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Oryza sativa
cluster # 10934 cluster # 10934       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10934#0 length = 1240 sequences # 5  
consensus_10934#1 length = 854 sequences # 1  
consensus_10934#2 length = 803 sequences # 1  
consensus_10934#3 length = 608 sequences # 1  

consensusID : consensus_10934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1240
fasta sequence
                              [TGATGAGGCTGGGAAGGGCGCCCTGCTGCTACTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTT--------GGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTATGGATATGCTGAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTATAAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTAGTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCATATATTAAACGTTTAAGTGTACGTTCCGGAGGTGGGATAATGATATTTAACAAAAAGGGA]

[+] EMBL AK071607             [TGATGAGGCTGGGAAGGGCGCCCTGCTGCTACTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCCGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTT        GGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTATGGATATGCTGAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTATAAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTAGTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCATATA                                                        ]
[+] EMBL AK060075             [                               CTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGCTTTCTAGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTATGGATATGCTGAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTATAAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTAGTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCATATATTAAAC                                                  ]
[+] EMBL CB680663             [                                                                CGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGCTTTCTAGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF196516             [                                                                                                                                                                                                                                                                  GGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTT        GGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGANNNNCAACAGAGTATCTTTTGTATGGATATGCTNNNNNNNNACTAGCTGAC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB680664             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTATGGATATGCTGAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGTTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATTTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGCCTATAAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTAGTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCATATATTAACCGTTTAAGTGTACGTTCCGGAGGTGGGATAATGATATTTAACAAAAAGGGA]


>consensus_10934#0 TGATGAGGCTGGGAAGGGCGCCCTGCTGCTACTGCTTCACCGAGCCGCACCCCGCCGGCG GCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCT CAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGG GGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCC GGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGT TAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTG AGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGC TTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATT TGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTA GCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATT TGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGTTTAGATACATTCATAAAAAAGG GCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCA ATTCAGGCAAACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAG TAGCAACAGAGTATCTTTTGTATGGATATGCTGAAGGAGGACTAGCTGACATTGGGCAAC TAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGAT GGGCTGTGCTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCG CGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATA TAAACTCTGAGGATATTTAGTTAGTGACTATAAAGATGATGGAAAATATAGATCACATAT GTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTAGTCTGTTAGC AGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCATATATTAAACGTTTAAGTGT ACGTTCCGGAGGTGGGATAATGATATTTAACAAAAAGGGA



consensusID : consensus_10934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 854
fasta sequence
                              [TGCTACTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTTGGCTTTTGTTGTCATGTAATATTTGTCCTGATGTTGTCTCGCGATTATTAGCAGCTGTGATGATGATGCATTCACCCGCTCTGCTTTCGTTCTTAGATTGGAGCATTTTTATGTGCATCTTAAACTGATTTGGCAAAGAATTCATGAGCCGAGAGGGCGATAGGATATATTTAGTGCTGATTTCAACTAATGCTATTCATAATTTTGCCTAAATAAAATGAAGCTTTAGCCTTTTCCTTTTCTCTACATTTTGATCTTGGTAGTCTTTTTTTTTTCTACTGAAATCTATATCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGGTTAGTTACATCATAATGATTCTTTCCNATCATCTAATAAATTTTCATCATTATATGGCCTTTTAGATCATCGACTTTATGACTTGTAGCTGGTGATCTAC]

[+] EMBL CB658426             [TGCTACTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTTGGCTTTTGTTGTCATGTAATATTTGTCCTGATGTTGTCTCGCGATTATTAGCAGCTGTGATGATGATGCATTCACCCGCTCTGCTTTCGTTCTTAGATTGGAGCATTTTTATGTGCATCTTAAACTGATTTGGCAAAGAATTCATGAGCCGAGAGGGCGATAGGATATATTTAGTGCTGATTTCAACTAATGCTATTCATAATTTTGCCTAAATAAAATGAAGCTTTAGCCTTTTCCTTTTCTCTACATTTTGATCTTGGTAGTCTTTTTTTTTTCTACTGAAATCTATATCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGGTTAGTTACATCATAATGATTCTTTCCNATCATCTAATAAATTTTCATCATTATATGGCCTTTTAGATCATCGACTTTATGACTTGTAGCTGGTGATCTAC]


