These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1595 fasta sequence [AGAACACCAGCATTCGCCATGGCCTCCTCCCCCTGCGGCGGCTTCCTCGAGAAGGCCAAGCCCTACTTCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTGATCACCAAGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGGGCCTGTGATCGATCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCAACCTTCGCATGCGCCATGAGCAACATCCTCCCCGCCATGACCTTCGTGATGGCCGTAATCTTCAGGATGGAGAAGGTTGACCTGAAGAAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATGATGACGCTGTACAAGGGCCCGCTGATGCAGATGGGCGTGGATGAGCCACGTGCAGGCGCCGCACGGCCACGGCGCGGAGGCGCCCGCCGCCGCCCGCGNCGTCGACCCGTCGGGCAGGGAGTGGNTCCTCGGCTCTCTGTTCGTCATCATCGCCACCCTCGCCTGGGCCTCGCTCTTCATCCTGCAGGCGCACACCCTCAAGAAGTACTCGGCGCCGCTCTCCCTCACCACGCTCATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTCGCCATGGAGCACCGCCCCTCCGTCTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCTTACGCCGGCATCGTGACGTCGAGCATCGCGTACTACGTGCAGGGGCTGGTGATCCAGAAGACAGGGCCGGTGTTCGCATCGGCGTTCAGTCCGCTGATGATGATCATCGTGGCCGGCATGGGCTCCTTCATCCTCGCCGAGAAGATATACCTCGGCGGCGTCCTCGGCGCCGTCCTGATCGTGGTCGGGCTCTACTCCGTGCTCTGGGGCAAGCACAAGGAGACCCAGGAGCAGGACGCGGCCATGATGGAGCTTCCAGTGGCCTCTAAGGGAAACGACGCCGAGTTCACCGCCGCCACCGTTGTTGGAGACGACGACGACGCGGCGGACTGCAAGAAAGCAAATGGAGTGAAAAAGTCGTCATCCTCCAACGAGCAAGGAGCTAGTGCAGTTTGACGCAGCTGGCTGCAGCATGCAGGCACAATGCACAATGATTCCAAGTGTTTTGCTGCATCAGTCGATCGTGGTGGAGAGGTTTTGTCCAAATGCTAATTAACTGTCTTCTCATGTGAGGGCGTAC-GTGTGACGGAAACGTTTGTGTTACTGAC-GTTGCATGCATTATTACTTATTAGGGCCCGGTGATTATTGAGAACGGGTGGAGTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCCCTTCCTGTAACCTGGATTCCTTACTCCAGCTACCCCTGAATCATCAGTTCTCCTTCTGTTTTTGATCGGAAGTAATTAAGAGCGTGTTGTGTTTTGGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA757378 [AGAACACCAGCATTCGCCATGGCCTCCTCCCCCTGCGGCGGCTTCCTCGAGAAGGCCAAGCCCTACTTCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTGATCACCAAGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGGAAGGTGAGGCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGGGCCTGTGATCGATCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCAACCTTCGCATGCGCCATGAGCAACATCCTCCCCGCCATGACCTTCGTGATGGCCGTAATCTTCAGGATGGAGAAGGTTGACCTGAAGAAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATGATGACGCTGTACAAGGGCCCGCTGATGCAGATGGGCGTGGATGAGCCACGTGCAGGCGCCGCACGGCCACGGCGCGGAGGCGCCCGCCGCCGCCCGCGNCGTCGACCCGTCGGGCAGGGAGTGGNTCCTCGGCTCTCTGTTCGTCA ] [+] EMBL AK071286 [ GCCCAAGATGACGTGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGGGCCTGTGATCGATCAGAACTTCTACTACGCCGGCCTCAAGTTCACCGGGCCAACCTTCGCATGCGCCATGAGCAACATCCTCCCCGCCATGACCTTCGTGATGGCCGTAATCTTCAGGATGGAGAAGGTTGACCTGAAGAAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATGATGACGCTGTACAAGGGCCCGCTGATGCAGAT