These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2098 fasta sequence [CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACGTTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAATGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCTACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATCAAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGAAAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCGATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGT] [+] EMBL AK071358 [CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACGTTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAATGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCTACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATCAAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGAAAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCGATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGTAGT] [+] EMBL CF303451 [ TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTCTAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATGTTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCACCAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTGGAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGTGGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCTCTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTGTTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAGGTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTGATATTTCATTCAAAGCTGAATGTCAAAT ] consensusID : consensus_10921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence [TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTATTCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTCTCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA] [+] EMBL CB658148 [TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTATTCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAG ] [-] EMBL CB658149 [ ATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAGCAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTCTCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA] consensusID : consensus_10921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1176 fasta sequence [ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT-CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGT] [+] EMBL CB654257 [ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCCCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCC TGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCCAAGCAGGATCCTTGGTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACCTCCATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGTCCAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAA ] [+] EMBL AK060329 [ gCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCATAATAGT] [+] EMBL AK104164 [ TCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGCCCTGACACGGTGGGCATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGATGTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCCATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGCGCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTCGCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTTCCGGTTGACATCAATTGTGTCATAAGCAACCATGATCGACTTAAAGATAACCATGT CAGACGTTTCCTTGAGAGACATGGGATCCCCTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGAAGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAAT ] consensusID : consensus_10921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TCCCGTCTTGTATGGACTTCCCCCACTCATGATCAAACCTGTCAGCTTACCATTTTTTTTGTGACAGATATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCTTTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTAAGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCAGCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGAAGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCAT] [-] EMBL CB630637 [TCCCGTCTTGTATGGACTTCCCCCACTCATGATCAAACCTGTCAGCTTACCATTTTTTTTGTGACAGATATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCTTTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTAAGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCAGCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGGTGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGAAGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGTTGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGGAGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATACTCCAAAGCAAATAAAATGATAATGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 CGCTCTCTCTCTCTCTCGACGAGAGAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGC 60 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 CGGCCCCTCTCCGCCGCCGTCCCCGTCGGCAACCTCCTCGGCATCCACCTCTTCCAATGC 120 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 CCTGTAACTACTGTCTACTCCTATTTTCCCTCCTCAATCCATCTCTACCCTTACTACTTC 180 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 TAATTTTTTTATTTTTATTTTTATTTTTTTTGGAAAAATAATAATTATATCATTACGATG 240 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 TTAGTATTGAGGAGGAGGAATCATTAAAATGGAATCCCCTCCCCTCAAACAATACAGCAC 300 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 CAACCATGGTTTGGTTTGTCCAAATCGGGGGAAGAAGAAATTTAGGAATGGACTGGAGTG 360 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 GAGGAACAAGATGACTGATGCTCCATGGTGGGGATATAATAAATAACAAGATGAACGTGT 420 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 GGAGACACACTGGACATTTGGGTTTCTATTTCACCCATTGGAACTCTCCAAATCTCCTCT 480 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 CTGTTTTTTTAATTATTATTTCTTTCATCTAAATTAACGTCGTCTACATAGTCTTGTCTG 540 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 TTTTAAAGATTATATTTGCTAGCTATTCTAATCTTATTTTCTTATAATAAGGTGGTCGAG 600 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 GTATTCCTTCACCTCTCTACATTTTACTTGCTCTTCTCTCATCCTCTCCCTCCATGACTG 660 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 ATATTTCATTCAAAGCTGAATGTCAAATTGCACACTTCTAAGATTTAAGGCGTGTTTACG 720 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 TTGCTTCACTCTCTTTACCATTTACGCATTGGCATCAGCAGCGAACAAGAGCATCACCAA 780 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 TGGGTTCTGCCAAGGGACCAAGCTGGATTGATGGGTTCGATTATTTCTGAAATTTTCTCT 840 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 ACTTCACTGATTTTCAGGAATTCCGGACCACATTTTGGTCAAAGTTTGAAAAAATCGATC 900 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------------------------------------------ consensus_10921#2 ----------ATCCTTCCCTCTTTCTGTATCCATCCCGCTCTCTCTCTCTCTCGACGAGA 50 consensus_10921#0 AAAATCTGCCATTGGACCACCGATTTTTCATGATTTCTTTTTCTTTTTTTAAAAAAAAGA 960 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ------------------------TCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCC 36 consensus_10921#2 GAGAGAAAGTGCGAAGATATGCTTTCCGTCGCCCGCCGGCCCCTCTCCGCCGCCGTCCCC 