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Oryza sativa
cluster # 10904 cluster # 10904       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10904#0 length = 1903 sequences # 5  
consensus_10904#1 length = 1213 sequences # 3  

consensusID : consensus_10904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1903
fasta sequence
                              [CGCACTTGTCGTCTTGTCGCCTCAAAATTTCCTCTCTCCTCGCCACCGTCTCTTCTGTTTACGAGCTCCTCTCCAAATCCCCAAAACCCTAATCCAGCCAGCCGCCGCCGCCGCCGCCGCCATGGGAGGAGGAGGAGGAGGAGGGCGCAAGCCACGCAACTTCGCCACGTTCCGGCTGTTCCCGCGCGCCGGCGCCGCCGACCCCAACGACCGCGTCTTCGTCCGCGTCGACAGCAACGACTACACCGTCCCCGGCTTCGGCGACGACGACGCCTTCGACTCCTCATCCCTCTCCCTCACCGGTGACGCCGCCGCCGGCGATCACTTCTCCTCCGCCTCCGGCCCCCTCCCCGACCACGTCCGCCGCGAGATCCTCGAGCTCGGCCTCCCGGACGACGGCTACAATTACCTCCACCACCTCCGCGAGCTCCGCCCCTCCGCCGCCGCCGCCGCCTCATCCTTCGCGCCCAACCAGACTGCCCCGCCTCTCCCCCTCGACGTGAAGGCGTATGATGCCAGTAGGGTGCGGATTGCTTCTGGCAATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGCGAAGACAGCGCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCTCGACGAGACCGATGTCTCCCATGGCGGGTCGGAGGATGAGGGACTGGAGGAGGATTTTGTCATCATGGCAAACCGGGCTGAGGGGGATGAGGAGGAAGATGATGATGATGAAGAGGAGGAAGTGATGGATGGTGTGTTCTTAAGTGATGTTGAAGAGGAAGAGGAGTTTGAGGATGATGAGGGTGAGCCCAAGCCGAGGGTCCGGCGGTTGCTGGATGAACAGTTTGATTTGCTTGCTTTGGAAGAATATGGTGACAGTGATGATGATGATGATGATCCAGGTGTTAGAAATGGGGAATGTGAACTGCCTACTGAGGTTATTGATGAACTGAAACTGTTCCATAGTCAAAATGTATCTGTCACAGAAGAATATAGAACGCCGGCAGATTTTGTTCGTAGAAAATTGGATTCAAGCACAGCAGAGGAGGTGGATGAATCTGCTAATGTAATCCAAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCACGGAAAGCAAAGAAAGAGCTGAAAGGCCTGTACAAATTTGAAACACAGAAGGCTCAGAAGGTTGCTGCTGTTACAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTAAACATGTTCTGCACGATAACGACGCAATGTGAGTCGTAAGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACACTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTGTATACCATGTTTGGACTTCTGTATGAGAAATATGTCGTGTAAGA-CGTAGGTTATCTAATGGACACAGTGGCGCTATTTTGAATGTGA-TTTACACTGAAGTTACCCAAAAAAAAAAAAA]