GGCGTGGACGAGCCACGTGCAGGCGCCGCACGGCCACGGCGCGGAGGCGCCCGCCGCCGCCGCCGCCATCGACCCGTCGGGCAGGGAGTGGTTCCTCGGCTCGCTGTTCGTCATCATCGCCACCCTCGCCTGGGCCTCGCTCTTCATCCTGCAGGCGCACACCCTCAAGAAGTACTCGGCGCCGCTCTCCCTCACCACGCTCATCTGCTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTCGCCATGGAGCACCGCCCCTCCGTCTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCTTACGCCGGCATCGTGACGTCGAGCATCGCGTACTACGTGCAGGGGCTGGTGATCCAGAAGACAGGGCCGGTGTTCGCATCGGCGTTCAGTCCGCTGATGATGATCATCGTGGCCGGCATGGGCTCCTTCATCCTCGCCGAGAAGATATACCTCGGCGGCGTCCTCGGCGCCGTCCTGATCGTGGTCGGGCTCTACTCCGTGCTCTGGGGCAAGCACAAGGAGACCCAGGAGCAGGACGCGGCCATGATGGAGCTTCCAGTGGCCTCTAAGGGAAACGACGCCGAGTTCACCGCCGCCACCGTTGTTGGAGACGACGACGACGCGGCGGACTGCAAGAAAGCAAATGGAGTGAAAAAGTCGTCATCCTCCAACGAGCAAGGAGCTAGTGCAGTTTGACGCAGCTGGCTGCAGCATGCAGGCACAATGCACAATGATTCCAAGTGTTTTGCTGCATCAGTCGATCGTGGTGGAGAGGTTTTGTCCAAATGCTAATTAACTGTCTTCTCATGTGAGGGCGTAC GTGTGACGGAAACGTTTGTGTTACTGAC GTTGCATGCATTATTACTTATTAGGGCCCGGTGATTATTGAGAACGGGTGGAGTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCCCTTCCTGTAACCTGGATTCCTTACTCCAGCTACCCCTGAATCATCAGTTCTCCTTCTGT ] [-] EMBL AU176458 [ AGCATGCAGGCACAATGCACAATGATTCCAAGTGTTTTGCTGCATCAGTCGATCGTGGTGGAGAGGTTTTGTCCAAATGCTAATTAACTGTCTTCTCATGTGAGGGCGTACNGTGTGACGGAAACGTTTGTGTTACTGACTGTTGCATGCATTATTACTTATTAGGGCCCGGTGATTATTG ] [+] EMBL CA755337 [ GAACGGGTGGAGTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCCCTTCCTGTAACCTGGATTCCTTACTCCAGCTACCCCTGAATCATCAGTTCTCCTTCTGTTTTTGATCGGAAGTAATTAAGAGCGTGTTGTGTTTTGGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1533 fasta sequence [TAATTAGGAAGCTAAGATCGCCATGGCTTCCTGCTGCGGCGGTTTCATGGAGAAGGCCAAGCCCTACTTCGCCATGATCTGCCTTCAGTTCGGCTACGCCGGCATGAACGTGATCACCAAGGTCTCACTCAACCATGGCATGAGCCACTACGTACTCGTCGTGTACCGCCACGCCTTCGCCACCATCTCCATTGCTCCCTTCGCGCTGATCCTCGAGAGGAAGGTGAGGCCCAAGATGACGTGGTCGATCTTCTTCCAAATCTTCATCCTGGCGCTACTCGGACCGGTGATCGACCAGAACTTCTACTACGCCGGCCTGAAGTTCACCGGCCCGACCTTCGCCTGCGCCATGAGCAACATCCTGCCGGCCATGACCTTCGTCATGGCTGTCATCTTCAGGATGGAGAAGCTGGAGCTGAAGAAGGTGAGGTGCCAGGCCAAGATCGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGCTGATGACGCTGTACAAGGGCCCGCTCATGGAGATGGCGTGGAGCCGGCACGCCGGCACCGGCGTGGCGGAGGCCCCCGCCGCCGCCGCCGCCGCCATCTCCGGCAGGGACTGGTTCCTCGGCTCGATGTTCGTCATCGTCGCGACGCTCGCGTGGGCGTCCCTCTTCATCCTCCAGACGCACACCATCAAGCAGTACTCGGCGCAGCTGTCGCTCACCACCCTCATCTGCCTCGTCGGCACGCTCCAGGCCGTCGTCGTCACCTTCGCCATGGAGCGGCGCCGCCCCTCCGTCTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCCTACGCCGGCATCGTGACGTCGAGCATCGCGTACTACGTGCAGGGCTTGGTGATCCAGAGGACGGGGCCGGTGTTCGCGTCGGCGTTCAGCCCGCTGATGATGATCATCGTCGCCGTCATGGGCTCCTTCATCCTCTCCGAGCAGATCTACCTCGGCGGCGTCGTCGGCGCCGCGCTCATCGTCGTCGGCCTCTACTCCGTGCTCTGGGGCAAGCACAAGGAGACCCAGGAGAAGCAGGCTGACACCAAGCTATCACTGCCCACTTCCAAAGGCGCCGCCGCCGCTGCGGAGGCGGAGGAGATCACCGGCGCCGGAGAAGACGACGGCGACGGCGACGATGACGCGGAGCGCAGCAAGAACCACCGCTCGAGTGGTGGCGTGAGGTCATCATCGGACTCCAATGGACATGGAGCTAGTGCGGTTTGATGGACACCTAACTCCCCAATAATTTGGTTGCGGCCGTCGACGCGTCGACGCGACGGCGACCGTCGCCATCGCCATGCGTGCGTCGACGTCGATCTCTCCGCTTTAAGATATCCGAACTGTTCGTCTACGGCGCGTGCGCTACGACGACGATGGCACTAAGGGCTCGTTAAATTTGGAAATGGAGGTTTTTGTTTGGTAGGAAATTTTTGATGAACTTTTACTGTGTTAATTTCCCTGCAAAATGTAAGCGTTTGTCACCTCGTCAGATGTTCAGAATGGTGGCATGCATATCTCTG] [+] EMBL