These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 969 fasta sequence [CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCG-CAGCAGCAGCTCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAG-ACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGCTTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGC-AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC-TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA] [+] EMBL AU222756 [CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCG CAGCAGCAGCTCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAG ACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCAT ] [+] EMBL OSS0744A [CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCG GCCGGAGGAGNCAG GCAGCTCTCCGGCGGCGGGGACACG CCGCGGCGGCGG GCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTC ] [+] EMBL BM420964 [ TGTTCATCTCGCTGTTC T GGGGTGTTCGAGTACAGAGTGGGGATTCATCATGAAATTCTGCAAGATTTTGGAGTACT GCCTGCAAGGGGAATGTTACAGATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGCTTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTGT CTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGCAAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGAC GATTCCAACCAGGACGATCTGACA TTACTTGTTCA TGTAGATAAAATTTG TTGTTTTTGTTCCT CCGCTTGCCTATATCTTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTNGTTGATGTAaaaa ] [+] EMBL AU222757 [ TCTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTNTAGGCAGCAGAAAGC AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA] [+] EMBL AU222768 [ CTCGGGTGTGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGC AACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA] [+] EMBL AU100787 [ tnCTTGCTCAGTGTAGANNAAATTTGTTTGTTTTTGTTCCTGCCNCTTGCCTATATC TTGTTCGTGGTCACCATCATTTGAAGTAAANCCAAAACTACTCTTGTTGATGTATATCGNGAACTTGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTTCCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCCAATCAACTGACAAAAA] consensusID : consensus_10916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCAGCTCTCCGGCGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCT] [+] EMBL C27019 [TCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCAGCTCTCCGGCGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATATTCGGGGGCATATTCCGGTGCTACGCGGTGGTCATCT] consensusID : consensus_10916#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATCTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGA] [+] EMBL AA753172 [GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAGCAGTCAAGGATCTGGAGGAGCTGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTTGCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTTCAGTGTAGATAAAATTTGTTTGTTTTTGTTCCTGCCGCTTGCCTATATCTTGTTCGTGGTCACCATCATTTGAAGTAAATCCAAAACTACTCTTGTTGATGTATATCGAGAACTTGTTTTTTTTTTCCAACTCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10916#0 CTCGAGCTCGAAGCTTCTCGGAAATCTAACCCTAACCCTAACCCTAAAGGCTAGCCATGG 60 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 CCAAGGGGGCCGCGTCGGCGTCGGGAGGCGGCGGCGCCGCGCCGGAGGCGCAGCAGCAGC 120 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 TCTCCGGCGGCGGGGACACGCCCGCGGCGGCGGCGCCCCACGCGGTCCAGGTCCGACCCG 180 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 CTCCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCGCCGCCACCGCCGCGCTCTGCGTC 240 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 GCCGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCGCACCGGCCTCGACATATTCGGGGGC 300 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 ATATTCCGGTGCTACGCGGTGGTCATCTCGCTGTTCGTGGGGGTGGTCGAGACAGAGTGG 360 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 GGATTCATCATGAAATTCTGCAAGATTTTGGAGTACTGGCCTGCAAGGGGAATGTTACAG 420 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 ATCTTTGTTGCTGTCATGACAAAGGCATACCCAATGTTGAAAGGGGTGATTTGATTTTGC 480 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 TTGAAGACATTGCCAGCTATCTGCTTCTTGCATGTGGACTGATCTATATAATCTCGGGTG 540 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 TGCTGTGCATTGGTGTGTTGAAGCGTTCTAGGCAGCAGAAAGCAACATCACGAGAACAAG 600 consensus_10916#2 -----------------------GATTCGCTNGAGCAGAAAGCAACATCACGAGAACAAG 37 consensus_10916#1 --------------------------TCGGAAATCTAACCCTAACCCTAACCCTAAAGGC 34 ** * * * * ** ** consensus_10916#0 CAGTCAAGGATCTGGAGGAGC-TGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTT 659 consensus_10916#2 CAGTCAAGGATCTGGAGGAGC-TGGAGAAACGGAGAGAAGAACTTGAGGCACTTCTACTT 96 consensus_10916#1 TAGCCATGGCCAAGGGGGCGCGTCGNNTCGGGAGGCNGCGGCNNCCGGANGNCAGCAGCA 94 ** ** ** ** ** ** * * * * * * * consensus_10916#0 GCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTT 719 consensus_10916#2 GCTCAGAGGTCTGAGACGGTCTGACGGATTCCAACCAGGACGATCTGACATTTACTTGTT 156 consensus_10916#1 GCTCTCCGG--CGGCGGGGACACGCGNCTGGCGCCCCACGCGGTCCAGGTCCGACCCGCT 152 **** ** * ** * ** * * ** ** ** ** * * consensus_10916#0 CAGTGTAG-ATAAAATTTGTTTGTTTTTGTTCCTGCCGCT--TGCCTATATCTTGTTCGT 776 consensus_10916#2 CAGTGTAG-ATAAAATTTGTTTGTTTTTGTTCCTGCCGCT--TGCCTATATCTTGTTCGT 213 consensus_10916#1 CCTCATCGTGTGCCGCTGCTTTAATGTCGTCACCNCCGCCACCGCCGCGCTCTGNTNCGC 212 * * * * * *** * * ** * **** *** *** * ** consensus_10916#0 GGTCACCATCATTT--GAAGTA-AATCCAAAACTACTCTTGTTGATGTATATCGAGAACT 833 consensus_10916#2 GGTCACCATCATTT--GAAGTA-AATCCAAAACTACTCTTGTTGATGTATATCGAGAACT 270 consensus_10916#1 CGTCAACGTCCTCTCCGCCGTGCAGTCCTTCCNCACCGGCCTCGACATAT-TCGGGGGCA 271 **** * ** * * * ** * *** ** * ** *** *** * * consensus_10916#0 TGTTTTTTTTTTCCAACTCTGAATTGTTCTCCTTTTTGTTTCCACTAAAGTGTAGTTCTT 893 consensus_10916#2 TGTTTTTTTTTTCCAACTCTGA-------------------------------------- 292 consensus_10916#1 TATTCCGGTGCTACG-CGGTGGTCATCT-------------------------------- 298 * ** * * * * ** consensus_10916#0 CCCCTCATCTACCTGTAATTCCAATAAACTCTTGTTTTTCTTTTGTGGGGAAGTAAAGCC 953 consensus_10916#2 ------------------------------------------------------------ consensus_10916#1 ------------------------------------------------------------ consensus_10916#0 AATCAACTGACAAAAA 969 consensus_10916#2 ---------------- consensus_10916#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||