[+] EMBL AK064323             [CGCACTTGTCGTCTTGTCGCCTCAAAATTTCCTCTCTCCTCGCCACCGTCTCTTCTGTTTACGAGCTCCTCTCCAAATCCCCAAAACCCTAATCCAGCCAGCCGCCGCCGCCGCCGCCGCCATGGGAGGAGGAGGAGGAGGAGGGCGCAAGCCACGCAACTTCGCCACGTTCCGGCTGTTCCCGCGCGCCGGCGCCGCCGACCCCAACGACCGCGTCTTCGTCCGCGTCGACAGCAACGACTACACCGTCCCCGGCTTCGGCGACGACGACGCCTTCGACTCCTCATCCCTCTCCCTCACCGGTGACGCCGCCGCCGGCGATCACTTCTCCTCCGCCTCCGGCCCCCTCCCCGACCACGTCCGCCGCGAGATCCTCGAGCTCGGCCTCCCGGACGACGGCTACAATTACCTCCACCACCTCCGCGAGCTCCGCCCCTCCGCCGCCGCCGCCGCCTCATCCTTCGCGCCCAACCAGACTGCCCCGCCTCTCCCCCTCGACGTGAAGGCGTATGATGCCAGTAGGGTGCGGATTGCTTCTGGCAATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGCGAAGACAGCGCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCTCGACGAGACCGATGTCTCCCATGGCGGGTCGGAGGATGAGGGACTGGAGGAGGATTTTGTCATCATGGCAAACCGGGCTGAGGGGGATGAGGAGGAAGATGATGATGATGAAGAGGAGGAAGTGATGGATGGTGTGTTCTTAAGTGATGTTGAAGAGGAAGAGGAGTTTGAGGATGATGAGGGTGAGCCCAAGCCGAGGGTCCGGCGGTTGCTGGATGAACAGTTTGATTTGCTTGCTTTGGAAGAATATGGTGACAGTGATGATGATGATGATGATCCAGGTGTTAGAAATGGGGAATGTGAACTGCCTACTGAGGTTATCGATGAACTGAAACTGTTCCATAGTCAAAATGTATCTGTCACAGAAGAATATAGAACGCCGGCAGATTTTGTTCGTAGAAAATTGGATTCAAGCACAGCAGAGGAGGTGGATGAATCTGCTAATGTAATCCAAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK073312             [                  GCCTCAAAATTTCCTCTCTCCTCGCCACCGTCTCTTCTGTTTACGAGCTCCTCTCCAAATCCCCAAAACCCTAATCCAGCCAGCCGCCGCCGCCGCCGCCGCCATGGGAGGAGGAGGAGGAGGAGGGCGCAAGCCACGCAACTTCGCCACGTTCCGGCTGTTCCCGCGCGCCGGCGCCGCCGACCCCAACGACCGCGTCTTCGTCCGCGTCGACAGCAACGACTACACCGTCCCCGGCTTCGGCGACGACGACGCCTTCGACTCCTCATCCCTCTCCCTCACCGGTGACGCCGCCGCCGGCGATCACTTCTCCTCCGCCTCCGGCCCCCTCCCCAACCACGTCCGCCGCGAGATCCTCGAGCTCGGCCTCCCGGACGACGGCTACAATTACCTCCACCACCTCCGCGAGCTCCGCCCCTCCGCCGCCGCCGCCGCCTCATCCTTCGCGCCCAACCAGACTGCCCCGCCTCTCCCCCTCGACGTGAAGGCGTATGATGCCAGTAGGGTGCGGATTGCTTCTGGCAATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGCGAAGACAGCGCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCTCGACGAGACCGATGTCTCCCATGGCGGGTCGGAGGATGAGGGACTGGAGGAGGATTTTGTCATCATGGCAAACCGGGCTGAGGGGGATGAGGAGGAAGATGATGATGATGAAGAGGAGGAAGTGATGGATAGTGTGTTCTTAAGTGATGTTGAAGAGGAAGAGGAGTTTGAGGATGATGAGGGTGAGCCCAAGCCGAGGGTCCGGCGGTTGCTGGATGAACAGTTTGATTTGCTTGCTTTGGAAGAATATGGTGACAGTGATGATGATGATGATGATCCAGGTGTTAGAAATGGGGAATGTGAACTGCCTACTGAGGTTATTGATGAACTGAAACTGTTCCATAGTCAAAATGTATCTGTCACAGAAGAATATAGAACGCCGGCAGATTTTGTTCGTAGAAAATTGGATTCAAGCACAGCAGAGGAGGTGGATGAATCTGCTAATGTAATCCAAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCACGGAAAGCAAAGAAAGAGCTGAAAGGCCTGTACAAATTTGAAACACAGAAGGCTCAGAAGGTTGCTGCTGTTACAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTAAACATGTTCTGCACGATAACGACGCAATGTGAGTCGTAAGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACACTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTGTATACCATGTTTGGACTTCTGTATGAGAAATATGTCGTGTAAGA CGTAGGTTATCTAATGGACACAGTGGCGCTATTTTGAATGTGA                                ]
[+] EMBL CB660436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATGCCAGTAGGGTGCGGATTGCTTCTGGCCATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGCGAAGACAGCGCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCTCGACGAGACCGATGTCTCCCATGGCGGGTCGGAGGATGAGGGACTGGAGGAGGATTTTGTCATCATGGCAAACCGGGCTGAGGGGGATGAGGAGGAAGATGATGATGATGAAGAGGAGGAAGTGATGGATGGTGTGTTCTTAAGTGATGTTGAAGAGGAAGAGGAGTTTGAGGATGATGAGGGTGAGCCCAAGCCGAGGGTCCGGCGGTTGCTGGATGAACAGTTTGATTTGCTTGCTTTGGAAGAATATGGTGACAGTGATGATGATGATGATGATCCAGGTGTTAGAAATGGGGAATGTGAACTGCCTACTGAGGTTATTGATGAACTGAAACTGTTCCATAGTCAAAATGTATCTGTCACAGAAGAATATAGAACGCCGGCAGATTTTGTTCGTAGAAAATTGGATTCAAGCACAGCAGAGGAGGTGGATGAATCTGCTAATGTAATCCAAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB660437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCACGGAAAGCAAAGAAAGAGCTGAAAGGCCTGTACAAATTTGAAACACAGAAGGCTCAGAAGGTTGCTGCTGTTACAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTAAACATGTTCTGCACGATAACGACGCAATGTGAGTCGTAAGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACACTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTGTATACCATGTTTGGACTTCTGTATGAGAAATATGTCGTGTAAGACCGTAGGTTATCTAATGGACACAGTGGCGCTATATGGGATG GATTTTACACTG                      ]
[-] EMBL CA762275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAGATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAGGCAAAGAGAGATTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCNCGGAAAGCAAAGAAAGAGCTGAGAGGCCTGTACAAATTTGAAACACAGAAGGCTCAGAAGGTTGCTGCTGTTGCAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTAAACATGTTCTGCACGATAACGACGCAATGTGTGTCGTAAGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACACTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTCTATACCATGTTTGGACTTCTGTATGAGAAATATGTCGTGTAAGA CGTAGGTTATCTAATGGACACAGTGGCGCTATTTTGAATGTGATTTTACACTGAAGTTACCCAAAAAAAAAAAAA]