AK110589 [TAATTAGGAAGCTAAGATCGCCATGGCTTCCTGCTGCGGCGGTTTCATGGAGAAGGCCAAGCCCTACTTCGCCATGATCTGCCTTCAGTTCGGCTACGCCGGCATGAACGTGATCACCAAGGTCTCACTCAACCATGGCATGAGCCACTACGTACTCGTCGTGTACCGCCACGCCTTCGCCACCATCTCCATTGCTCCCTTCGCGCTGATCCTCGAGAGGAAGGTGAGGCCCAAGATGACGTGGTCGATCTTCTTCCAAATCTTCATCCTGGCGCTACTCGGACCGGTGATCGACCAGAACTTCTACTACGCCGGCCTGAAGTTCACCGGCCCGACCTTCGCCTGCGCCATGAGCAACATCCTGCCGGCCATGACCTTCGTCATGGCTGTCATCTTCAGGATGGAGAAGCTGGAGCTGAAGAAGGTGAGGTGCCAGGCCAAGATCGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGCTGATGACGCTGTACAAGGGCCCGCTCATGGAGATGGCGTGGAGCCGGCACGCCGGCACCGGCGTGGCGGAGGCCCCCGCCGCCGCCGCCGCCGCCATCTCCGGCAGGGACTGGTTCCTCGGCTCGATGTTCGTCATCGTCGCGACGCTCGCGTGGGCGTCCCTCTTCATCCTCCAGACGCACACCATCAAGCAGTACTCGGCGCAGCTGTCGCTCACCACCCTCATCTGCCTCGTCGGCACGCTCCAGGCCGTCGTCGTCACCTTCGCCATGGAGCGGCGCCGCCCCTCCGTCTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCCTACGCCGGCATCGTGACGTCGAGCATCGCGTACTACGTGCAGGGCTTGGTGATCCAGAGGACGGGGCCGGTGTTCGCGTCGGCGTTCAGCCCGCTGATGATGATCATCGTCGCCGTCATGGGCTCCTTCATCCTCTCCGAGCAGATCTACCTCGGCGGCGTCGTCGGCGCCGCGCTCATCGTCGTCGGCCTCTACTCCGTGCTCTGGGGCAAGCACAAGGAGACCCAGGAGAAGCAGGCTGACACCAAGCTATCACTGCCCACTTCCAAAGGCGCCGCCGCCGCTGCGGAGGCGGAGGAGATCACCGGCGCCGGAGAAGACGACGGCGACGGCGACGATGACGCGGAGCGCAGCAAGAACCACCGCTCGAGTGGTGGCGTGAGGTCATCATCGGACTCCAATGGACATGGAGCTAGTGCGGTTTGATGGACACCTAACTCCCCAATAATTTGGTTGCGGCCGTCGACGCGTCGACGCGACGGCGACCGTCGCCATCGCCATGCGTGCGTCGACGTCGATCTCTCCGCTTTAAGATATCCGAACTGTTCGTCTACGGCGCGTGCGCTACGACGACGATGGCACTAAGGGCTCGTTAAATTTGGAAATGGAGGTTTTTGTTTGGTAGGAAATTTTTGATGAACTTTTACTGTGTTAATTTCCCTGCAAAATGTAAGCGTTTGTCACCTCGTCAGATGTTCAGAATGGTGGCATGCATATCTCTG] consensusID : consensus_10889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1532 fasta sequence [GGGGGCCGGCGAGGTGGTGCAGGGGCTGAAGCCGGTGGCGGCGATGGTGGTGGTGCAGGTGGTGTTCGCCGGAGTGAACATATTCTACAAGCTGGCGGTGGTGTGCGACGGCATGGACATGCGCGTCCTCGTCGCCTACCGCTACCTCTTCGCCTCCGCCGTCCTCGCCCCGCTCGCCTACTTCGTCGAGAGGAAGAACAGAACAAAGATGACGTGGAGAGTGCTGATGCTGTCGTTCGTCTGCGGACTCTCCGGGGGGTCGCTGGCGCAGAACCTGTACATCTCGGGGATGAAGCTGACGTCGGCCACCTTCGCCACCGCCATGACCAACCTCATCCCGGCCGTCACCTTCGTCCTCGCCGTCCTCTGCCGCTACGAGCGCCTCGCCATCCGCACCGTCGCCGGCCAGGCCAAGGTCGCCGGCACGCTGCTCGGGGTCGGCGGCGCCATGCTGCTCACCTTGTACAAGGGCGCCGAGCTCAACCCCTGGCACACCCACCTCGACCTCGTCGCCGCCCTGGAGGCGCGCCACCCCGCCGCCGCCGCCGCCACCGGGAATAACGACCGCGTGATCATGGGGTCGATGCTGGTGGTGGGCAGCTGCGTGTTCTACGCGGTGTGGCTGATCCTGCAGGCGAAGCTGAGCCGCGAGTACCCGTTCCACTACACCAGCACGGCGCTGATGTGCGTGATGAGCGGCGCGCAGTCGGCGGCGTTCGCGCTGTTGGTGGACAGGGAGCCCGCGCGGTGGCGGCTGGGGCTGGACATCCGGCTGCTGTCGGTGGTCTACTCCGGCGTGCTGGCCTCCGGCGTGATGCTGGTGGTGCTGTCGTGGTGCGTGAAGCGGCGCGGACCGCTGTTCGCGTCGGTGTTCAACCCGCTGATGCTGGTGGTGGTGGCCGTGCTGGGGTCCCTCCTGCTCGACGAGAAGATGCACGTCGGCACCCTGCTCGGCGCCGCCCTCATCGTCGTCGGCCTCTACGCCGTGCTCTGGGGCAAGGGACGCGAGACCGCCCTCGAGGCCGCCAAGGTCGGCGACGACAACGATAACCACCACATCCACGTCGTCGTCGTCGTGCCGCCGGAACAAGCGCAGCCGCAGCCGCACCAACAAGCGGAGGCTGATGCTGATGCCACGACGACGGCATGCGAACAACCATCGGATTCGGACCGGGCGAATATTGCATCCTCTTTACGACACAGCCATAGATACTTCCATCGTTCTTGCGGGTTTTAATTAATTAATTACTCTAGCTAGCTCAGGCTCAGCTAGCTGCTAATTAATTAACTCGCACGTACGTACGGCCTGCTTAATCCATGATCTCTGTTCGAGGGTAACTAATTAATTAATTAATCAGCGCGAGTACGTAGAAACCAATTAACCAATCAACAAGAAACAAACAAACGAGAGCGGTCGCGATCAACAAGCTATCGATCGACCGTGCGTACGTAGGATATGCATGTATGGTAGGTAGGAGAGGAGATTAAATATATTGTTGCTCTATCTCTGATCATTAATATATACGTACGTA] [+] EMBL