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Oryza sativa
cluster # 10936 cluster # 10936       Sequences # 8       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10936#0 length = 1396 sequences # 3  
consensus_10936#1 length = 631 sequences # 1  
consensus_10936#2 length = 589 sequences # 1  
consensus_10936#3 length = 560 sequences # 1  
consensus_10936#4 length = 491 sequences # 1  
consensus_10936#5 length = 366 sequences # 1  

consensusID : consensus_10936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1396
fasta sequence
                              [TCCCACCACCATGGCTGCTGCACCTGCACGGCTCGTCGTCCTTGTCCTCGTGGCGGTCGTCGTCGTCGTCGGCGGCGACGGCGACGCCGGCGTCATCCGGCAGGTGACGGACGGCGGGTACTGGCCGCCGGGGCTGCTCCCGGAGGCCCAGTTCGCGGCGTTCGTGCGGCGGCACGGGCGGGAGTACTCCGGGCCGGAGGAGTACGCGCGGCGGCTGCGCGTGTTCGCCGCCAACCTCGCCCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTCCGACCTCACCCGGGAGGAGTTCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTTGGCGACGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGGCCTCCCCGCCAGCTTCGACTGGCGTGACAGGGGCGCCGTGACCGACGTCAAGATGCAGGGCGCGTGCGGCTCCTGCTGGGCCTTCAGCACCACCGGCGCCGTCGAGGGCGCCAACTTCCTCGCCACCGGCAACCTCCTCGACCTCAGCGAGCAGCAGCTCGTCGACTGCGACCACACGTGCGACGCGGAGAAGAAGACGGAGTGCGACAGCGGGTGCGGCGGCGGGCTGATGACGAACGCCTACGCCTACCTGATGAGCTCGGGGGGGCTGATGGAGCAGAGCGCGTACCCATACACGGGCGCGCAGGGGACGTGCCGGTTCGACGCCAACCGGGTCGCCGTCCGCGTCGCCAACTTCACCGTCGTCGCGCCGCCGGGCGGCAACGACGGCGACGGCGACGCGCAGATGCGGGCGGCGCTGGTGCGGCACGGCCCGCTAGCCGTGGGTCTGAACGCGGCGTACATGCAGACGTACGTGGGCGGGGTGTCGTGCCCGCTGGTGTGCCCGCGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACGGCGAGCGTGGGTTCGCGGCGCTGCGGCTGGGCCACCGCCCCTACTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCGGCTCTGCCGCGGCCGCAACGTCTGCGG-CGTCGACACCATGGTCTCCGCCGTCGCTGTCGCCCCGCCGCCG-CCGTGATCGATTGATCGATATCGATCGG-CCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAAGCTTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATTAAGCTAGGGTATATTG]

[+] EMBL AK063422             [TCCCACCACCATGGCTGCTGCACCTGCACGGCTCGTCGTCCTTGTCCTCGTGGCGGTCGTCGTCGTCGTCGGCGGCGACGGCGACGCCGGCGTCATCCGGCAGGTGACGGACGGCGGGTACTGGCCGCCGGGGCTGCTCCCGGAGGCCCAGTTCGCGGCGTTCGTGCGGCGGCACGGGCGGGAGTACTCCGGGCCGGAGGAGTACGCGCGGCGGCTGCGCGTGTTCGCCGCCAACCTCGCCCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTCCGACCTCACCCGGGAGGAGTTCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTTGGCGACGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGGCCTCCCCGCCAGCTTCGACTGGCGTGACAGGGGCGCCGTGACCGACGTCAAGATGCAGGGCGCGTGCGGCTCCTGCTGGGCCTTCAGCACCACCGGCGCCGTCGAGGGCGCCAACTTCCTCGCCACCGGCAACCTCCTCGACCTCAGCGAGCAGCAGCTCGTCGACTGCGACCACACGTGCGACGCGGAGAAGAAGACGGAGTGCGACAGCGGGTGCGGCGGCGGGCTGATGACGAACGCCTACGCCTACCTGATGAGCTCGGGGGGGCTGATGGAGCAGAGCGCGTACCCATACACGGGCGCGCAGGGGACGTGCCGGTTCGACGCCAACCGGGTCGCCGTCCGCGTCGCCAACTTCACCGTCGTCGCGCCGCCGGGCGGCAACGACGGCGACGGCGACGCGCAGATGCGGGCGGCGCTGGTGCGGCACGGCCCGCTAGCCGTGGGTCTGAACGCGGCGTACATGCAGACGTACGTGGGCGGGGTGTCGTGCCCGCTGGTGTGCCCGCGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACGGCGAGCGTGGGTTCGCGGCGCTGCGGCTGGGCCACCGCCCCTACTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCGGCTCTGCCGCGGCCGCAACGTCTGCGG CGTCGACACCATGGTCTCCGCCGTCGCTGTCGCCCCGCCGCCG CCGTGATCGATTGATCGATATCGATCGG CCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAAGCTTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATTAAGCTAGGGTATATTG]
[-] EMBL AU176463             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGTCGCCAACTTCACCGTCGTCGCGCCGCCGGGCGGCAACGACGGCGACGGCGACGCGCAGATGCGGGCGGCGCTGGTGCGGCACGGCCCGCTAGCCGTGGGTCTGAACGCGGCGTACATGCAGACGTACGTGGGCGGGGTGTCGTGCCCGCTGGTGTGCCCGCGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACGGCGAGCGTGGGTTCGCGGCGCTGCGGCTGGGCCACCGCCCCTACTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGG                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C99426               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGAAACGTNT CGGCCGTCGACACCATGGTCTCCGCCCAGNGTGTCGCCCCGCCGCCGCCCGTGATCGATTGATCGATATCGATCGGCCCGCCGGCGANCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCNTGANTAAAGCTTTGCTTGGTTANCGGTGGGANACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTANAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATTANAAAAAGTTATGGACGTttnaaaa                ]


>consensus_10936#0 TCCCACCACCATGGCTGCTGCACCTGCACGGCTCGTCGTCCTTGTCCTCGTGGCGGTCGT CGTCGTCGTCGGCGGCGACGGCGACGCCGGCGTCATCCGGCAGGTGACGGACGGCGGGTA CTGGCCGCCGGGGCTGCTCCCGGAGGCCCAGTTCGCGGCGTTCGTGCGGCGGCACGGGCG GGAGTACTCCGGGCCGGAGGAGTACGCGCGGCGGCTGCGCGTGTTCGCCGCCAACCTCGC CCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTC CGACCTCACCCGGGAGGAGTTCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTTGGCGA CGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGG CCTCCCCGCCAGCTTCGACTGGCGTGACAGGGGCGCCGTGACCGACGTCAAGATGCAGGG CGCGTGCGGCTCCTGCTGGGCCTTCAGCACCACCGGCGCCGTCGAGGGCGCCAACTTCCT CGCCACCGGCAACCTCCTCGACCTCAGCGAGCAGCAGCTCGTCGACTGCGACCACACGTG CGACGCGGAGAAGAAGACGGAGTGCGACAGCGGGTGCGGCGGCGGGCTGATGACGAACGC CTACGCCTACCTGATGAGCTCGGGGGGGCTGATGGAGCAGAGCGCGTACCCATACACGGG CGCGCAGGGGACGTGCCGGTTCGACGCCAACCGGGTCGCCGTCCGCGTCGCCAACTTCAC CGTCGTCGCGCCGCCGGGCGGCAACGACGGCGACGGCGACGCGCAGATGCGGGCGGCGCT GGTGCGGCACGGCCCGCTAGCCGTGGGTCTGAACGCGGCGTACATGCAGACGTACGTGGG CGGGGTGTCGTGCCCGCTGGTGTGCCCGCGCGCGTGGGTGAACCACGGCGTGCTCCTCGT CGGCTACGGCGAGCGTGGGTTCGCGGCGCTGCGGCTGGGCCACCGCCCCTACTGGATCAT CAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCGGCTCTGCCGCGGCCG CAACGTCTGCGGCGTCGACACCATGGTCTCCGCCGTCGCTGTCGCCCCGCCGCCGCCGTG ATCGATTGATCGATATCGATCGGCCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAA GTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAAGCTTTGCTTGGTTAGCGGTGG GAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGG TTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATT AAGCTAGGGTATATTG