>consensus_10904#0 CGCACTTGTCGTCTTGTCGCCTCAAAATTTCCTCTCTCCTCGCCACCGTCTCTTCTGTTT ACGAGCTCCTCTCCAAATCCCCAAAACCCTAATCCAGCCAGCCGCCGCCGCCGCCGCCGC CATGGGAGGAGGAGGAGGAGGAGGGCGCAAGCCACGCAACTTCGCCACGTTCCGGCTGTT CCCGCGCGCCGGCGCCGCCGACCCCAACGACCGCGTCTTCGTCCGCGTCGACAGCAACGA CTACACCGTCCCCGGCTTCGGCGACGACGACGCCTTCGACTCCTCATCCCTCTCCCTCAC CGGTGACGCCGCCGCCGGCGATCACTTCTCCTCCGCCTCCGGCCCCCTCCCCGACCACGT CCGCCGCGAGATCCTCGAGCTCGGCCTCCCGGACGACGGCTACAATTACCTCCACCACCT CCGCGAGCTCCGCCCCTCCGCCGCCGCCGCCGCCTCATCCTTCGCGCCCAACCAGACTGC CCCGCCTCTCCCCCTCGACGTGAAGGCGTATGATGCCAGTAGGGTGCGGATTGCTTCTGG CAATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGCGAAGACAGC GCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCTCGACGAGAC CGATGTCTCCCATGGCGGGTCGGAGGATGAGGGACTGGAGGAGGATTTTGTCATCATGGC AAACCGGGCTGAGGGGGATGAGGAGGAAGATGATGATGATGAAGAGGAGGAAGTGATGGA TGGTGTGTTCTTAAGTGATGTTGAAGAGGAAGAGGAGTTTGAGGATGATGAGGGTGAGCC CAAGCCGAGGGTCCGGCGGTTGCTGGATGAACAGTTTGATTTGCTTGCTTTGGAAGAATA TGGTGACAGTGATGATGATGATGATGATCCAGGTGTTAGAAATGGGGAATGTGAACTGCC TACTGAGGTTATTGATGAACTGAAACTGTTCCATAGTCAAAATGTATCTGTCACAGAAGA ATATAGAACGCCGGCAGATTTTGTTCGTAGAAAATTGGATTCAAGCACAGCAGAGGAGGT GGATGAATCTGCTAATGTAATCCAAAAATGTGCTGAATATGCTGAAAGGTATTTAAATGA AACTGCTGAAGAGGAAGAAGTTGTACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTG GGACTGTGAGACTATTGTTTCCACATACTCAAATCTTGACAACCATCCTGGAAAGATTCA AACACCAGGAAATCCTAAAAATAGGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAAC GAAAGATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAG GAAAAGAAATGGTGAGAAGGAGAAGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAG TTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGT GAAAGAAGAGAAGAGAGAAGCACGGAAAGCAAAGAAAGAGCTGAAAGGCCTGTACAAATT TGAAACACAGAAGGCTCAGAAGGTTGCTGCTGTTACAGGGCCAGCTTCTATACGGCTAAT GTAATAACCATGTTGATTTGTAAACATGTTCTGCACGATAACGACGCAATGTGAGTCGTA AGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACACTGATACCTCCTGGGT CATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTGTATACCATGTTTGGA CTTCTGTATGAGAAATATGTCGTGTAAGACGTAGGTTATCTAATGGACACAGTGGCGCTA TTTTGAATGTGATTTACACTGAAGTTACCCAAAAAAAAAAAAA