AK107360 [GGGGGCCGGCGAGGTGGTGCAGGGGCTGAAGCCGGTGGCGGCGATGGTGGTGGTGCAGGTGGTGTTCGCCGGAGTGAACATATTCTACAAGCTGGCGGTGGTGTGCGACGGCATGGACATGCGCGTCCTCGTCGCCTACCGCTACCTCTTCGCCTCCGCCGTCCTCGCCCCGCTCGCCTACTTCGTCGAGAGGAAGAACAGAACAAAGATGACGTGGAGAGTGCTGATGCTGTCGTTCGTCTGCGGACTCTCCGGGGGGTCGCTGGCGCAGAACCTGTACATCTCGGGGATGAAGCTGACGTCGGCCACCTTCGCCACCGCCATGACCAACCTCATCCCGGCCGTCACCTTCGTCCTCGCCGTCCTCTGCCGCTACGAGCGCCTCGCCATCCGCACCGTCGCCGGCCAGGCCAAGGTCGCCGGCACGCTGCTCGGGGTCGGCGGCGCCATGCTGCTCACCTTGTACAAGGGCGCCGAGCTCAACCCCTGGCACACCCACCTCGACCTCGTCGCCGCCCTGGAGGCGCGCCACCCCGCCGCCGCCGCCGCCACCGGGAATAACGACCGCGTGATCATGGGGTCGATGCTGGTGGTGGGCAGCTGCGTGTTCTACGCGGTGTGGCTGATCCTGCAGGCGAAGCTGAGCCGCGAGTACCCGTTCCACTACACCAGCACGGCGCTGATGTGCGTGATGAGCGGCGCGCAGTCGGCGGCGTTCGCGCTGTTGGTGGACAGGGAGCCCGCGCGGTGGCGGCTGGGGCTGGACATCCGGCTGCTGTCGGTGGTCTACTCCGGCGTGCTGGCCTCCGGCGTGATGCTGGTGGTGCTGTCGTGGTGCGTGAAGCGGCGCGGACCGCTGTTCGCGTCGGTGTTCAACCCGCTGATGCTGGTGGTGGTGGCCGTGCTGGGGTCCCTCCTGCTCGACGAGAAGATGCACGTCGGCACCCTGCTCGGCGCCGCCCTCATCGTCGTCGGCCTCTACGCCGTGCTCTGGGGCAAGGGACGCGAGACCGCCCTCGAGGCCGCCAAGGTCGGCGACGACAACGATAACCACCACATCCACGTCGTCGTCGTCGTGCCGCCGGAACAAGCGCAGCCGCAGCCGCACCAACAAGCGGAGGCTGATGCTGATGCCACGACGACGGCATGCGAACAACCATCGGATTCGGACCGGGCGAATATTGCATCCTCTTTACGACACAGCCATAGATACTTCCATCGTTCTTGCGGGTTTTAATTAATTAATTACTCTAGCTAGCTCAGGCTCAGCTAGCTGCTAATTAATTAACTCGCACGTACGTACGGCCTGCTTAATCCATGATCTCTGTTCGAGGGTAACTAATTAATTAATTAATCAGCGCGAGTACGTAGAAACCAATTAACCAATCAACAAGAAACAAACAAACGAGAGCGGTCGCGATCAACAAGCTATCGATCGACCGTGCGTACGTAGGATATGCATGTATGGTAGGTAGGAGAGGAGATTAAATATATTGTTGCTCTATCTCTGATCATTAATATATACGTACGTA] consensusID : consensus_10889#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [GCGAACGCGCCACTGCTTAGCTTACTCCCGCCTCACTATCTGTCTTGGCGCGTCGTGTACACGATCGAGCACCAGACAATGGCAGGTGGCGCAGCAGCAGCAGCAGCAGCAGAGGCAGGCCACCGGTGAGTCGCTGATGCAGAAGTGCAAGCCGTACGTGGCGATGGTCTCGCTGCAGTTCGGGTACGCCGGCATGAACGTGATCACCAAGGTGTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACCCTCTCCATCGCGCCCTTCGCGCTCGTCCTCGAGCGCAAGGTCCGCCCTCGCATGTCCTTCTGGGTCTTCCTCCAGATCTTCGTCCTCGCCCTCCTCGGGCCGGTGATCGATCAGAATTTCTACTACGCCGGGCTCAAGTTCACCTNGCCGA] [+] EMBL AU172629 [GCGAACGCGCCACTGCTTAGCTTACTCCCGCCTCACTATCTGTCTTGGCGCGTCGTGTACACGATCGAGCACCAGACAATGGCAGGTGGCGCAGCAGCAGCAGCAGCAGCAGAGGCAGGCCACCGGTGAGTCGCTGATGCAGAAGTGCAAGCCGTACGTGGCGATGGTCTCGCTGCAGTTCGGGTACGCCGGCATGAACGTGATCACCAAGGTGTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTGTACCGACACGCCTTCGCCACCCTCTCCATCGCGCCCTTCGCGCTCGTCCTCGAGCGCAAGGTCCGCCCTCGCATGTCCTTCTGGGTCTTCCTCCAGATCTTCGTCCTCGCCCTCCTCGGGCCGGTGATCGATCAGAATTTCTACTACGCCGGGCTCAAGTTCACCTNGCCGA] consensusID : consensus_10889#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [CGTTGCGTTGTGAACGAGCGCTTTTTTTGTCCCAAGTGCTAATTACACCTGTCTTCTCACTGTGAGGGCGTACCGTGTGACCGGAAACCGCTTTGCTGTTACCTGACCGCTTGCCACTGCACTTATTACTTATTAGGGCCCGGTGATTATTGAGAACGCGGCTGGAGCTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCCCTTCCTGTAACCTGGATTCCTTACTCCAGCTACCCCTGTATCATCAGTTCTCCTTCTGTTTTTGATCGGAAGTAATTAAGAGCGCTGTTGTGTTCTTGGCCTTCATAAAAAAAAAA] [+] EMBL BM420858 [CGTTGCGTTGTGAACGAGCGCTTTTTTTGTCCCAAGTGCTAATTACACCTGTCTTCTCACTGTGAGGGCGTACCGTGTGACCGGAAACCGCTTTGCTGTTACCTGACCGCTTGCCACTGCACTTATTACTTATTAGGGCCCGGTGATTATTGAGAACGCGGCTGGAGCTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCCCTTCCTGTAACCTGGATTCCTTACTCCAGCTACCCCTGTATCATCAGTTCTCCTTCTGTTTTTGATCGGAAGTAATTAAGAGCGCTGTTGTGTTCTTGGCCTTCATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 AGAACACCAGCATTCGCCATGGCCTCCTCCCCCTGCGGCGGCTTCCTCGAGAAGGCCAAG 60 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 CCCTACTTCGCCATGATCTGCCTGCAGTTCGGCTACGCCGGCATGAACGTGATCACCAAG 120 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTCGCC 180 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 ACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGGAAGGTGAGGCCCAAGATGACG 240 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 TGGTCGGTGTTCCTCCAGATCTTCGTCCTGGCACTGCTCGGGCCTGTGATCGATCAGAAC 300 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 TTCTACTACGCCGGCCTCAAGTTCACCGGGCCAACCTTCGCATGCGCCATGAGCAACATC 360 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 CTCCCCGCCATGACCTTCGTGATGGCCGTAATCTTCAGGATGGAGAAGGTTGACCTGAAG 420 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 AAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATG 480 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 ATGACGCTGTACAAGGGCCCGCTGATGCAGATGGGCGTGGATGAGCCACGTGCAGGCGCC 540 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GCACGGCCACGGCGCGGAGGCGCCCGCCGCCGCCCGCGNCGTCGACCCGTCGGGCAGGGA 600 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GTGGNTCCTCGGCTCTCTGTTCGTCATCATCGCCACCCTCGCCTGGGCCTCGCTCTTCAT 660 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 CCTGCAGGCGCACACCCTCAAGAAGTACTCGGCGCCGCTCTCCCTCACCACGCTCATCTG 720 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 CTTCGTCGGCACCCTCCAGGCCATCGTCGTCACCTTCGCCATGGAGCACCGCCCCTCCGT 780 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 CTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCTTACGCCGGCATCGTGACGTC 840 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GAGCATCGCGTACTACGTGCAGGGGCTGGTGATCCAGAAGACAGGGCCGGTGTTCGCATC 900 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GGCGTTCAGTCCGCTGATGATGATCATCGTGGCCGGCATGGGCTCCTTCATCCTCGCCGA 960 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GAAGATATACCTCGGCGGCGTCCTCGGCGCCGTCCTGATCGTGGTCGGGCTCTACTCCGT 1020 