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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1002 fasta sequence
[TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG-CCCA-A-GGGGTGGGC-CATCGCGGACTTCATGGAGAAG-CTGGA-GGGGCTGATGGCGCGCGGGCGGTACGGGTCC-GGGGAGC-TGCTGGGCA-CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC-GGAGCTC-TTCCGCGTGC-TCC-GGCTGGTGGAGATGGACGTCGC-GATGGTCAAGGCCGC-CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC-GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC-TC-GC-TGTGACGACGGAC-GCA-CCGCGTGGTGCCCAAC-TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA-ACACTGAA-ACCATGTATA-CGAGAAATGGATGGGATAGCCAACTACGTGCACTTAATATGCTGCATAAAAAAAAAA]
[+] EMBL AK070436 [TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG CCCA A GGGGTGGGC CATCGCGGACTTCATGGAGAAG CTGGA GGGGCTGATGGCGCGCGGGCGGTACGGGTCC GGGGAGC TGCTGGGCA CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCACTT ]
[+] EMBL AK104204 [ ACTCGCTCTTCCGACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTCCTAAACCCCACATCCCCGCCGCTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCGCCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATCTCCCCCGACCGCCGGCGCCGGACGGCGCTGACGCAGGGGGAGCCGCCGAACTACGAGATCGGGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAG CCCA A GGGGTGGGC CATCGCGGACTTCATGGAGAAG CTGGA GGGGCTGATGGCGCGCGGGCGGTACGGGTCC GGGGAGC TGCTGGGCA CAGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACG ]
[+] EMBL BM419490 [ GGTGGAAGCGCACCAAGAAGCTGCCGCTGGAGAAGCCCCA A GGGGTGGCCACATCGCGGACTTCATGGAGAAG CTGGA GGGCTGATGGCGCGCAGGCGGTACGGGTCC GGGGAGC TGCTGGGCACCGGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCACCCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCAaaaaa ]
[+] EMBL BM422114 [ tagtaagtc CCCATANGGGGT GGC CATCGCGGACTTCATGGAGAAGTCTGGATGGGGCTGATGGCGCGTCGGCGGTACGGGTCCAGGGGAGCTTGCTGGGCA CGGTGGCCGGCGTGGTGACGGAGCGCGCGCGGGAGGAGGCCGAGATCCTGGTGTCGGAGGGCGGCGTGGAGGAGCGCGTCGCGACAGGAGCTCGTTCCGCGTGCGTCCAGGCTGGTGGAGATGGACGTCGCAGATGGTCAAGGCCACACGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGCAGCGCTGCCGCCAGGCCATCCTCGTCGCGCTCATCAGCATGTGACGACGGACAGCACCCGCGTGGTGCCCAACATGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAATACACTGAATACCATGTATACCGAGAAAnatanttaa ]
[+] EMBL BE228320 [ cgnGGCGGCGTGGAGGAGCGCGTCGCGAC GGAGCTC TTCCGCGTGC TCC GGCTGGTGGAGATGGACGTCGC GATGGTCAAGGCCGC CGTCNAGGANGAGACCGTCAAGGNGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATANCCACTATACACNGTTGCAANTGGTCATCAGGTTTTTCGTGTATGTNTACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCTTGTNTN CGAGAAATGGATGG ]
[+] EMBL AT003724 [ AGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGC GCGCTGCCGCCAGGCCATCCTCGTCGCGCTC TC GC TGTGACGACGGAC GCA CCGCGTGGTGCCCAAC TGTAATTCTGATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTTTCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAA ACACTGAA ACCATGTATA CGAGAAATGGATGGGATAGCCAACTACGTGCACTTATTATGCTGCATAAAAAAAAAA]
consensusID : consensus_10893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGCAGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCGCCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGACNCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCTGGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGGCNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAACCCGC]
[+] EMBL AA754586 [GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGCAGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCGCCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAGGAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCACCGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCGCGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGACNCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCTGGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGGCNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAACCCGC]
consensusID : consensus_10893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[NGGAGCTCCGTCAAGGAGCGCGTCCAGATGGCGCGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCGCNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATTTCTNGCANANCCCCTNTTCNCAGTTGCNGCTGGTCTTCAGNTNTTTCGTGTATGTATACCTGGGTTTCNGTAGCATTTNCAATCAAACGCNCNATCCATGNNTCCGNNGAATGNATGNNATANNCAANTACGNGCACTTCTTATGCTGCATAAAAAAAAAA]