consensusID : consensus_10936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence
                              [TTCGAGGGGCCAATTTCTTTCTGCCACCGGGCAACCGTCTCTGCGACCTCAGCGAGCAGCAGCATCGTCGGCTGCGACCACACGTGCGACCGCGGAGAAGAAGACGGAGGTGCCGGACAGCGGGGGTGGCGGCGGCGGGGCGTGATGACAGAACGCCTACGCCGTACCCTGATGGAGCTCGGGGAGGACCAAGGATGGAGACAGAGGCGCGGTGACCCGGTACACGGCAGCAGACAGGGGTTCCCGGGTTCAGACAGCACAAACCCAGGGGTCGCCTCGTCCAGCGTCAGCCAAGTTCAACCGTCGTCGCAGCCGGACAGGACCGGACCGGGCAGCCAACTGTACGGGCAGACGCCGCAGATGCAGGCAGGCAGCTGGTCGCGGGCACAGGCCCAGCATCAGCCAGTGGGGCTGAACAGCGGCAGTACTGCAGACAGTACAGTGGGCAGGGATTTTCAGTGCACACGCATGGTGTGCACACAGCAGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACAGGCGAGCGCAGGGTTCGCAGGCAGCTGCGGCTGGGCACACCAGCCCCTACTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCAGGCT]

[+] EMBL BI808154             [TTCGAGGGGCCAATTTCTTTCTGCCACCGGGCAACCGTCTCTGCGACCTCAGCGAGCAGCAGCATCGTCGGCTGCGACCACACGTGCGACCGCGGAGAAGAAGACGGAGGTGCCGGACAGCGGGGGTGGCGGCGGCGGGGCGTGATGACAGAACGCCTACGCCGTACCCTGATGGAGCTCGGGGAGGACCAAGGATGGAGACAGAGGCGCGGTGACCCGGTACACGGCAGCAGACAGGGGTTCCCGGGTTCAGACAGCACAAACCCAGGGGTCGCCTCGTCCAGCGTCAGCCAAGTTCAACCGTCGTCGCAGCCGGACAGGACCGGACCGGGCAGCCAACTGTACGGGCAGACGCCGCAGATGCAGGCAGGCAGCTGGTCGCGGGCACAGGCCCAGCATCAGCCAGTGGGGCTGAACAGCGGCAGTACTGCAGACAGTACAGTGGGCAGGGATTTTCAGTGCACACGCATGGTGTGCACACAGCAGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACAGGCGAGCGCAGGGTTCGCAGGCAGCTGCGGCTGGGCACACCAGCCCCTACTGGATCATCAAGAACTCGTGGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCAGGCT]


>consensus_10936#1 TTCGAGGGGCCAATTTCTTTCTGCCACCGGGCAACCGTCTCTGCGACCTCAGCGAGCAGC AGCATCGTCGGCTGCGACCACACGTGCGACCGCGGAGAAGAAGACGGAGGTGCCGGACAG CGGGGGTGGCGGCGGCGGGGCGTGATGACAGAACGCCTACGCCGTACCCTGATGGAGCTC GGGGAGGACCAAGGATGGAGACAGAGGCGCGGTGACCCGGTACACGGCAGCAGACAGGGG TTCCCGGGTTCAGACAGCACAAACCCAGGGGTCGCCTCGTCCAGCGTCAGCCAAGTTCAA CCGTCGTCGCAGCCGGACAGGACCGGACCGGGCAGCCAACTGTACGGGCAGACGCCGCAG ATGCAGGCAGGCAGCTGGTCGCGGGCACAGGCCCAGCATCAGCCAGTGGGGCTGAACAGC GGCAGTACTGCAGACAGTACAGTGGGCAGGGATTTTCAGTGCACACGCATGGTGTGCACA CAGCAGCGCGTGGGTGAACCACGGCGTGCTCCTCGTCGGCTACAGGCGAGCGCAGGGTTC GCAGGCAGCTGCGGCTGGGCACACCAGCCCCTACTGGATCATCAAGAACTCGTGGGGGAA GGCGTGGGGGGAGCAGGGCTACTACCAGGCT