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GCTCTGGGGCAAGCACAAGGAGACCCAGGAGCAGGACGCGGCCATGATGGAGCTTCCAGT 1080 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ------------------------------------------------------------ consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ------------------------------------------------------------ consensus_10889#0 GGCCTCTAAGGGAAACGACGCCGAGTTCACCGCCGCCACCGTTGTTGGAGACGACGACGA 1140 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 -------------------------------GGGGGCCGGCGAGGTGGTGCAGGGGCTGA 29 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 -TAATTAGGAAGCTAAGATCGCCATGGCTTCCTGCTGCGGCGGTTTCATGGAGAAGGCCA 59 consensus_10889#0 CGCGGCGGACTGCAAGAAAGCAAATGGAGTGAAAAAGTCGTCATCCTCCAACGAGCAAGG 1200 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 AGCCGGTGGCGGCGATGGTGGTGGTGCAGGTGGTGTTCGCCGGAGTGAACATATTCTACA 89 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 AGCCCTACTTCGCCATGATCTGCCTTCAGTTCGGCTACGCCGGCATGAACGTGATCACCA 119 consensus_10889#0 AGCTAGTGCAGTTTGACGCAGCTGGCTGCAGCATGCAGGCACAATGCACAATGATTCCAA 1260 consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 AGCTGGCGGTGGTGTGCGACGGCATGGACATGCGCGTCCTCGTCGCCTACCGCTACCTCT 149 consensus_10889#3 -------------------------GCGAACGCGCCACTGCTTAGCTTACTCCCGCCTCA 35 consensus_10889#1 AGGTCTCACTCA---ACCATGGCATGAGCCACTACGTACTCGTCGTGTACCGCCACGCCT 176 consensus_10889#0 GTGTTTTGCTGCATCAGTCGATCGTGGTGGAGAGGTTTTGT----CCAAATGCTAATTA- 1315 consensus_10889#4 --------------CGTTGCGTTGTGAACGAGCGCTTTTTTTGTCCCAAGTGCTAATTA- 45 * * * consensus_10889#2 TCGCCTCCGCCGTCCTCGCCCCGCTCGCCTACTTCGTCGAGAGGAAGAACAGAACAAAGA 209 consensus_10889#3 CTATCT-----GTCTTGGCGCG--TCGTGTACACGATCGAGCACCAGACAATGGCA--GG 86 consensus_10889#1 TCGCCACCATCTCCATTGCTCCCTTCGCGCTGATCCTCGAGAGGAAGGTGAGGCCCAAGA 236 consensus_10889#0 -A--CT-----GTCTTCTCA-TGTGAGGGCGTAC-GTGTGAC-GGAAACG--TTTG-TGT 1361 consensus_10889#4 -CACCT-----GTCTTCTCACTGTGAGGGCGTACCGTGTGACCGGAAACCGCTTTGCTGT 99 * * * * * * * * consensus_10889#2 TGACGTGGAGAGTGCTGATGCTGTCGTTCGTCTGCGGACTCTCCGGGGGGTCGCTGGCGC 269 consensus_10889#3 TGGCGCAGCAGCAGCAGCAGCAGCAGAG-----GCAGGC-CACCGGTGAGTCGCTGATGC 140 consensus_10889#1 TGACGTGGTCGATCTTCTTCCAAATCTTCATCCTGGCGCTACTCGGACCGGTGATCGACC 296 consensus_10889#0 TAC-TGACG--TTGCA--TGCA-TTATT-------ACTTATTAGGGCCCGGTGATTATTG 1408 consensus_10889#4 TACCTGACCGCTTGCCACTGCACTTATT-------ACTTATTAGGGCCCGGTGATTATTG 152 * * ** * * * consensus_10889#2 AGAACCTGTACATCTCGGGGATGAAGCTGACGTCGGCCACCTTCGCCACCGCCATGACCA 329 consensus_10889#3 AGAA---GTGCAAGCCGTACGTGGCGATGGTCTCGCTGCAGTTCGGGTACGCCGGCATGA 197 consensus_10889#1 AGAACTTCTACTACGCCGGCCTGAAGTTCACCGGCCCGACCTTCGCCTGCGCCATGAGCA 356 consensus_10889#0 AGAACGGG--TGGAG-TGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCC------- 1458 consensus_10889#4 AGAACGCGGCTGGAGCTGGAATAATTTTGTTCTATGTGCTTTTCGTTTTGTCC------- 205 **** * * **** ** consensus_10889#2 