>consensus_10934#1 TGCTACTGCTTCACCGAGCCGCACCCCGCCGGCGGCGTCGCGGCCGCCGTCAGGCTGCGA CTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCTCAGAGCCGGCGGCGCGGCTGAGGGCG GTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGGGGAACGACGAGGCCGCGCTGTCCCTC GTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGGTTCTTTGGCGCGGCGAGGCAGGTT GGCTTTTGTTGTCATGTAATATTTGTCCTGATGTTGTCTCGCGATTATTAGCAGCTGTGA TGATGATGCATTCACCCGCTCTGCTTTCGTTCTTAGATTGGAGCATTTTTATGTGCATCT TAAACTGATTTGGCAAAGAATTCATGAGCCGAGAGGGCGATAGGATATATTTAGTGCTGA TTTCAACTAATGCTATTCATAATTTTGCCTAAATAAAATGAAGCTTTAGCCTTTTCCTTT TCTCTACATTTTGATCTTGGTAGTCTTTTTTTTTTCTACTGAAATCTATATCAGGTACCT CAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTA TCTCCTGTTGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTA GGAGGGCTCTCTGTATCAGCTGCATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTT TTGGGTCTACTATCTCTGTGGTCGGTGGATTTGGTTAGTTACATCATAATGATTCTTTCC NATCATCTAATAAATTTTCATCATTATATGGCCTTTTAGATCATCGACTTTATGACTTGT AGCTGGTGATCTAC



consensusID : consensus_10934#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence
                              [AGGACGAGACAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGATTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTAGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTTGAGCTTTCTCAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGCTTTCTAGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACAGTATCACAAGTTTAGATACATTCATAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGATTTGTGAAGTGTATGATGCACAATCTTGTGACTCGCTGTTGCTGTTACTCTGGTCAAAGGCTTTCTTCAGACAACCCCTCTATCGACTAGTTTGTCATGGATGTACAAAAATGGTGAANGGTAATTGNTAGAGATATTAGCTATTCTAGCAAAACCAGAGTCACAGTCTGAAAGCAGNGTACTGATAAGAACCAGCATTACCTATCCTTTTTTCTCCATTCTCTTTTGNCCATAATAAAGGATGG]

[+] EMBL CA766721             [AGGACGAGACAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCCGATTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTAGATCTGACTTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCTGCATTTGAGCTTTCTCAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGTGGTCGGTGGATTTGCTTTCTAGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTTGATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCTGGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACAGTATCACAAGTTTAGATACATTCATAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGATTTGTGAAGTGTATGATGCACAATCTTGTGACTCGCTGTTGCTGTTACTCTGGTCAAAGGCTTTCTTCAGACAACCCCTCTATCGACTAGTTTGTCATGGATGTACAAAAATGGTGAANGGTAATTGNTAGAGATATTAGCTATTCTAGCAAAACCAGAGTCACAGTCTGAAAGCAGNGTACTGATAAGAACCAGCATTACCTATCCTTTTTTCTCCATTCTCTTTTGNCCATAATAAAGGATGG]


>consensus_10934#2 AGGACGAGACAAGGGGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGC GGATGGCGGGCTCCGATTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATT GGATGAGCTGAAGTTAAATGGGATCGATACTTCTGCTTTCCTATCTCCTGTAGATCTGAC TTTGGGATCAATTGAGAGAAATCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATC AGCTGCATTTGAGCTTTCTCAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCT GTGGTCGGTGGATTTGCTTTCTAGGTATATTTCGGTGGTGGAGTGAGAAACTTGATTCTT GATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCT GGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACAGTATCACAAGT TTAGATACATTCATAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACT TTGAGTTCCTTCAAGAGATTTGTGAAGTGTATGATGCACAATCTTGTGACTCGCTGTTGC TGTTACTCTGGTCAAAGGCTTTCTTCAGACAACCCCTCTATCGACTAGTTTGTCATGGAT GTACAAAAATGGTGAANGGTAATTGNTAGAGATATTAGCTATTCTAGCAAAACCAGAGTC ACAGTCTGAAAGCAGNGTACTGATAAGAACCAGCATTACCTATCCTTTTTTCTCCATTCT CTTTTGNCCATAATAAAGGATGG