consensusID : consensus_10904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1213
fasta sequence
                              [GGGAGATGATGACGCGCCTTCCTCCTCCGCCTCCGGCGAGACGGGCCCCCTCCCCGACCACGTCCGCCGCGAGATCCTGGAGCTCGGCCTGCCCGACGACGGCTACGACTACCTCGCCCACCTCCGCGAGATCCGCCCCTCGATCTCCTCCACCGGCGGCGGCGGCGCCTCCGCCGCCTTCCTCCCCGTCCGCCGCCACGCCCGCGCGCACTTCGGCCCCCCTGTGGACGTCAAGGCCTACGACGCGAGCCGCGTTCGGATCGGCTCCTCCGGTAAGGAGACCACCACGGCGACGGCGGCGGCGGTGGAGGTGGAGGTGACGCGGATCGAGAATGCCATCGATCCTGATGTCGCCAGGTTGCTCGAGGAGAGCGGTGAGCCGGCGCTGGCCGGATCGGAGTCGGAGTCGGAGTCGGAGGACGACGATCTGGAGGAGGATTTCGTCCTCGTCGCAAATCAGGACGACGATGATTTTGTTCTCGTTGAAATTGAAAATCAGTTTGAGGAGGAAGAGGAAAACATTGCTGCGGCTGATGATTCAGAGGAGGACGGTTTGAAGAATGGTGAGTGCAAAGTGGGGAATTCAGCGTCAGCTTGATGAACAGCTTCCTATCGTGGTAAGATTACTGCCCCTGATTTACTGTTTGATTATTTATTGTTATTGCCAATCCACATCAAGAGAATTTAGAGAATTTACTTCTCTAAATTCCTGTACATCAAGAGAATTTAGCTTGGAGATATAGAGCCTGTGTTTCTTTCCATTATCTAGTTAAAAAAAACATGTTTGATGTTTACGATTTTAGTTCTAACTATCAACACAACCTGCTTGCGTGCATCTTCTGTTTATCGCAGTATCCCTGTCGATGAAAAATCCAATTTTTAACTTTTTCAGGCACTTGACTTCAGATTTGGCTCTGTAATT-CACAGAGCCTGTGCTATCGAAGAACAGGCGGAAAGTTATGACGCAGCCAGTGAGTGAGTGAGTTATTCATTGTAGCGAGACGATGAACTCATAATGTCTCGTCATAATGTAATATCAATCATCAGAT-ATCAGTTA-GATT-AGTAATAGTAAAATCCTACCACAATATTCCTAGCATTTCTTGTGACTTTGCCTTCGTGCAATATTCCTCTACCACCACGATTTAATATATTTCTGAAAATTTGGAGAGCCATAAAAGGGGGGAAAAGCATTCAACTGCTACTGAATCTCTCG]