ACCTCATCCCGGCCGTCACCTTCGTCCTCGCCGTCCTCTGCCGCTACGAGCGCCTCGCCA 389 consensus_10889#3 ACGTGATCACCAAGGTGTCCCTCAACCACGGCATGA---GCCACTACGTGCTCGTCGTGT 254 consensus_10889#1 ACATCCTGCCGGCCATGACCTTCGTCATGGCTGTCATCTTCAGGATGGAGAAGCTGG--A 414 consensus_10889#0 -CTTCCTGTAACCTGGATTCCTTACTCCAGCTACC-----CCTGAATCATCAGTTCTCCT 1512 consensus_10889#4 -CTTCCTGTAACCTGGATTCCTTACTCCAGCTACC-----CCTGTATCATCAGTTCTCCT 259 * * * * * * * * consensus_10889#2 TCCG---CACCGTCGCCGGCCAGGCCAAGGTCGCCGGCACGCTGCTCGGGGTCGGCGGCG 446 consensus_10889#3 ACCGACACGCCTTCGCCACCCTCTCCATCGCGCCCTTCGCGCTCGTCCTCGAGCGCAAGG 314 consensus_10889#1 GCTGA-AGAAGGTGAGGTGCCAGGCCAAGATCGCCGGGACGCTGGTGACGGTGGCCGGCG 473 consensus_10889#0 TCTGT-TTTTGATCGGAAGTAA--TTAAGAGCG-TGTTGTGTT-TTGGCCTTCCNAAAAA 1567 consensus_10889#4 TCTGT-TTTTGATCGGAAGTAA--TTAAGAGCGCTGTTGTGTTCTTGGCCTTCATAAAAA 316 * * * * * * * consensus_10889#2 CCATGCTGCTCACCTTGTACAAGGGCGCCGAGCTCAACCCCTGGCACACCCACCTCGACC 506 consensus_10889#3 TCCGCCCTCGCATGTCCTTCTGGGTCTTCCTCCAGATCTTCGTCCTCGCCCTCCTCGGGC 374 consensus_10889#1 CGATGCTGATGACGCTGTACAAGGGCCCGCTCATGGAGATGGCGTGGAGCCGGCACG--- 530 consensus_10889#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 1595 consensus_10889#4 AAAAA------------------------------------------------------- 321 consensus_10889#2 TCGTCGCCGCCCTGGAGGCGCGCCACCCCGCCGCCGCCGCCGCCACCGGGAATAACGACC 566 consensus_10889#3 CGGTGATCGATCAGAATTTCTACTACGCCGGGCTCAAGTTCACCTNGCCGA--------- 425 consensus_10889#1 CCGGCACCGGCGTGGCGGAGGCCCCCGCCGCCGCCGCCGCCGCCATCTCCGGCAGGGACT 590 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 GCGTGATCATGGGGTCGATGCTGGTGGTGGGCAGCTGCGTGTTCTACGCGGTGTGGCTGA 626 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 G---GTTCCTCGGCTCGATGTTCGTCATCGTCGCGACGCTCGCGTGGGCGTCCCTCTTCA 647 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 TCCTGCAGGCGAAGCTGAGCCGCGAGTACCCGTTCCACTACACCAGCACGGCGCTGATGT 686 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 TCCTCCAGACGCACACCATCAAGCAGTACTCGGCGCAGCTGTCGCTCACCACCCTCATCT 707 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 GCGTGATGAGCG-GCGCGCAGTCGGCGGCGTTCGCGCTGTTGGTGGACAGGGAGCCCGCG 745 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 GCCTCGTCGGCACGCTCCAGGCCGTCGTCGTCACCTTCGCCATGGAGCGGCGCCGCCCCT 767 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 CGGTGGCGGC--TGGGGCTGGACATCCGGCTGCTGTCGGTGGTCTACTCCGGCGTGCTGG 803 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CCGTCTGGGCCATCGGCTTCGACATGAACCTCCTCGCCGCCGCCTACGCCGGCATCGTGA 827 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 CCTCCGGCGTGATGCTGGTGGTGCTGTCGTGGTGCGTGAAGCGGCGCGGACCGCTGTTCG 863 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CGTCGAGCATCGCGTACTACGTGCAGGGCTTGGTGATCCAGAGGACGGGGCCGGTGTTCG 887 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 CGTCGGTGTTCAACCCGCTGATGCTGGTGGTGGTGGCCGTGCTGGGGTCCCTCCTGCTCG 923 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CGTCGGCGTTCAGCCCGCTGATGATGATCATCGTCGCCGTCATGGGCTCCTTCATCCTCT 