These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 662 fasta sequence [AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC-GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC-GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG-CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAAC-TACCACAGTGGTGCTTCTTGCT-GCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGATACATCCGCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAGATTGGCCAATTAGCATTGAAGGGAAAAGCCTTGAGGAAAAGAAGGAATTGCNTAGCCAAGTGTGTGAACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCNTCTATG] [+] EMBL CF305964 [AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GTTTAT AACTTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCTCTCTTGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACAT ] [+] EMBL C72536 [ AACCCTCGCTGCTCTCCTCCCCCTCCCNGTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACANGGTGCGNACCACGTTTGGGGCCACG ] [+] EMBL C26445 [ CCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTNCAACGACGGCGCCACCATCATGCGCCTNCTCGACATCATCCACCCCGTCGCCAAGATCCTCGTCGAC ] [+] EMBL C27094 [ GCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACAGTGGTGGCGGACACGGTGCGCANCACG CTGGGGCCACGCGGCATGGACAAGCTCATNCACGACGACAAGGGCGGCACCACCATCTTCAACGACGGCGNCACCATCATGCGCTTCTTCGACA ] [+] EMBL AU222812 [ GCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACCTGCGAGCTCCTCGCCATGGCGTCCATGATGCAACCTGCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAAC TACCACAGTGGTGCTTCTTGCT GCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACG ] [+] EMBL CF305690 [ TGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGCCACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCA ] [+] EMBL AU056199 [ TCTCCATCTCCCCGCCACCAAATCCCCCCGAAACC GCGAGCTCCTCGCCATGGCGTCCATGATGCAACC GCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGGGCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCACCACG CTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCATCTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAACTTACCACAGTGGTGCTTCTTGCTGGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGATACATCCGCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAGATTGGCCAATTAGCATTGAAGGGAAAAGCCTTGAGGAAAAGAAGGAATTGCNTAGCCAAGTGTGTGAACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCNTCTATG] consensusID : consensus_10924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CAGTGGTGCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCCGNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAAGGTCAAAGACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCTAGCCAAGTGTGCTGCAACAACACTCTCATCAAAGTTGATA] [+] EMBL OSS0947A [CAGTGGTGCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCCGNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAAGGTCAAAGACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCTAGCCAAGTGTGCTGCAACAACACTCTCATCAAAGTTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10924#0 AGGGAGCGATCGAGAAAAACCCTCGCTGCTCTCCTCCCCCTCCCCCTCCCCCTCCGCCGC 60 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 CACCTCAGATCTCCATCTCCCCGCCACCAAATCCCCCCGAAACCGCGAGCTCCTCGCCAT 120 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 GGCGTCCATGATGCAACCGCAGATCATCCTGCTGAAGGAGGGGACGGACACGTCGCAGGG 180 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 GCGCGCGCAGGTGGTGAGCAACATCAACGCGTGCACGGTGGTGGCGGACACGGTGCGCAC 240 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 CACGCTGGGGCCACGCGGCATGGACAAGCTCATCCACGACGACAAGGGCGGCACCACCAT 300 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 CTCCAACGACGGCGCCACCATCATGCGCCTCCTCGACATCATCCACCCCGCCGCCAAGAT 360 consensus_10924#1 ------------------------------------------------------------ consensus_10924#0 CCTCGTCGACATCGCCAAGTCCCAGGACTCCGAGGTTGGTGATGGAACTACCACAGTGGT 420 consensus_10924#1 -----------------------------------------------------CAGTGGT 7 ******* consensus_10924#0 GCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTGAGGACGGA-TACATCC 479 consensus_10924#1 GCTTCTTGCTGCTGAGTTCCTGAAAGAAGCAAAACCTTACATTNAGGNCGGAGTACATCC 67 ******************************************* *** **** ******* consensus_10924#0 GCATAGTCTAATTCGCAGTTATAGGACTGCTGGNCATTTGGNAATTTGAAAAGGTCAAAG 539 consensus_10924#1 GNATAGGCTAATTCGCAGTTATAGGGCTGCTTGCCNNTTGGCAATTNNAAA-GGTCAAAG 126 * **** ****************** ***** * * **** **** *** ******** consensus_10924#0 ATTGGCCAATTAGCATTGAAGGGAAAAGCCTT-GAGGAAAAGAAGGAATTGCNTAGCCAA 598 consensus_10924#1 ACTTTGNCACTAGCATTTAAGGGAAAAGCCTTTNAGGAAAAGAAGGAATTGCT-AGCCAA 185 * * * ******* ************** ****************** ****** consensus_10924#0 GTGTGTG--AACAAAANTCTCATCAAAAGTTGAAANGGTGGCGAGAAAGAATTTTTTGCN 656 consensus_10924#1 GTGTGCTGCAACAACACTCTCATCAAA-GTTGATA------------------------- 219 ***** ***** * ********** ***** * consensus_10924#0 TCTATG 662 consensus_10924#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||