These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1339 fasta sequence [CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG-AAAAAGATCCTCCATGGAGG-ACTTCTATGACACCAG-AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC-AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGAGGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGAC-GAGAGGCAGAGGATAGAGGATGC-TGGTGGTT-TTGTGATGTGGGC-TGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC-GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGTGCCATTCTAAAAAAAAA] [+] EMBL CF311009 [CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGC ] [+] EMBL CF309159 [ TCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCAC ] [+] EMBL AK071637 [ TGCTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCGAGCTCTCCTGG AAAAAGATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTCGTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGAGGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGAC GAGAGGCAGAGGATAGAGGATGC TGGTGGTT TTGTGATGTGGGC TGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGT ] [+] EMBL C93614 [ TCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGTCTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTNATGGGGCTCGCCGGAGAGGCCGCTGGCTCGCCTGGNAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGCTATGGTTATGCNAGCTCTCCTGG AAAAANATCCTCCATGGAGG ACTTCTATGACACCAG AATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTAATGGTCATGGTGGAGCTCGAGCAGCAGAATTCGTCANGCAAGAACCTCTTCACCAn ] [+] EMBL BP432943 [ CTCTCCTGGCAAAAAGATCCTCCATGGAGGCACTTCTATGACACCAGCAATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTNGGNGTCTTTGATGGTCATGGTGGAGCTCGAGCAGCANAATTCGTCAAGC AGAACCTCTTCACCAATTTAATCAAGCACCCAAAGTTATNCAGTGATACCAAGNCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTTCTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGNCGACTGCCTCC CTGCAATTCTCGNAGGCGACCGTC ] [+] EMBL AA754366 [ cgAGCCTGATCAGTCAGACGGAGAGGCAGAGGATAGAGGATGCTTGGTGGTTAATGTGATGTGGGCTTGGAACATGGCGCGTGGGTGGTGTTCTTGCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTVTCATAAGTGTCATCTGTRGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGGSTGTGTTTTTHDCCATCTCCTTC ] [-] EMBL CF309158 [ GTTGCTGATCCAGAGATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGTTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAGCAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACCTGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGATCAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTTGCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGTGTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTC GGGGGATGTGTTTTTTGCCATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGATGTAATGATATGTGTGCCATTCTAAAAAAAAA] consensusID : consensus_10895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGATCAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTTGCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGTGTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGCCATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATGTGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF311010 [TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGATCAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTTGCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGTGTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGCCATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGTTAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATGTGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10895#0 CGGATCGATCGCCATCCTCTTCTTCTTCCTCCTCCGTCGTTCGCGTGCATGCGTGAGGTG 60 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 CTCCTCCTCGGCTCGTTGGTGGTTCTCGCCTTGTTGTCGCTGTTCCCGTGCTGCTCCTGT 120 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 CTCTCGCAGGGAGCGGAGGAGGAGGAGGACGACGGCGAGGTGCGCTTGATGGGGCTCGCC 180 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 GGAGAGGCCGCTGGCTCGCCTGGCAGTGGCGGCGGGTTCAGTGCAAATGGTAAATTTAGC 240 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 TATGGTTATGCGAGCTCTCCTGGAAAAAGATCCTCCATGGAGGACTTCTATGACACCAGA 300 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 ATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGGTCATGGTGGA 360 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 GCTCGAGCAGCAGAATTCGTCAAGCAGAACCTCTTCACCAATTTAATCAAGCACCCAAAG 420 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 TTATTCAGTGATACCAAGTCTGCAATTGCTGAAACTTACACTAGCACGGACTCTGAACTT 480 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 CTGAAAGCTGAAACCAGCCACAATCGAGATGCAGGGTCGACTGCCTCCACTGCAATTCTC 540 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 GTAGGCGACCGTCTGCTCGTTGCAAATGTTGGAGATTCTAGGGCTGTCATTTGTAGAGGA 600 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 GGAGATGCTATAGCTGTGTCAAGAGACCACAAGCCTGATCAGTCAGACGAGAGGCAGAGG 660 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 ATAGAGGATGCTGGTGGTTTTGTGATGTGGGCTGGAACATGGCGCGTGGGTGGTGTTCTT 720 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 GCTGTCTCTCGAGCATTTGGTGACAAACTCCTGAAGCAATATGTGGTTGCTGATCCAGAG 780 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 ATCAAGGAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTC 840 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 TGGGACGTGGTGACCAACGAGGAAGCTGTGGCCATGGTGAAGCCAATTCTGGATTCAGAG 900 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 CAGGCTGCAAAGAAGCTCCTCCAGGAGGCCTCACAGAGGGGAAGCGCAGACAACATCACC 960 consensus_10895#1 ------------------------------------------------------------ consensus_10895#0 TGCCTCGTCGTCCGTTTCTTGGAGCAGGAGAATCACCTGCCAGAGAGACCGACGAATGAT 1020 consensus_10895#1 TGCCTTGTTGTCCGTTTTTTGGAGCAGGAGAATCCCCTGCCAGAAAGACCGACGAATGAT 60 ***** ** ******** **************** ********* *************** consensus_10895#0 CAAGCCTCCTAACATATCAATCATAGCTCTCTTCCATACACACCGTTCTTCATTGCTCTT 1080 consensus_10895#1 CAAGCCTCCTAACAAATCAATCATAGCTTTTTTCCATACACCCCGTTTTTCATTGCTTTT 120 ************** ************* * ********** ***** ********* ** consensus_10895#0 GCAAGTTTCTTCGACCTTATGGTTGTCTTGTGCCAAGCAGATGATGCATCTGTCATAAGT 1140 consensus_10895#1 GCAAGTTTTTTTGACCTTATGGTTGTTTTGTGCCAAACAAATGATGCATTTGTCATAAGT 180 ******** ** ************** ********* ** ********* ********** consensus_10895#0 GTCATCTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGC 1200 consensus_10895#1 GTCATTTGTGGATGCTGCTGTAGCTGAACATTGTAACTTGTCGGGGGATGTGTTTTTTGC 240 ***** ****************************************************** consensus_10895#0 CATCTCCTTCGTTGCTTGCGTTGCCCTGATCTTGTTTGAGGGCAACTTGCAATCGCAGGT 1260 consensus_10895#1 CATTTCCTTCGTTGCTTGGGTTGCCCTGATTTTGTTTGAGGGCAACTTGCGATCGCAGGT 300 *** ************** *********** ******************* ********* consensus_10895#0 TAAGTGTTGGTCCTCAATCATATGATGTAGCTTTCTACTAAACTTGA-TGTAATGATATG 1319 consensus_10895#1 TAAGTGTTGGTCCTCAATCATATGATGTAGCTTTTTAATAAACTTGAATGTAATGATATG 360 ********************************** ** ********* ************ consensus_10895#0 TGTGCCATTCTAAAAAAAAA-------------------------- 1339 consensus_10895#1 TGGGCCAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 406 ** **** * ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||