[+] EMBL AK109879             [GGGAGATGATGACGCGCCTTCCTCCTCCGCCTCCGGCGAGACGGGCCCCCTCCCCGACCACGTCCGCCGCGAGATCCTGGAGCTCGGCCTGCCCGACGACGGCTACGACTACCTCGCCCACCTCCGCGAGATCCGCCCCTCGATCTCCTCCACCGGCGGCGGCGGCGCCTCCGCCGCCTTCCTCCCCGTCCGCCGCCACGCCCGCGCGCACTTCGGCCCCCCTGTGGACGTCAAGGCCTACGACGCGAGCCGCGTTCGGATCGGCTCCTCCGGTAAGGAGACCACCACGGCGACGGCGGCGGCGGTGGAGGTGGAGGTGACGCGGATCGAGAATGCCATCGATCCTGATGTCGCCAGGTTGCTCGAGGAGAGCGGTGAGCCGGCGCTGGCCGGATCGGAGTCGGAGTCGGAGTCGGAGGACGACGATCTGGAGGAGGATTTCGTCCTCGTCGCAAATCAGGACGACGATGATTTTGTTCTCGTTGAAATTGAAAATCAGTTTGAGGAGGAAGAGGAAAACATTGCTGCGGCTGATGATTCAGAGGAGGACGGTTTGAAGAATGGTGAGTGCAAAGTGGGGAATTCAGCGTCAGCTTGATGAACAGCTTCCTATCGTGGTAAGATTACTGCCCCTGATTTACTGTTTGATTATTTATTGTTATTGCCAATCCACATCAAGAGAATTTAGAGAATTTACTTCTCTAAATTCCTGTACATCAAGAGAATTTAGCTTGGAGATATAGAGCCTGTGTTTCTTTCCATTATCTAGTTAAAAAAAACATGTTTGATGTTTACGATTTTAGTTCTAACTATCAACACAACCTGCTTGCGTGCATCTTCTGTTTATCGCAGTATCCCTGTCGATGAAAAATCCAATTTTTAACTTTTTCAGGCACTTGACTTCAGATTTGGCTCTGTAATT CACAGAGCCTGTGCTATCGAAGAACAGGCGGAAAGTTATGACGCAGCCAGTGAGTGAGTGAGTTATTCATTGTAGCGAGACGATGAACTCATAATGTCTCGTCATAATGTAATATCAATCATCAGAT ATCAGTTA GATT AGTAATAGTAAAATCCTACCACAATATTCCTAGCATTTCTTGTGACTTTGCCTTCGTGCAATATTCCTCTACCACCACGATTTAATATATTTCTGAAAAT                                                    ]
[-] EMBL AA754212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTCTGTAATTACACAGAGCCTGTGCTATCGNAGAACAGGCGGAAAGTTATGACGCAGCCAGTGAGTGAGTGAGTTATTCATTGTAGCGAGACGATGAACTCATAATGTCTCGTCATAATGTAATATCAATCATCAGAT ATCAGTTA GATT AGTAATAGTAAAATCCTACCACAATA TCCTAGCATTTCTTGTGACTTTGCCTCCGTGCAATATTCCTCTACCACCACGATTTAATATATTTCTGAAAATTTGGAGAGCCATAAAAGGGGGGAAAAGCATTCAACTGCTACTGAATCTCTCG]
[+] EMBL BQ906959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tgCAGATGATCAGTTAGGATTGAGTAATAG GAAATCCTACCACAATATTCCTAGCATTTCTTGTGACTTTGCCTTCGTGCAATATTCCTCTACCACCACGATTTAATATATTTCTGAAAATTTGGAGAGCCAAAAAAaaaaaa                              ]


