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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1571 fasta sequence
[TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAGTCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCCGGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGC-AGGAGGATCTGGATC-TGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT-AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC-GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073948 [TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAGTCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCCGGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGC AGGAGGATCTGGATC TGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATG ]
[+] EMBL AU070230 [ CGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA CTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCANGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGNAAATTTTCATTACAGGGGCTACGATGCACATGGCAAGGAGGATCTGGATCTTGATC ]
[-] EMBL CB655083 [ TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAAGAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTCTCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACT AAAAGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAAATGGAGACTAATATATATGTTTT ]
[+] EMBL AU092897 [ ggtgGCTACTAAAAAGCTCAGCACCTACGCACAATGGGAATNTACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACACCCTTAGGGGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU184790 [ GGTTTCATTCATTTCGCATAAAATTTGAAAAGGGGCATGGGGTTNTNCCAAGTGGTAAAGTTANGTTTCTATTTTCCCTGCTGTTCTCGGCCATTATCCATCCTTAGGAGGAAAGGTGCTGCGTTAAAAAGGACTGCATTCCANCAAATTTCATNTNTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCNCAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAA ]
[+] EMBL AU056326 [ GGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTC GACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTAAGGATCCAGATTGAGACTAATATATATGTNTTTTTAAAAAA ]
consensusID : consensus_10906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[CACGTCTCCTCCTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA-CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTG-AAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGGATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG]
[+] EMBL C28358 [CACGTCTCCTCCTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGA CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTG AAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAG ]
[+] EMBL CB655082 [ GTCTCCTCTTCTCCGACGCAGCAAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGCGGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCCAAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCAGGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTCATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGCGCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTCAGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGGATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGATGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTACATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCTTAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGACTGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10906#0 TCCACCCAACGGCGGAGGCGACGACCCGATATTCCGATCCGCCGGCGCCGGCGCCGCCAG 60
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TCGCCGACTTTATCGGCCGTGCGGCTCACTCCACTCCGGGCGCCGCCGCCGCTGATCGCC 120
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 GGCTTCATCAAGGATTCCTCCTCTCCTATTGGGAAGCTTCGGGCTCCTCTTTTTTTCCTC 180
consensus_10906#1 --------------------------------CACGTCTC---CTCCTCTCCGACGCAGC 25
* * ** ******* * *
consensus_10906#0 AAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGC 240
consensus_10906#1 AAGGAGGAGATCCCCTGCGGCGGCGCCGTCGAGCCGGTGGGGGAAGGGAGAGCTTGAGGC 85
************************************************************
consensus_10906#0 GGAGGCGGAGGCAGAGCGTGAGCTCCGAACCACCACCATGGGGACCTCTGCGCAGGAGCC 300
consensus_10906#1 GGAGGCGGAGGCAGAGCGTGA-CTCNGAACCACCACCATGGGGACCTCTGCGCAGGAGCC 144
********************* *** **********************************
consensus_10906#0 AAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCA 360
consensus_10906#1 AAATCTCTGGAAGCAAATCGACGACGCCGAGCACTATCTGGTCAGCGGATTGTTCGAGCA 204
************************************************************
consensus_10906#0 GGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTC 420
consensus_10906#1 GGCCGTATCCACTGCCTTATCTGTATCCAGTCAAGTACATTCGGCTGCCATGGAGAATTC 264
************************************************************
consensus_10906#0 ATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGC 480
consensus_10906#1 ATGCGACCATGATGAGCTTCTGGAAATGCTTGAATTAGCTGGGATGGTACTTGTTCAGGC 324
************************************************************
consensus_10906#0 GCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTC 540
consensus_10906#1 GCTTAAAGAACTTAAGAGGACATCTGAGATGTTTATCCAGCTCAAGACAATCTACGGTTC 384
************************************************************
consensus_10906#0 AGTGGCATCAATACCATTGAAAATTTTCATTACAGGGGCTACGATGCACATGGCAGGAGG 600
consensus_10906#1 AGTGGCATCAATACCATTGAAA-TTTTCATTACAGGGGCTACGATGCACATGGCAGGAGG 443
********************** *************************************
consensus_10906#0 ATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGA 660
consensus_10906#1 ATCTGGATCTGATCTTAGACCAATCTTCGATGAATACCTTGCTAAATGGAGATATACTGA 503
************************************************************
consensus_10906#0 TGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTAC 720
consensus_10906#1 TGATCAAGTTTATGTTTTAGATGAAGGAAAGAACAGCTCCTCAAATGGGTTGGTTGTTAC 563
************************************************************
consensus_10906#0 ATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCT 780
consensus_10906#1 ATCGGTTATGTCACCTGAACAATATTTTGAGGTGGCAGAGTTGTACACGGTAACATTCCT 623
************************************************************
consensus_10906#0 TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGAC 840
consensus_10906#1 TAGTGTTGTCTCCCATGAGACTGCAACTGCTATCTCATGGACTGAAAAGGCTGAGTTGAC 683
************************************************************
consensus_10906#0 TGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTGCAGCTAATAA 900
consensus_10906#1 TGAACAAGATCGGCAGGACCTATTGAGAAAACTTCATGCGTTACAATCTG---------- 733
**************************************************
consensus_10906#0 GAAGTCCACCAATCAGGGTGCAAAACTATCAGAATCAGCAGAAAGAAACCTTTCCACTTC 960
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TCAGAATGGCTCAATATCACCAGCACATGAGGATGCTACTAAAAGCTCAGCACCTACGCA 1020
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 CAATGGGAATATACAGGGACTTAGAAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCA 1080
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 ACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATTCATTTCGCATAAAATT 1140
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTT 1200
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 CTCGACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACA 1260
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 AATTTCATCTCTGCGACGGGGCTTCCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGAT 1320
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 AAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTGCTAGCTGGTGATGTAG 1380
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATG 1440
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TGATACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACT 1500
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 TCCTTGTAAGGATCCAGATTGAGACTAATATATATGTTTTTTTAAAAAAAAAAAAAAAAA 1560
consensus_10906#1 ------------------------------------------------------------
consensus_10906#0 AAAAAAAAAAA 1571
consensus_10906#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||