cluster # 10923

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Oryza sativa
cluster # 10923 cluster # 10923 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10923#0 length = 933 sequences # 7

consensus_10923#1 length = 508 sequences # 1

consensusID : consensus_10923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 933
fasta sequence

                              [TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCGCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGAT-GAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA-GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT-GGGACAT-CCGAG-CGACA-CCGACGTTCTT-CTT-CCT-AAAGAAC-GGGGAGCAGG-TGGACAAGCTCGTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT----GTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC--TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA-TTA-TTGCCTGATT-TTACCCTGGTGAAAAAAAATCCGATGTATGTTGAGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA]

[+] EMBL AK103756             [TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCGCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGAT GAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT GGGACAT CCGAG CGACA CCGACGTTCTT CTT CCT AAAGAAC GGGGAGCAGG TGGACAAGCTCGTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT    GTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTGTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGATTAGTGATCCGATGTATGTTGAGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCA                ]
[+] EMBL C72705               [                                                        cngnCGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGNTNGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCA GTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGGACATCCCGAGCCGACACCCGACGTTCTTCCTTNCCTAAAAGACCGGGGGAGCAGGTTGGACAAGCTCGTCGGCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA763751             [                                                                                                                                                                                                                                                    aggtgagcCAGACG AGACAAGGGGGGGAAAATTGTGATTGCAAATTTCAGTGCTGCATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCCCCACGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCAT TGGACAT TCGAG CGACA CCGACGTTCTT CTT CCT AAAGAAC GGGGAGCAGG TGGACAAGCTTGTTGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAAGCTGTATATCCGTTTTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC  TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGATTAGTGATCCGATGTATGTTGGGTGTGAACTGATACAGAACAATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATTTGCCATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA]
[+] EMBL BI803068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC  TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTACCTACTTGCCTGATTCTTAACCTGGTGGAAAAAAA                                                                                                                                      ]
[+] EMBL BI804189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC  TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTACCCTGGTGAAAAAAAA                                                                                                                                      ]
[+] EMBL BI804075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC  TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTA CCTGGTGAAAAAAAA                                                                                                                                      ]
[+] EMBL BI804419             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGAC  TACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTA TTA TTGCCTGATT TTA CCTGGTGAAAAAAAA                                                                                                                                      ]




>consensus_10923#0
TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCG
CGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAG
TTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGATGAAGA
AGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGA
CCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGC
ATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCC
CCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGA
CATCCGAGCGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGT
CGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGAGG
CAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGT
TCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATGTTCTGCTGAGGTGTTT
CTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAGTATCTT
TTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGCCTGATT
TTACCCTGGTGAAAAAAAATCCGATGTATGTTGAGTGTGAACTGATACAGAACAATAGGG
AAATATTTTTACTGTAATATTGACAAATGCCAGGAATGGCTACCAATCTGCCATGAATCC
ATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA

consensusID : consensus_10923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [AAACATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGCCTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCATGATTCTAGTATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGATATGATGTGGGCTTGGTCGGCCAGTAAAAAA]

[+] EMBL BI813766             [AAACATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTCGTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGCCGCGCTTGCTGACAGCGCCTGAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGCCTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCATGATTCTAGTATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGATATGATGTGGGCTTGGTCGGCCAGTAAAAAA]




>consensus_10923#1
AAACATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAG
CTCGTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTGCCGCGCTTGCTGACAGCGCCT
GAGGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCA
GAGTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTG
AGGTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAA
AGTATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATT
GCCTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCATGATTCTAGTAT
CTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGATAT
GATGTGGGCTTGGTCGGCCAGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10923#0      TAACCGGAAGCTCACGGCTTATACAGGAGCAACTTCCCCCAAAACTCTTGCCAGTTCGCG 60
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      CGGCTTCAGGCTTTCTTTGGCGCCAAATCCGCCGCCCAATCCCAGTTTTCCCAAGGGTAG 120
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      TTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGGAACGCAGTGATGAAGA 180
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      AGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGA 240
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      CCACAAAATTGCAGAGGCAAACAAGGATGGGAAAATTGTGATTGCAAATTTCAGTGCTGC 300
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      ATGGTGTGGACCATGCCGTGTCATTGCACCTGTATATGCTGAGATGTCACAGACATACCC 360
consensus_10923#1      ------------------------------------------------------------
                                                                                   

consensus_10923#0      CCAGTTCATGTTCTTGACTATAGATGTCGACGAGTTAATGGACTTCAGCTCATCATGGGA 420
consensus_10923#1      ---------------------------------------------------------AAA 3
                                                                                  *

consensus_10923#0      CATCC-GAGC-GACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTC 478
consensus_10923#1      CATCCCGAGCTGACACCGACGTTCTTCTTCCTAAAGAACGGGGAGCAGGTGGACAAGCTC 63
                       ***** **** *************************************************

consensus_10923#0      GTCGGCGCCAACAAGCCGGAGCTGGAGAAGAAAGTGGCCGCGCTTGCTGACAGCGCCTGA 538
consensus_10923#1      GTCGGCGCCAACAAGCCAGAGCTGGAGAAGAAAGTG-CCGCGCTTGCTGACAGCGCCTGA 122
                       ***************** ****************** ***********************

consensus_10923#0      GGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGA 598
consensus_10923#1      GGCAAATTAAGCCAGTGACAATCAGACATTATTGTCAGGAACCCCAAAGTTCAGTTCAGA 182
                       ************************************************************

consensus_10923#0      GTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTAT----GTTCTGCTGAG 654
consensus_10923#1      GTTCAGACGTTGCCAGCAAATATCAATTATCATCAGAGGCTGTATATCCGTTCTGCTGAG 242
                       *********************************************    ***********

consensus_10923#0      GTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAG 714
consensus_10923#1      GTGTTTCTTCAGACTTGGTTCTGTATATCCGTCATGAGACTACAGTCCCCGGGTATAAAG 302
                       ************************************************************

consensus_10923#0      TATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGC 774
consensus_10923#1      TATCTTTTTTTCTCCTGTTAAAATCACACTTTTGACATGCCATTTTGGCACTATTATTGC 362
                       ************************************************************

consensus_10923#0      CTGATTTTACCCTGGTGAAAAA-AAATCCGATGTATGTTGAGTGTGAACTGATACAGAAC 833
consensus_10923#1      CTGACTGGCTACCAATCTGCCATGAATCCATGATTTATGGAGTTCA---TGATTCT-AGT 418
                       **** *     *   *     *  *****    * * * ****      **** *  *  

consensus_10923#0      AATAGGGAAATATTTTTACTGTAATATTGACAAATGCCAG-GAATGGCTACCAATCTGCC 892
consensus_10923#1      ATCTGATGGGCCTTTTTAGCGAGTGGGCCGAATGTATCACCGCACAGCTGCTCTTTGGAT 478
                       *   *       ******  *          *  *  **  * *  *** *   *  *  

consensus_10923#0      ATGAATCCATGATTTATGGAGTTCAAAAAAAAAAAAAAAAA 933
consensus_10923#1      ATGA---TGTGGGCTTGGTCGGCCAGTAAAAAA-------- 508
                       ****     **   *  *  *  **  ******