>consensus_10904#1 GGGAGATGATGACGCGCCTTCCTCCTCCGCCTCCGGCGAGACGGGCCCCCTCCCCGACCA CGTCCGCCGCGAGATCCTGGAGCTCGGCCTGCCCGACGACGGCTACGACTACCTCGCCCA CCTCCGCGAGATCCGCCCCTCGATCTCCTCCACCGGCGGCGGCGGCGCCTCCGCCGCCTT CCTCCCCGTCCGCCGCCACGCCCGCGCGCACTTCGGCCCCCCTGTGGACGTCAAGGCCTA CGACGCGAGCCGCGTTCGGATCGGCTCCTCCGGTAAGGAGACCACCACGGCGACGGCGGC GGCGGTGGAGGTGGAGGTGACGCGGATCGAGAATGCCATCGATCCTGATGTCGCCAGGTT GCTCGAGGAGAGCGGTGAGCCGGCGCTGGCCGGATCGGAGTCGGAGTCGGAGTCGGAGGA CGACGATCTGGAGGAGGATTTCGTCCTCGTCGCAAATCAGGACGACGATGATTTTGTTCT CGTTGAAATTGAAAATCAGTTTGAGGAGGAAGAGGAAAACATTGCTGCGGCTGATGATTC AGAGGAGGACGGTTTGAAGAATGGTGAGTGCAAAGTGGGGAATTCAGCGTCAGCTTGATG AACAGCTTCCTATCGTGGTAAGATTACTGCCCCTGATTTACTGTTTGATTATTTATTGTT ATTGCCAATCCACATCAAGAGAATTTAGAGAATTTACTTCTCTAAATTCCTGTACATCAA GAGAATTTAGCTTGGAGATATAGAGCCTGTGTTTCTTTCCATTATCTAGTTAAAAAAAAC ATGTTTGATGTTTACGATTTTAGTTCTAACTATCAACACAACCTGCTTGCGTGCATCTTC TGTTTATCGCAGTATCCCTGTCGATGAAAAATCCAATTTTTAACTTTTTCAGGCACTTGA CTTCAGATTTGGCTCTGTAATTCACAGAGCCTGTGCTATCGAAGAACAGGCGGAAAGTTA TGACGCAGCCAGTGAGTGAGTGAGTTATTCATTGTAGCGAGACGATGAACTCATAATGTC TCGTCATAATGTAATATCAATCATCAGATATCAGTTAGATTAGTAATAGTAAAATCCTAC CACAATATTCCTAGCATTTCTTGTGACTTTGCCTTCGTGCAATATTCCTCTACCACCACG ATTTAATATATTTCTGAAAATTTGGAGAGCCATAAAAGGGGGGAAAAGCATTCAACTGCT ACTGAATCTCTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10904#0      CGCACTTGTCGTCTTGTCGCCTCAAAATTTCCTCTCTCCTCGCCACCGTCTCTTCTGTTT 60
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      ACGAGCTCCTCTCCAAATCCCCAAAACCCTAATCCAGCCAGCCGCCGCCGCCGCCGCCGC 120
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CATGGGAGGAGGAGGAGGAGGAGGGCGCAAGCCACGCAACTTCGCCACGTTCCGGCTGTT 180
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CCCGCGCGCCGGCGCCGCCGACCCCAACGACCGCGTCTTCGTCCGCGTCGACAGCAACGA 240
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      CTACACCGTCCCCGGCTTCGGCGACGACGACGCCTTCGACTCCTCATCCCTCTCCCTCAC 300
consensus_10904#1      ---------------------------------------------------------GGG 3
                                                                                   

consensus_10904#0      CGGTGACGCCGCCGCCGGCGATCACTTCTCCTCCGCCTCCGGCCCCCTCCCCGACCACGT 360
consensus_10904#1      AGATGATGACGCGCCTTCCTCCTCCGCCTCCGGCGAGACGGGCCCCCTCCCCGACCACGT 63
                        * *** * ***  *   *     *  ****  **   * ********************

consensus_10904#0      CCGCCGCGAGATCCTCGAGCTCGGCCTCCCGGACGACGGCTACAATTACCTCCACCACCT 420
consensus_10904#1      CCGCCGCGAGATCCTGGAGCTCGGCCTGCCCGACGACGGCTACGACTACCTCGCCCACCT 123
                       *************** *********** ** ************ * ******  ******