consensusID : consensus_10934#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [GGGATTTTTTNTTTCCTTTTGGGAATNAGTTTGTGATGACACAGTTGACTTNTACGGTGGGATTTTAAGGCAAGATGTTTGACAANAGTTTTCNANACNTGCCCCTGGCTCGGGGTTGTCCCCCCCAGGGTTTTCTTTGTAAGGTATATCTGAGCGGGTACTAGCTCATGGGNCAAATATGTNAGCCATGGGTAGTCGACAGACCTGAATTTTGATACCCCTTGGGGAACCACATCAACATNGTTTATTTTAGGCGTCCTTTTTTTTTTTTTTGCAATTACAGCTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACTTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTCTGTGACTATAAAGATGAGATGATGGAACATATAGATCACANATGTACAAACTTTTAGCTATGTATTTGGACATACTCAGATAAGCCNGAAGTTAATGGGAGCTTAAAAAAAAAA]

[+] EMBL BM419689             [GGGATTTTTTNTTTCCTTTTGGGAATNAGTTTGTGATGACACAGTTGACTTNTACGGTGGGATTTTAAGGCAAGATGTTTGACAANAGTTTTCNANACNTGCCCCTGGCTCGGGGTTGTCCCCCCCAGGGTTTTCTTTGTAAGGTATATCTGAGCGGGTACTAGCTCATGGGNCAAATATGTNAGCCATGGGTAGTCGACAGACCTGAATTTTGATACCCCTTGGGGAACCACATCAACATNGTTTATTTTAGGCGTCCTTTTTTTTTTTTTTGCAATTACAGCTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACTTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTCTGTGACTATAAAGATGAGATGATGGAACATATAGATCACANATGTACAAACTTTTAGCTATGTATTTGGACATACTCAGATAAGCCNGAAGTTAATGGGAGCTTAAAAAAAAAA]


>consensus_10934#3 GGGATTTTTTNTTTCCTTTTGGGAATNAGTTTGTGATGACACAGTTGACTTNTACGGTGG GATTTTAAGGCAAGATGTTTGACAANAGTTTTCNANACNTGCCCCTGGCTCGGGGTTGTC CCCCCCAGGGTTTTCTTTGTAAGGTATATCTGAGCGGGTACTAGCTCATGGGNCAAATAT GTNAGCCATGGGTAGTCGACAGACCTGAATTTTGATACCCCTTGGGGAACCACATCAACA TNGTTTATTTTAGGCGTCCTTTTTTTTTTTTTTGCAATTACAGCTAGATGGATTGCTCAA AGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATAC TGTACTTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTC TGGGAAGTCAGTTGGATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATAT TTAGTTAGTGACTCTGTGACTATAAAGATGAGATGATGGAACATATAGATCACANATGTA CAAACTTTTAGCTATGTATTTGGACATACTCAGATAAGCCNGAAGTTAATGGGAGCTTAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10934#0      TGATGAGGCTGGGAAGGGCGCCCTGCTGCTACTGCTTCACCGAGCCGCACCCCGCCGGCG 60
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      --------------------------TGCTACTGCTTCACCGAGCCGCACCCCGCCGGCG 34
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      GCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCT 120
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      GCGTCGCGGCCGCCGTCAGGCTGCGACTGCTGCCGCCTGCCCGCGCCGCGAATACCTCCT 94
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      CAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGG 180
consensus_10934#2      ----------------------------------------------AGGACGAGACAAGG 14
consensus_10934#1      CAGAGCCGGCGGCGCGGCTGAGGGCGGTTCTCGAGCAGGTGGACGAGGAGCTGCGGAAGG 154
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      GGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCC 240
consensus_10934#2      GGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCC 74
consensus_10934#1      GGAACGACGAGGCCGCGCTGTCCCTCGTGCGCGGCTCGCAGGGGGCGGATGGCGGGCTCC 214
consensus_10934#3      --------GGGATTTTTTNTTTCCTTTTGGGAATNAGTTTGTGATGACACAGTTGACTTN 52
                               * *         * ***  ** *         * *     *  *  * **  