110 consensus_10921#0 AAAACAGCGAGTGATCCCTAGAGTGGTTTCCTTAGTCTGCCATTTCCTGCGCATGCATCG 1020 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 GTCGGCAACCTCCTCGGCATCCACCTC--TTCCAATGC-------CCTGACACGGTGGGC 87 consensus_10921#2 GTCGGCAACCTCCTCGGCATCCACCTC--TTCCAATGC-------CCTGACACGGTGGGC 161 consensus_10921#0 ATTGATTGATTTATGGGTGGGTTCCTCATTTTGAATGAATATGAACAGGACACGGTGGGC 1080 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 147 consensus_10921#2 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 221 consensus_10921#0 ATTGTGGCGCGGCTGTCTGAGTGCATCGCCTCGCGTGGTGGCAACATCCACAGTGTCGAT 1140 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 207 consensus_10921#2 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 281 consensus_10921#0 GTCTTTGTCCCTGACGACAAACCCGTCTTCTACTCCCGTAGTGAGTTTACCTACAATCCC 1200 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 267 consensus_10921#2 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 341 consensus_10921#0 ATGCTATGGCCGCGCGATGTGCTTCGCACCGACTTCCTCAATCTGTCACAACACTTCAGC 1260 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 327 consensus_10921#2 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 401 consensus_10921#0 GCACAAAGATCTACTGTTCGAGTCCCTGATCTTGACCCGAAATACAAGATATCTGTACTC 1320 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 387 consensus_10921#2 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 461 consensus_10921#0 GCTTCGAAGCAGGATCATTGTTTGTTTGACTTGCTCTATAGATGGCAAGAGGGAAGGCTT 1380 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 CCGGTTGACATCAATTGTGTCATAAGGTCGATATATCAAATCTGACCGCTCTGCATTTAT 447 consensus_10921#2 CCGGTTGACATCAATTGTGTCATAAG---------------------------------- 487 consensus_10921#0 CCGGTTGACATCAATTGTGTCATAAG---------------------------------- 1406 consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 TCATATCCAATTTCTTCTTGGTCAAAACAAATATGCCATTTTTTTTTCTTTCCTCTGCAG 507 consensus_10921#2 ------------------------------------------------------------ consensus_10921#0 ------------------------------------------------------------ consensus_10921#3 ------------------------------------------------------------ consensus_10921#1 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 567 consensus_10921#2 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 547 consensus_10921#0 CAACCATGATCGACTTAAAGATAACCATGTCAGACGTTTCCTTGAGAGACATGGGATCCC 1466 consensus_10921#3 ---------------------------------------TCCCGTCTTGTATGGACTTCC 21 * * **** * ** consensus_10921#1 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 627 consensus_10921#2 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 607 consensus_10921#0 CTATCATTACCTACCGACAAGCCCAGGAAATAAAAGAGAGCAAGAGATTTTAGAATTGGT 1526 consensus_10921#3 CC-----CACTCATGATCAAACCTGTCAGCTTA-------CCATTTTTTTTGTGACAGAT 69 * ** * *** ** * * * * * **** * * * consensus_10921#1 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 683 consensus_10921#2 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 663 consensus_10921#0 TCAAGGTACCGATTTTGTGGTACTGGCAAGATATAT----GCAGATATTATCTGAAGGCT 1582 consensus_10921#3 ATAATTTGAAGACCCCTGTTAGCTGACCATTTTTTTTGTGACAGATATTATTTGAAGGCT 129 ** * ** *** * * * * * ********** ******** consensus_10921#1 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 743 consensus_10921#2 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 723 consensus_10921#0 TTCTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTA 1642 consensus_10921#3 TTTTCAAGGCTTATGGCAAAGATATTATTAACATCCATCATGGTTTTTTTCCCTCATTTA 189 ** ***************************************** ** ************ consensus_10921#1 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 803 consensus_10921#2 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 783 consensus_10921#0 AGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAGTAAAATTGATCGGCGCAACCA 1702 consensus_10921#3 AGGGAGGGAATCCTTTGAGACAGGCCTTCAACGGTGGAGTAAAATTGATTGGGGCAACCA 249 *************** ***************** *************** ** ******* consensus_10921#1 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 863 consensus_10921#2 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 843 consensus_10921#0 GCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGGG 1762 consensus_10921#3 GCCATTTTGTTTCCCCAGAACTTGATGTTGGCCCAATCATTGAGCAGATGGTTGAACGGG 309 *********** *************** ******************************** consensus_10921#1 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 923 consensus_10921#2 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 903 consensus_10921#0 TGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGT 1822 consensus_10921#3 TGTCCCCCAGAGACACGCTACAGAGCTTTGTGGTGAAATTTGAGAACCTAGAGAAGCAGT 369 ****** ******************************** ******************** consensus_10921#1 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 983 consensus_10921#2 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 963 consensus_10921#0 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTACCATATGAATTGAAGA 1882 consensus_10921#3 GCCTAGCAGAAGCTATAAAGTCGTACTGTGAGCTCCGTGTGCTCCCATATGAATTGAAGA 429 ******************************************* **************** consensus_10921#1 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1043 consensus_10921#2 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1023 consensus_10921#0 AGACAGTAGTGTTCTGATATCTTTTGAAGGAAGCGATTTTGTTTGTTTGTTTTTATTTGT 1942 consensus_10921#3 AGACAGTAGTGTTTTGATATTTTTTGAAGGAAGGGATTTTGTTTGTTTGTTTTTATTTGT 489 ************* ****** ************ ************************** consensus_10921#1 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 1103 consensus_10921#2 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 1083 consensus_10921#0 TGATAAGAGGAAATTACTACAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 2002 consensus_10921#3 TGATAAGAGGAAATTACTCCAGTACAAAATTTTGTGGTGTTGATTGCTTTGGTGATAAGG 549 ****************** ***************************************** consensus_10921#1 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATTC 1163 consensus_10921#2 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 1143 consensus_10921#0 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 2062 consensus_10921#3 AGGTGGGTGTGTGGGCGTGGCTGGACAGTGCATTTTGTAATTGATTGAGTATAACAATAC 609 ********************************************************** * consensus_10921#1 TCCGGAGCAAATAAAATGATAATGCATAATAGTAGTAAAAAAAGAA 1209 consensus_10921#2 TCCAAAGCAAATAAAATGATAATGCATAATAGT------------- 1176 consensus_10921#0 TCCAAAGCAAATAAAATGATAATGCATAATAGTAGT---------- 2098 consensus_10921#3 TCCAAAGCAAATAAAATGATAATGCAT------------------- 636 *** ********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||