consensus_10904#0      CCGCGAGCTCCGCCCCTC------CGCCGCCGCCGCCGCCTCATCCTTCGCGCCCAACCA 474
consensus_10904#1      CCGCGAGATCCGCCCCTCGATCTCCTCCACCGGCGGCGGCGGCGCCTCCGCCGCCTTCCT 183
                       ******* **********      * ** *** ** ** *    *** ***  **  ** 

consensus_10904#0      GACTGCCC--CGCCTCTCCCCCTCG-ACGTGAAGGCGTATGATGCCAGTAGGGTGCGGAT 531
consensus_10904#1      CCCCGTCCGCCGCCACGCCCGCGCGCACTTCGGCCCCCCTGTGGACGTCAAGGCCTACGA 243
                         * * **  **** * *** * ** ** *     *   **  * *   * **       

consensus_10904#0      TGCTTCTGGCAATGTTGAGGATGAGATGGACGAGGGGAGGACGATGTGTAAGGTGGCCGC 591
consensus_10904#1      CGCGAGCCGCGTTCGGATCGGCTCCTCCGGTAAGGAGACCACCACGGCGACGGCGGCGGC 303
                        **     **  *      *        *   *** **  ** * *   * ** *** **

consensus_10904#0      GAAGACAGCGCCTGTGAGGCGGATTGAGAGGGCGGTTGATCCTGACATCGCGAGGTTGCT 651
consensus_10904#1      GGTGGAGGTGGAGGTGACGCGGATCGAGAATGCCATCGATCCTGATGTCGCCAGGTTGCT 363
                       *  *   * *   **** ****** ****  **  * ********  **** ********

consensus_10904#0      CGACGAGACCGATGTCTC--CCATGGC-------------------GGGTCGGAGGATGA 690
consensus_10904#1      CGAGGAGAGCGGTGAGCCGGCGCTGGCCGGATCGGAGTCGGAGTCGGAGTCGGAGGACGA 423
                       *** **** ** **   *  *  ****                   * ********* **

consensus_10904#0      GGGACTGGAGGAGGATTTTGTCATCATGGCAAACCGGGCTGAGGGGGATGAGGAGGAAGA 750
consensus_10904#1      CGATCTGGAGGAGGATTTCGTCCTCGTCGCAAATCAGGACGACGATGATTTTGTTCTCGT 483
                        *  ************** *** ** * ***** * **  ** *  ***   *     * 

consensus_10904#0      TGATGATGATGAAGAG---GAGGAAGTGATGGATGGTGTGTTCTTAAGTGATGTTGAAGA 807
consensus_10904#1      TGAAATTGAAAATCAGTTTGAGGAGGAAGAGGAAAACATTGCTGCGGCTGATGATTCAGA 543
                       ***   ***  *  **   ***** *    ***     *         ***** *  ***

consensus_10904#0      GGAAGAGGAGTTTGAGGATGATGAGGGTGAGCCCAAGCCGAGGGTCCGGCGGTTGCTGGA 867
consensus_10904#1      GGAGGACGGTTTGAAGAATGGTGAGTG-----CAAAGTGGGGAATTCAGCGTCAGCTTGA 598
                       *** ** *  **  ** *** **** *     * ***  * *  * * ***   *** **

consensus_10904#0      TGAACAGTTTGATTTGCTTGCTTTGGAAGAATATGGTGACAGTGATGATGATGATGATGA 927
consensus_10904#1      TGAACAGCTT------CCTATCGTGGTAAGAT-TACTGCCCCTGATTTACTGTTTGATTA 651
                       ******* **      * *    *** *  ** *  ** *  ****        **** *

consensus_10904#0      TCCAGGTGTTAGAAATGGGGAATGTGAACTGCCTACTGAGGTTATTGATGAACTGAAACT 987
consensus_10904#1      TTTAT-TGTTATTGCCAATCCACATCAAGAGA--ATTTAGAGAATTTACTTCTCTAAATT 708
                       *  *  *****          *  * **  *   * * **   *** *       *** *