consensus_10934#0      GGTTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGT 300
consensus_10934#2      GATTCTTTGGCGCGGCGAGGCAGGTACCTCAAAGACTTTATACATTGGATGAGCTGAAGT 134
consensus_10934#1      GGTTCTTTGGCGCGGCGAGGCAGGTTGGCTTTTGTTGTCATGTAATATTTGTCCTGATGT 274
consensus_10934#3      --TACGGTGGGATTTTAAGGCAAGATGTTTGACAANAGTTTTCNANACNTGCCCC----- 105
                         * *  ***       ***** *                *        **  *      

consensus_10934#0      TAAATGG-GATCGATA----CTTCTGCTTTCCTATCTCCTGTTGATCTGACTTTGGGATC 355
consensus_10934#2      TAAATGG-GATCGATA----CTTCTGCTTTCCTATCTCCTGTAGATCTGACTTTGGGATC 189
consensus_10934#1      TGTCTCGCGATTATTAGCAGCTGTGATGATGATGCATTCACCCGCTCTGCTTTCGTTCTT 334
consensus_10934#3      TGGCTCGGGGTTGTCCCC--CCCAGGGTTTTCTTTGTAAGGTATATCTGAGCGGGTACTA 163
                       *   * * * *         *        *  *   *        ****     *   * 

consensus_10934#0      AATTGAGAGAAATCTC-----CAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCT 410
consensus_10934#2      AATTGAGAGAAATCTC-----CAAATTGCTGCAGTTCTAGGAGGGCTCTCTGTATCAGCT 244
consensus_10934#1      AGATTGGAGCATTTTTATGTGCATCTTAAACTGATTTGGCAAAGAATTCATGAGCCGAGA 394
consensus_10934#3      GCTCATGGGNCAAATA------TGTNAGCCATGGGTAGTCGACAGACCTGAATTTTGATA 217
                             * *     *                    *     *                  

consensus_10934#0      G--CATTCGAGCTTTCTAAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGT 468
consensus_10934#2      G--CATTTGAGCTTTCTCAACTCCAAGTTCTGTTTCTGTTTTTGGGTCTACTATCTCTGT 302
consensus_10934#1      GGGCGATAGGATATATTTAGTGCTGATTTCAACTAATGCTATTCATAATTTTGCCTAAAT 454
consensus_10934#3      C--CCCTTGGGGAACCACATCAACATNGTTTATTTTAGGCGTCCTTTTTTTTTTTTTTGC 275
                          *  * *         *         *    *   *   *      *  *   *    

consensus_10934#0      GGTCGGTGGATTT-G--------GTATATTTCGGTGGTGGAGTGA-GAAACTTGATTCTT 518
consensus_10934#2      GGTCGGTGGATTT-GCTTTCTAGGTATATTTCGGTGGTGGAGTGA-GAAACTTGATTCTT 360
consensus_10934#1      AAAATGAAGCTTTAGCCTTTTCCTTTTCTCTACATTTTGATCTTG-GTAGTCTTTTTTTT 513
consensus_10934#3      AATTACAGCTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCAC 335
                                     *             * *   *           * *   *  **   

consensus_10934#0      GATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCT 578
consensus_10934#2      GATACAATTGGTCACAATCTTAGCCAGAAGTATCGTAATAGAGTTATTCAGCACGAAGCT 420
consensus_10934#1      --TTCTACTGA----AATCTATATCAG--GTACCTCAAAGACTTTAT---ACATTGGATG 562
consensus_10934#3      AGGTGAGATGG------GCTGTGCTGA--ATACTGTACTTGCACTGCGTCGCCATAAAAA 387
                               **        **          **    *       *      *        

