTCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCAGACAACGGCAGGTCGGAGAGCGAGAGAACAATTACGTGCAGCTCAACACGGACACAC  AAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTCACGTTGTCAAAGCCGATGATGCAGAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTAAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAG TTCCACATGGTCCAGTACCTACCGTCATAGTAATCCCGGGGGAATCGGTGGATTTCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB656743             [                                                                   AAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAGACCGATAGTTGTAGTAGTACTCTTGCA ACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGC                                                                                                                                                               ]
[-] EMBL CB685632             [                                                                                                                                                                                                                                                                                         AAGAAAGTACATGCACGAAGGATCGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTACCGTTGTCAAAGCCAATGATGC GAACGAAGGCATCAGGGTATGCCTTC TTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACTCCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCTCTTTGAAGGAGAAATTGAATCGTATCGTTTCTGATACCTGCATGCATATGATCCTTCCGCCATTGTTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCTCCGGGAGGCCCGCAGTGGTCTTGAGCCCCTGGAAGGGAGCCACGGAGGT GCCGTCGAAGCCATCACCGAGGGAGCCATTGATAGCTTGCTAGGAGCTATAGAAGAACT                          ]
[-] EMBL CF297908             [                                                                                                                                                                                                                                                                                                                                                                                                                GATGC GAACGAAGGCATCAGGGTATG CTTCTTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTGCGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT]
[-] EMBL CF335546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCAGTACCTACCGTCATAGT AT CCGGGTG ATCTGT GA TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT]




>consensus_10886#0
CCCTTGCTGTAACGATACGCTACGTAACGGCATGATTTTGTTTTTTTTTTTTTTTTTTGC
AAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGT
ACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATA
GACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAGAGAACAATT
ACGTGCAGCTTAACACGGACACACAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGG
AACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAG
CTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGG
TATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAAC
ATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGTATCCGGGTGATCTGTGATTC
TCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGC
AGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGAGTC
TCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATAATA
GAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAAACG
TATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAAGCT
CGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAAGGG
AGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGGAGC
TATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT

consensusID : consensus_10886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAATTACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGAAGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTC]

[+] EMBL CF301641             [ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAATTACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGAAGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTC]




>consensus_10886#1
ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAACCAAAATTTCATTGGCGA
CGGATTCAAATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATTGCCGGAGATCC
TGCATTCACGTGCCCTGTCTCACCGTCACCGAACGATAAACCGATAGTTGTAGTAGTACT
CTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAATTACGTGCAGCTTAACACGGGCCC
CCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGAAGGAACGAAAGCGCTTATTTGCC
GCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATGAAGCTGATTAACTGCACCTGCCT
AACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10886#0      CCCTTGCTGTAACGATACGCTACGTAACGGCATGATTTTGTTTTTTTTTTTTTTTTTT-G 59
consensus_10886#1      -----------------------ACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 37
                                                *  *   *  **** ****************** *

consensus_10886#0      CAAAACCAAAATTTCATTGTCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAG 119
consensus_10886#1      CAAAACCAAAATTTCATTGGCGACGGATTCAAATATGCTCTAGGCATCATATTACATGAG 97
                       ******************* *********** ****************************

consensus_10886#0      TACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGAT 179
consensus_10886#1      TACGTGTGTATTGCCGGAGATCCTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGAT 157
                       *********** ********** *************************************

consensus_10886#0      AGACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAGAGAACAAT 239
consensus_10886#1      AAACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAAAAAACAAT 217
                       * ************************************************* * ******

consensus_10886#0      TACGTGCAGCTTAACACGGACACACAAAAAAAAAAA--GAAAAAGAAAGAACATGCACGA 297
consensus_10886#1      TACGTGCAGCTTAACACGGGCCCCCAAAAAAAAAAAAAGAAAAAGAAAGAACCTGCCCGA 277
                       ******************* * * ************  ************** *** ***

consensus_10886#0      AGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATG 357
consensus_10886#1      AGGAACGAAAGCGCTTATTTGCCGCCTGACTCCTCGCAACCCGGGGGCTTATACGCGATG 337
                       ***************** ************************** ***************

consensus_10886#0      AAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCA 417
consensus_10886#1      AAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCA 397
                       ************************************************************

consensus_10886#0      GGGTATGCCTTCTTTGCCTCCTCGAGCTCCTTGAGCACTTGGGTGGCATCGGTGCATCCA 477
consensus_10886#1      GGGTATGCCTTCTTTGCCTCCTC------------------------------------- 420
                       ***********************                                     

consensus_10886#0      AACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGTATCCGGGTGATCTGTGA 537
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      TTCTCACGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGG 597
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      AGCAGGTACTCGATCTGCTTCAAAAGGTCCTCCACTGTCAATGGCGGCAAGTACGACAGA 657
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      GTCTCGAACTTCTTAATGCCCTCAATCGGCCACACCTGATTGAATGAATTGATGCAGATA 717
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      ATAGAATCGGGCCAACATTTAATATATATGAACAACGAGCACTTTGAAGGAGAAATTGAA 777
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      ACGTATCGTTTCTGATACCTGCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCCAAA 837
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      GCTCGAGCTGCTGGAGCGGCGGTTCACCGGGAGGCCCGCAGTGGACTTGAGCCCCTGGAA 897
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      GGGAGCCACGGAGGTGGCCGACGAAGCCATCACCGAGGGAGCCATTGCTAGCTTGCTAGG 957
consensus_10886#1      ------------------------------------------------------------
                                                                                   

consensus_10886#0      AGCTATAGAAAAACTTAAGTTGCAGTGTGCTGCCTCCGGCT 998
consensus_10886#1      -----------------------------------------