These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 813 fasta sequence [TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC] [+] EMBL CB649549 [TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC] [+] EMBL CB649752 [ CCAGGTGACTACATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCATCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCTTCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGGATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTATGCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGAC ] consensusID : consensus_10927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 655 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA-CTAC-ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC-GGTGACACC-AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA-CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG-CGACGCCT-GCACG-ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA-GCATCCACCAACCAGGTTCA-----ACCCGTGA-GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTT-GATGCACCCATCAATCCATCA-GGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT] [-] EMBL C97322 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTGACGACGCCTGGCACGTATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGAGGCATCCACCAACCAGGTTCA ACCCGTGAGGGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGGATGCACCCATCAATCCATCAGGGNAAACCACCATT ] [-] EMBL BM419183 [ TTTTTTTTTTGAGCTACGNTATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TGTTTTGAAGATGCTGACNCGGGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATcgg ] [-] EMBL BQ908349 [ TTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TG TTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATA TGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCAACATTACCCGTGA GGCAATCATCGAGTTTG TGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTGGGCCCTGTGGAA ] [-] EMBL BQ908353 [ TTTTTTGA CTAC ATATACAGTTTGAAATTACGATATAAGAAAAGGGACTG TG TTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCAACATTACCCGTGA GGCAATCATC ] [+] EMBL CB638492 [ TACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACAC GGTGACACC AACACACACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGGAACACAGTGGAAGACCAA CCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCA ACCCGTGA GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTT GATGCACCCATCAATCCATCA GGCAAA ] [-] EMBL CA765233 [ ACAGTTTGAAATTACGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGGCAC GGTGACACCAAACACATACGAACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATAGAACACAGTGGAAGACCAACCCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAGGACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGCATATCTGAGATCCTTG CGACGCCT GCACG ATCAGCATGCTAGGATGTGAGTAATACTTCCACTGTGTACTCGA GCATCCACCAACCAGGTTCA ACCCGTGA GGCAATCATCGAGTTTGTTGGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCATCACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTCGGAGGCGCCGTT GATGCACCCATCAATCCATCA GGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCCTCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10927#0 ----------TCCTTTTTTTTATACAACATCCAGGTGACTACATATACAGTTTGAAATTA 50 consensus_10927#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTACATATACAGTTTGAAATTA 60 * ******** * * ************************* consensus_10927#0 CGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACG 110 consensus_10927#1 CGATATAAGAAAAGGGACTGTTGTTTTGAAGATGCTGACACGGTGACACCAACACACACG 120 ************************************************************ consensus_10927#0 AACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGG 170 consensus_10927#1 AACACATATTGTTGTTTTCAAATTTCAAACATGCCATCTGCAAGATTGGAAGTGAAATGG 180 ************************************************************ consensus_10927#0 AACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAG 230 consensus_10927#1 AACACAGTGGAAGACCAACCACATTACTCTCCCAATTACTCTCCTAACAACTCAAAGAAG 240 ************************************************************ consensus_10927#0 GACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGC 290 consensus_10927#1 GACCAAAGAAAGCTGCTATCATGCGTGACCAACCAACTAAATGGAAAACGCAGATGCAGC 300 ************************************************************ consensus_10927#0 ATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCC 350 consensus_10927#1 ATATCTGAGATCCTTGCGACGCCTGCACGATCAGCATGCTAGGATGTGAGTAATACTTCC 360 ************************************************************ consensus_10927#0 ACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTT 410 consensus_10927#1 ACTGTGTACTCGAGCATCCACCAACCAGGTTCAACCCGTGAGGCAATCATCGAGTTTGTT 420 ************************************************************ consensus_10927#0 GGCTAAAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCAT 470 consensus_10927#1 GGCTAGAAGAGTTAGGGTTGTACAGCACAGAGTAATCAATATAGGGGGACTGCAAATCAT 480 ***** ****************************************************** consensus_10927#0 CACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCA 530 consensus_10927#1 CACGAGAGCTCGATGCATTTTGGCCCTGTGGAAAACTTGGAGGCGCCGTTGATGCACCCA 540 ************************************************************ consensus_10927#0 TCAATCCATCAGGCAAACCACCATTTGACATCATTTTCTGCATGGCGCTCACTGTATTCC 590 consensus_10927#1 TCAATCCATCAGGCAAACCACCATTTGACATCGTTTTCTGCATGGCGCTCACTGTATTCC 600 ******************************** *************************** consensus_10927#0 TCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCATCTTCT 650 consensus_10927#1 TCATGTTAGCCAAATCCTCCTGCAGCTTTTTCTGACTTTCCTCCATTACCATCAT----- 655 ******************************************************* consensus_10927#0 TCCTCAGTGTGGCAGCCTCATTTTCAGCAATCTCTTTTGCATCCACAGCTTCCTTGAAGG 710 consensus_10927#1 ------------------------------------------------------------ consensus_10927#0 ATGCCTTAAGGGCTGCCTTTTCCTTCAGGCCACTAGGGCTGGCCCCAGGTTCATGGTTAT 770 consensus_10927#1 ------------------------------------------------------------ consensus_10927#0 GCATCCTACCCCTCCTCTTTTCACCCATGGCTGTGACATCATC 813 consensus_10927#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||