947 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ACGAGAAGATGCACGTCGGCACCCTGCTCGGCGCCGCCCTCATCGTCGTCGGCCTCTACG 983 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CCGAGCAGATCTACCTCGGCGGCGTCGTCGGCGCCGCGCTCATCGTCGTCGGCCTCTACT 1007 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 CCGTGCTCTGGGGCAAGGGACGCGAGACCGCCCTCGAGGCCGCCAAGGTCGGCGACGACA 1043 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CCGTGCTCTGGGGCAAGCACAAGGAGACC-CAGGAGAAGCAGGCTGACACCAAGCTATCA 1066 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ACGATAACCACCACATCCACGTCGTCGTCGTCGTGCCGCCGGAACAAGCGCAGCCGCAGC 1103 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CTGCCCACTTCCAAAG--GCGCCGCCGCCGCTGCGGAGGCGGAGGAGAT--CACCGGCGC 1122 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 CGCACCAACAAGCGGAGGCTGATGCTGATGCCACGACGACGGCATGCGAACAACCATCGG 1163 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CGGAGAAGACGACGGCGAC-GGCGACGATGACGCGGAG-CGCAGCAAGAACCACCGCTCG 1180 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 ATTCGGACCGGGCGAATATTG-CATCCTCTTTACGACACAGCCATAGATACTTCCATCGT 1222 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 AGTGGTGGCGTGAGGTCATCATCGGACTCCAATGGACATGGAGCTAGTGCGGTTTGATGG 1240 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 TCTTGCGGGTTTTAATTAATTAATTACTCTAGCTAGCTCAGGCTCAGCTAGCTGCTAATT 1282 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ACACCTAACTCCCCAATAATT--TGGTTGCGGCCGTCGACGCGTCGACGCGACGGCGACC 1298 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 AATTAACTCGCACGTACGTACGGCCTGCTTAATCCATGATCTCTGTTCGAGGGTAACTAA 1342 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 GTCGCCATCGC-CATGCGTGCGTCGACGTCGATC-----TCTCCGCTTTAAGATATCCGA 1352 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 TTAATTAATTAATCAGCGCGAGTACGTAGAAACCAATTAACCAATCAACAAGAAACAAAC 1402 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 ACTGTTCGTCTA-CGGCGCGTGCGCTACGACGACGATGGCACTAAGGGCTCGTTAAATTT 1411 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 AAACGAGAGCGGTCGCGATCAACAAGCTATCGATCGACCGTGCGTACGTAGGATATGCAT 1462 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 GGAAATGGAGGTTTTTGTTTGGTAGGAAATT--TTTGATGAACTTTTACTGTGTTAATTT 1469 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 GTATGGTAGGTAGGAGAGGAGATTAAATATATTGTTGCTCTATCTCTGATCATTAATATA 1522 consensus_10889#3 ------------------------------------------------------------ consensus_10889#1 CCCTGCAAAATGTAAGCGTTTGTCACCTCGTCAGATGTTCAGAATGGTGGCATGCATATC 1529 consensus_10889#0 ------------------------------------------------------------ consensus_10889#4 ------------------------------------------------------------ consensus_10889#2 TACGTACGTA 1532 consensus_10889#3 ---------- consensus_10889#1 TCTG------ 1533 consensus_10889#0 ---------- consensus_10889#4 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||