consensus_10934#0      GGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACACTATCACAAGT 638
consensus_10934#2      GGCCACTTCTTGATAGCGTATTTGCTTGGGGTCCTTCCCAAAGGATACAGTATCACAAGT 480
consensus_10934#1      AGCTGAAGTTAAATGGGATCGATACTTCTG--CTTTCCTATCTCCTGTTG-ATCTGACTT 619
consensus_10934#3      GGCCAGATC---ACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGGATCTTGCAT 444
                        **         *  *                * *                ***     *

consensus_10934#0      TTAGATACATTCATAAAAAAGGGCTCACTGAATG--TGCAAG-CTGGGACAGCTTTTGTT 695
consensus_10934#2      TTAGATACATTCATAAAAA-GGGCTCACTGAATG--TGCAAG-CTGGGACAGCTTTTGTT 536
consensus_10934#1      TGGGATCAATTGAGAGAAA-----TCTCCAAATTGCTGCAGTTCTAGGAGGGCTCTCTGT 674
consensus_10934#3      CGGGGT-CATAGAAGAGAATATAAACTCTGAGGATATTTAGT--TAGTGACTCTGTGACT 501
                          * *  **  *    **      * *  *     *  *    * *     ** *   *

consensus_10934#0      GACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAAACTATCTGCCACGATGTTG-AACAA 754
consensus_10934#2      GACTTTGAGTTCCTTCAAGAG----ATTTGTGAAGTGTATGATGCACAATCTTGTGACTC 592
consensus_10934#1      A---TCAGCTGCATTCGAGC------TTTCTAAACTCCAAGTTCTGT--TTCTGTTTTTG 723
consensus_10934#3      A--TAAAGATGAGATGATGGA----ACATATAGATCACANA-TGTACAAACTTTTAGCTA 554
                                *    *   *              *    *             *       

consensus_10934#0      GTTCTCATGCATTGCCTTGGCTGGAG--TAGCAACAGAGTATCTTTTGTATGGATATGCT 812
consensus_10934#2      GCTGTTGC-TGTTACTCTGGTCAAAGGCTTTCTTCAGA-CAACCCCTCTATCGACTAGTT 650
consensus_10934#1      GGT-CTAC-TATCTCTGTGGTCGGTGGATTTGGTTAGT---TACATCATAATGATT--CT 776
consensus_10934#3      TGTATTTGGACATACTCAGAT--AAGCCNGAAGTTAATGGGAGCTTAAAAAAAAAA---- 608
                         *           *   *      *         *             *   *      

consensus_10934#0      GAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACC 872
consensus_10934#2      TGTCATGGATGTACAAAAAT--GGTGA--ANGGTAATTGNT-AGAGATATTAGCT--ATT 703
consensus_10934#1      TTCCNATCATCTAATAAATTTTCATCATTATATGGCCTTTT--AGATCATCGACTTTATG 834
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      -CAGAAGAAAGCTGATTCACAGGTGAGATGGGCTGTGCTGAATACTGTACCTGCACTGCG 931
consensus_10934#2      -CTAGCAAAACCAGAGTCACAGTCTGAAAGCAGNGTACTGATAA--GAACCAGCATTACC 760
consensus_10934#1      ACTTGTAGCTGGTGATCTAC---------------------------------------- 854
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      TCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAATGTCCTCTGGGAAGTCAGTTGG 991
consensus_10934#2      TATCCTTTTT---TCTCCATTCT--CTTTTGNCCATAATAAAGGATGG------------ 803
consensus_10934#1      ------------------------------------------------------------
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      ATCTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGACTAT 1051
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      ------------------------------------------------------------
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      AAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTT 1111
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      ------------------------------------------------------------
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      AACTTGGGCTTTGTATTTAGTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTAT 1171
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      ------------------------------------------------------------
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      TCAGTTTCATATATTAAACGTTTAAGTGTACGTTCCGGAGGTGGGATAATGATATTTAAC 1231
consensus_10934#2      ------------------------------------------------------------
consensus_10934#1      ------------------------------------------------------------
consensus_10934#3      ------------------------------------------------------------
                                                                                   

consensus_10934#0      AAAAAGGGA 1240
consensus_10934#2      ---------
consensus_10934#1      ---------
consensus_10934#3      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)