consensusID : consensus_10936#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence
                              [GNGCCGCCGTTNCGGGGGTGAANCGGAAAAGGNNANGAAGTGGGGGGTTNTNCCCGAGGGGCCGGGGGCGTGGGGACCAGGGGGTTCTTGTNGGTTACGGNGAGGCGGTTTCGGGGGCTGGGGNTGGGCCNCGNCCCCTANGGATCNTCCAAGAATTCGTGGGGAAGGCGTGGGGGGAGCAGGGNTANTACNGGNTNTGCNGCGGCCGCAACGTCTGCGGGTTGACACCATGNTTTTCGCCCGTCGCCGTCGCTCCGCCATGATCGATCGGCCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACTCGTACTGGATGTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACGTGTTACAAATGGTTTAACATAGTTGGGTTGTATGTCGATCTCCTACAGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAACCAACGCCCAATTGTGTTGTTCTATCAACTGTCAAGCACTCATCGAGTTCGCAATAGATTTTAAACATTGCTACCAAAAAAAAAAAAA]

[-] EMBL AA753444             [GNGCCGCCGTTNCGGGGGTGAANCGGAAAAGGNNANGAAGTGGGGGGTTNTNCCCGAGGGGCCGGGGGCGTGGGGACCAGGGGGTTCTTGTNGGTTACGGNGAGGCGGTTTCGGGGGCTGGGGNTGGGCCNCGNCCCCTANGGATCNTCCAAGAATTCGTGGGGAAGGCGTGGGGGGAGCAGGGNTANTACNGGNTNTGCNGCGGCCGCAACGTCTGCGGGTTGACACCATGNTTTTCGCCCGTCGCCGTCGCTCCGCCATGATCGATCGGCCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACTCGTACTGGATGTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACGTGTTACAAATGGTTTAACATAGTTGGGTTGTATGTCGATCTCCTACAGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAACCAACGCCCAATTGTGTTGTTCTATCAACTGTCAAGCACTCATCGAGTTCGCAATAGATTTTAAACATTGCTACCAAAAAAAAAAAAA]


>consensus_10936#2 GNGCCGCCGTTNCGGGGGTGAANCGGAAAAGGNNANGAAGTGGGGGGTTNTNCCCGAGGG GCCGGGGGCGTGGGGACCAGGGGGTTCTTGTNGGTTACGGNGAGGCGGTTTCGGGGGCTG GGGNTGGGCCNCGNCCCCTANGGATCNTCCAAGAATTCGTGGGGAAGGCGTGGGGGGAGC AGGGNTANTACNGGNTNTGCNGCGGCCGCAACGTCTGCGGGTTGACACCATGNTTTTCGC CCGTCGCCGTCGCTCCGCCATGATCGATCGGCCGCGCCGGCGATCTCACGTTACCGATGT GTCATGTGAAGTACTCGTACTGGATGTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGT AGTAGGTGCTTAGTACGTGTTACAAATGGTTTAACATAGTTGGGTTGTATGTCGATCTCC TACAGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTAGGGTATATTGAAGTCATC TTCAAGGGCTTTATTATTAAACCAACGCCCAATTGTGTTGTTCTATCAACTGTCAAGCAC TCATCGAGTTCGCAATAGATTTTAAACATTGCTACCAAAAAAAAAAAAA



consensusID : consensus_10936#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [CGCCGCCAACCTCGCCCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTCCGACCTCACCCGGGAGGAGTCCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTCGGCGACGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGGCCTCCCCGCCAGCTTACGACTGGCGTGACAGGGGGCGCCGTGACCGACGTCAAGATGCAGCGGCGCGTGCGGCTCCTGCTGGTGCCTACAGCACCACCGGCGCCGTACACGGCGCCAACTTCCTCGCCACCGGCAACCTCCTCGACCTCAGCGAGCAACAGCTCGTCGACTGCGACCACACTTGCCACCCGGAAAAGACACGAATGCCACACCGGTGCCGCGCCGGCGATGACCACGCCTACCCTACTATGACTCGGGGGGCCTATGAACAACCCTTACCATACCGGCCCCCAGGACTTCCGTCGACCCCACGGTTCCTTCCCTTCCAATCACCTGTCCCCCGGCGAAAAAGNATCAACCAATCG]

