These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT-G-AAATCGAAGGGAGAGTCG-AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA-GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA-CTGGAGATGGTAAACCTG-TCAC-CAAGGGCGTCGACTCCATCG-CCGTCATGGAGGCTGCCAGCATGC-CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA-ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT-GTAGAATGCATTGGCCAGAGTCAGA-TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTGAATTTTGCTTTAAAAA] [+] EMBL AK072203 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTG ] [+] EMBL AK102297 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTG ] [+] EMBL AK060888 [GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAA ] [-] EMBL CB625393 [ CACTATAAACCAAGTGCAGAAAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGT G AAATCGAAGGGAGAGTCG AAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGA GCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCA CTGGAGATGGTAAACCTG TCAC CAAGGGCGTCGACTCCATCG CCGTCATGGAGGCTGCCAGCATGC CTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCA ATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGT GTAGAATGCATTGGCCAGAGTCAGA TGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCAATAAGA ] [+] EMBL BI813540 [ AGAGGCTCGCAAATCGAAGGGAGATTCGTAAATCCTATCAGCTC GGCACAGGCTCTCCCTGAAATGGACGCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCCATGGAGCTCAGAATGCAAGCATCTGGAGATGGTAAACCTGCTCACACAAGGGCGTCGACTCCATCGACCGTCATGGA GCTGCCAGCATGCACTCTCACCTACACCC ACTTACCATCATCTCCTCTTGGACCACATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCCTTGCAGAATTGCAGTTAAGCTCTTGGTCGTAGAATGCATTGGCCAGAGTCAGACTGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCAATAAGATTAGTAATATAAATCCTCCATGTTTGAATTTTGCTTTAAAAA] consensusID : consensus_10897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAATGCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCGTGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATCATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGAGCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGCAGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCATAAGATTAGTAATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA] [+] EMBL BI802865 [AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAATGCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCGTGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATCATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGAGCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGCAGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCATAAGATTAGTAATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA] consensusID : consensus_10897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 365 fasta sequence [GAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000300 [GAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB684727 [ TCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAGAATAGCATATGAGTATGTAACTAGTATGTGCAGCAGCGAGACACCATTGCAGAATTGCAGTTAAGCTCTTGGTGTAGAATGCATTGGCCAGAGTCAGATGCTAGAGGTTAATGCCTGCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTAATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10897#0 GGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATA 60 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 GCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGT 120 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 CACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGA 180 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 GTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCA 240 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 GTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATT 300 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 CTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGT 360 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 GCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCA 420 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 GGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGTG 480 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 AAATCGAAGGGAGAGTCGAAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGAGC 540 consensus_10897#2 ------------------------------------------------------------ consensus_10897#1 ------------------------------------------------------------ consensus_10897#0 ACTGGGGTTGGTCCAAGGATTGGA--TGTGTGAAGGACTACCC--AATGGAGCTCAGAAT 596 consensus_10897#2 -------------------------------------------------GAGCTCAGAAT 11 consensus_10897#1 ---------------AGGATTGGTATCGTCTGAAGGACTTACCCAAATGGAGCTCAGAAT 45 *********** consensus_10897#0 GCAAGCACTGG--AGATGGTAAACCTG-TCACC-AAGGGCGTC--GACTCCATC--GCCG 648 consensus_10897#2 GCAAGCACTGG--AGATGGTAAACCTG-TCACC-AAGGGCGTC--GACTCCATC--GCCG 63 consensus_10897#1 GCAAGCACCTGGTAGATGGTAAACCTGGTCACCCAAGGGCGTGCGGACTCCATGCAGCCG 105 ******** * ************** ***** ******** ******** **** consensus_10897#0 T-CATGG-AGGCTGCC--AGCATG-CCTCT---CACCTACACCC--AACTT---ACCATC 695 consensus_10897#2 T-CATGG-AGGCTGCC--AGCATG-CCTCT---CACCTACACCC--AACTT---ACCATC 110 consensus_10897#1 TGCATGGGAGGCTGGCCAAGCATGGCCTCTGCACACTGACAACCCAAACTTGACACAATC 165 * ***** ****** * ****** ***** *** *** ** ***** ** *** consensus_10897#0 ATCTCCTCT----TGGACCAATCC--AGACTTCACTGCCCCAGCCA--AGTTA-GAAT-A 745 consensus_10897#2 ATCTCCTCT----TGGACCAATCC--AGACTTCACTGCCCCAGCCA--AGTTA-GAAT-A 160 consensus_10897#1 ATGCTGCCTGCTGTGGACCAATGCCAAGACTTCACTGCCCCAAGCACAAGTTAAGAATGA 225 ** ** ********* * **************** ** ***** **** * consensus_10897#0 GCATA-TGAGTATGTAACT-AGTAT--GTGCAGCAGCGAGACACCATTG--CAGAATTGC 799 consensus_10897#2 GCATA-TGAGTATGTAACT-AGTAT--GTGCAGCAGCGAGACACCATTG--CAGAATTGC 214 consensus_10897#1 GCATAATGAGTATGTAACTGAGTGATGGTGCAGCAGCGAGACACCATTGGCTAGAATTGC 285 ***** ************* *** ********************** ******** consensus_10897#0 AGTT-AAGCTCTTGGTGTAGAATGCAT-TGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 857 consensus_10897#2 AGTT-AAGCTCTTGGTGTAGAATGCAT-TGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 272 consensus_10897#1 AGTTGAAGCTCTTGGTGTAGAATGCATGTGGCCAGAGTCAGATGCTAGAGGTTAATGCCT 345 **** ********************** ******************************** consensus_10897#0 GCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTA 917 consensus_10897#2 GCTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCCATGAATGAATCAATAAGATTAGTA 332 consensus_10897#1 -CTGCTTTTCAAAGGTTATGTGGATCTATTTGTGCTATGAATGAATCA-TAAGATTAGTA 403 ********************************** ************ *********** consensus_10897#0 ATA-TAAATCCTCCATGTTTGAATTTTGCTTTAAAAA 953 consensus_10897#2 ATA-TAAAAAA---AAAAAAAAAAAAAAAAAAAAAAA 365 consensus_10897#1 ATACTCAATCCTCCATGTTTGAATTTTGTTTTAAAA- 439 *** * ** * ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||