consensus_10904#0      GTTCCATAGTCAAAATGTATCTGTCACAGAAGAATATAGAACGCCGGCAGATTTTGTTCG 1047
consensus_10904#1      CCTGTACA-TCAAGA-GAATTTAGCTTGGA--GATATAGA--GCCTGT-GTTTCTTTCCA 761
                         *  * * **** * * ** *  *   **   *******  *** *  * ** * * * 

consensus_10904#0      TAGAAAATTGGATTCAAGCACAGCAGAGGAGGTGGATGAATCTGCTAATGTAATCCAAAA 1107
consensus_10904#1      TTATCTAGTTAAAAAAAACATGTTTGATGTTTACGATTTTAGTTCTAAC-TATCAACACA 820
                       *     * *  *   ** **     ** *     ***     * ****  **     * *

consensus_10904#0      ATGTGCT-GAATATG-CTGAAAGGTATTTAAATGAAACTGCTGAAGAGGAAG--AAGTTG 1163
consensus_10904#1      ACCTGCTTGCGTGCATCTTCTGTTTATCGCAGTATCCCTGTCGATGAAAAATCCAATTTT 880
                       *  **** *  *    **      ***   * *    ***  ** **  **   ** ** 

consensus_10904#0      TACTTGTTTCAGAAAGCAGTGATGAGTCTGAAGTTTGGGACTGTGAGACTATTGTTTCCA 1223
consensus_10904#1      TAACTTTTTCAG------GCACTTGACTTCAGATTTGGCTCTGTAA--------TTCACA 926
                       **  * ******      *   *     * *  *****  **** *        **  **

consensus_10904#0      CATACTCAAATCTTGACAACCATCCTGGAAAGATTCAAACACCAGGAAATCCTAAAAATA 1283
consensus_10904#1      GAGCCTGTGCTATCGAAGAACAGGC--GGAAAGTTATGACGC------AGCCAGTGAGTG 978
                        *  **    * * **  * **  *  * **  **   ** *      * **    * * 

consensus_10904#0      GGCTCCCTAAAGTTTTTCCTGGAGAAACAGCTACAACGAAAGATATCATCAGGCTTCAAG 1343
consensus_10904#1      AGT------GAGTTATTCATTG-----TAGCGA-GACGATGAAC-TCATAATGTCTCGTC 1025
                        *        **** *** * *      *** *  ****   *  **** * *  **   

consensus_10904#0      GCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGA 1403
consensus_10904#1      ATAATGTAATATCAATCATCAGATATCAGTTA-----GATTAGTAATAGTAA-AATCCTA 1079
                         ** *  * *       *   *** *    *     **  ** *** ** * **    *

consensus_10904#0      AGAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGG 1463
consensus_10904#1      CCACAATATTCCTAGC----ATTTCTTGTGACTTTGCCTTCGTGCAATATTCCTCTACCA 1135
                         * *  *   * * *    * * *  ***        **   * **    *    *   

consensus_10904#0      AAACAAAGGAGGAAAAGAAAGCAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCAC 1523
consensus_10904#1      CCAC----GATTTAATATATTTCTGAAAATTTGGAGAGCCATAAAAGGGGGGAAAAGCAT 1191
                         **    **   **   *     ****   ** ** *  * ** **  * ** ***** 

consensus_10904#0      GGAAA-GCAAAGAAAGAGCTGAAAGGCCTGTACAAATTTGAAACACAGAAGGCTCAGAAG 1582
consensus_10904#1      TCAACTGCTACTGAATCTCTCG-------------------------------------- 1213
                         **  ** *   **   **                                        

consensus_10904#0      GTTGCTGCTGTTACAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTA 1642
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AACATGTTCTGCACGATAACGACGCAATGTGAGTCGTAAGGAGATCCTCATCCTACAAGG 1702
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TACGACGGCAAGATATGATACACTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGT 1762
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TTTTGTCGACTAGATACCCAGTGTATACCATGTTTGGACTTCTGTATGAGAAATATGTCG 1822
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      TGTAAGACGTAGGTTATCTAATGGACACAGTGGCGCTATTTTGAATGTGATTTACACTGA 1882
consensus_10904#1      ------------------------------------------------------------
                                                                                   

consensus_10904#0      AGTTACCCAAAAAAAAAAAAA 1903
consensus_10904#1      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)