[+] EMBL AT003763 [NGGAGCTCCGTCAAGGAGCGCGTCCAGATGGCGCGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCGCNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATTTCTNGCANANCCCCTNTTCNCAGTTGCNGCTGGTCTTCAGNTNTTTCGTGTATGTATACCTGGGTTTCNGTAGCATTTNCAATCAAACGCNCNATCCATGNNTCCGNNGAATGNATGNNATANNCAANTACGNGCACTTCTTATGCTGCATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10893#0 TCGCGCGGCCTTTTTTTAAGCTTATCTCTATCACTCGCTCTTCCGACCACGCCTCATCCG 60
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 CCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCCCCGAAACCCTTCCTCTCCGCCACTC 120
consensus_10893#1 -------------GGTTCAANGCGANGCCCTGCACCGNANACNTCNTTTNACTGGGACGC 47
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 CTAAACCCC-ACATCCCCGCCG---CTACCCCCAGTGCCATCGTGCGCTGCACCGCGGCG 176
consensus_10893#1 AGGGANGCTGACNTCATCANCGGGTTNCCCCCCAGTGCCATCGTGCGCTGCACCACNGCG 107
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 CCCAAGCCGGCCACCGGCTCTATCGCCAAGCCCAGCCAAGAAGAGGCCAACAACAACCAG 236
consensus_10893#1 CCCAGNCCGGNCACCGGCTCTATCGNCAAGCCCNGCCANNAAGAGGCCAACAACAACCAG 167
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 GAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCAC 296
consensus_10893#1 GAGCAAGAACCCAACGCCGCCGCCGCCGCCACTCCGGACGAGGCCGGCGCCAACCCGCAC 227
consensus_10893#2 --------------------------NGGAGCTCCGT-CAAGGAGCGCGTCCAGATGGCG 33
* ***** * *** *** * * *
consensus_10893#0 CGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCG 356
consensus_10893#1 CGCATCCCCGACGACGAGACCCCGCCGTCTGCGACGGCGACCACGTCGTTCGCCGTGGCG 287
consensus_10893#2 CGCGCGCGCTGCCGCCAGNCCATCCTCNTCGCGCTCTCTNTTGATCTGACGNTCGCTCCG 93
*** * * * * ** ** * *** * * ** **
consensus_10893#0 CGGCGCGTGCCGTCGGCCAT---CTCCCCCGACCGCCG----GCGCCGGACGGCGCTGAC 409
consensus_10893#1 CGGCGCGTGCCGTCGGCCATTCTCCCTCCTGTACTCTGTTCCGCNCCGGACGGCGCTGAC 347
consensus_10893#2 CNTGGTGCCCGTGNNGTAATTCTCATTCCTNCNCTTATT----TCTNGCANANCCCCTNT 149
* * * * * ** * ** * * * * *
consensus_10893#0 GCAGGGGGAGCCGCCGAA-CTACGAGA-TCGGGTGGAAGCGC-ACCAAGAAGCTGCCGCT 466
consensus_10893#1 NCANGGGGAGCCGCCGAAACTACNAAAATCGGGTGGAAGCGCCACCAAGAACCTGCCGCT 407
consensus_10893#2 TCNCAGTT-GCNGCTGGT-CTTCAGNTNTTTCGTGTATGTAT-ACCTGGG---TTTCNGT 203
* * ** ** * ** * * *** * * *** * * * *
consensus_10893#0 GGAGAAGCCCAAGGGGTGGGCCATC-GCGGACTTCATGGAGAAGCTGGAGGGGCTGATGG 525
consensus_10893#1 GGAAAACCCCAAGGGGTGGGCCATCCGCGGACTTCATGGAAAAACTNGAAGGGCTGATGG 467
consensus_10893#2 AGCATTTNCAATCAAACGCNCNATCCATGNN-TCCGNNGAATGNATGNNATANNCAANTA 262
* * * * * *** * * * ** * *
consensus_10893#0 CGCGCGGGCGGTACGGGTCCGGGGAGCTGCTGGGCACAGTGGCCGGCGTGGTGACGGAGC 585
consensus_10893#1 CNCCCGGGCGGTACNGGTCCNGGGAACTGCTGGGCACGGTGGCCGGCGTNGTNACGGAAC 527
consensus_10893#2 CGNGCACTTCTTATGCTGCATAAAAAAAAAA----------------------------- 293
* * ** * *
consensus_10893#0 GCGCGCGGGAGGAGGCCGAGATCCTGGTGGCGGAGGGCGGCGTGGAGGAGCGCGTCGCGA 645
consensus_10893#1 CCGC-------------------------------------------------------- 531
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 CGGAGCTCTTCCGCGTGCTCCGGCTGGTGGAGATGGACGTCGCGATGGTCAAGGCCGCCG 705
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 TCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGATGGCGCGCGCGCGCTGCCGCCAGGCCA 765
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 TCCTCGTCGCGCTCTCGCTGTGACGACGGACGCACCGCGTGGTGCCCAACTGTAATTCTG 825
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 ATTCCTTCACTGATTTCTCGCATAGCCACTATACACAGTTGCAACTGGTCATCAGGTTTT 885
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 TCGTGTATGTATACCTGAATTTTCAGTAGCATTTGCAATCAAACACTGAAACCATGTATA 945
consensus_10893#1 ------------------------------------------------------------
consensus_10893#2 ------------------------------------------------------------
consensus_10893#0 CGAGAAATGGATGGGATAGCCAACTACGTGCACTTAATATGCTGCATAAAAAAAAAA 1002
consensus_10893#1 ---------------------------------------------------------
consensus_10893#2 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||