[+] EMBL BQ164725             [CGCCGCCAACCTCGCCCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTCCGACCTCACCCGGGAGGAGTCCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTCGGCGACGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGGCCTCCCCGCCAGCTTACGACTGGCGTGACAGGGGGCGCCGTGACCGACGTCAAGATGCAGCGGCGCGTGCGGCTCCTGCTGGTGCCTACAGCACCACCGGCGCCGTACACGGCGCCAACTTCCTCGCCACCGGCAACCTCCTCGACCTCAGCGAGCAACAGCTCGTCGACTGCGACCACACTTGCCACCCGGAAAAGACACGAATGCCACACCGGTGCCGCGCCGGCGATGACCACGCCTACCCTACTATGACTCGGGGGGCCTATGAACAACCCTTACCATACCGGCCCCCAGGACTTCCGTCGACCCCACGGTTCCTTCCCTTCCAATCACCTGTCCCCCGGCGAAAAAGNATCAACCAATCG]


>consensus_10936#3 CGCCGCCAACCTCGCCCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGG CGTCACCCCGTTCTCCGACCTCACCCGGGAGGAGTCCGAGGCGCGCTTGACGGGCCTCGC CGCCGACGTCGGCGACGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGA GGAGGAGGTGTCCGGCCTCCCCGCCAGCTTACGACTGGCGTGACAGGGGGCGCCGTGACC GACGTCAAGATGCAGCGGCGCGTGCGGCTCCTGCTGGTGCCTACAGCACCACCGGCGCCG TACACGGCGCCAACTTCCTCGCCACCGGCAACCTCCTCGACCTCAGCGAGCAACAGCTCG TCGACTGCGACCACACTTGCCACCCGGAAAAGACACGAATGCCACACCGGTGCCGCGCCG GCGATGACCACGCCTACCCTACTATGACTCGGGGGGCCTATGAACAACCCTTACCATACC GGCCCCCAGGACTTCCGTCGACCCCACGGTTCCTTCCCTTCCAATCACCTGTCCCCCGGC GAAAAAGNATCAACCAATCG



consensusID : consensus_10936#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence
                              [GGNAATGCCNCCGGGTGTTCCGGAGGNCAANTGCGGGTTNANGGGGGGCACGGGGGGGAGTAATTCGGGCCGGNGGATACGCGCGGCGGATGCGAGGTTNACNGCNAACTTNGCCNGGGCGGCGGGGCACCAGGGCGNTTGACCCCACCGGGGGCCAGGGGTCACCCCCTTGTCCGACNTCACCCGGGAGGAGTTCGAGGCGCGCTNGACGGGCCTCGCCACCGTCGNTCCGCCATGATCGATCGGCCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACTCGTACTGGATGTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACGTGTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTCCTACAGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAACCAAAAAAAAAAAAA]

[-] EMBL AA752148             [GGNAATGCCNCCGGGTGTTCCGGAGGNCAANTGCGGGTTNANGGGGGGCACGGGGGGGAGTAATTCGGGCCGGNGGATACGCGCGGCGGATGCGAGGTTNACNGCNAACTTNGCCNGGGCGGCGGGGCACCAGGGCGNTTGACCCCACCGGGGGCCAGGGGTCACCCCCTTGTCCGACNTCACCCGGGAGGAGTTCGAGGCGCGCTNGACGGGCCTCGCCACCGTCGNTCCGCCATGATCGATCGGCCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACTCGTACTGGATGTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACGTGTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTCCTACAGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAACCAAAAAAAAAAAAA]


>consensus_10936#4 GGNAATGCCNCCGGGTGTTCCGGAGGNCAANTGCGGGTTNANGGGGGGCACGGGGGGGAG TAATTCGGGCCGGNGGATACGCGCGGCGGATGCGAGGTTNACNGCNAACTTNGCCNGGGC GGCGGGGCACCAGGGCGNTTGACCCCACCGGGGGCCAGGGGTCACCCCCTTGTCCGACNT CACCCGGGAGGAGTTCGAGGCGCGCTNGACGGGCCTCGCCACCGTCGNTCCGCCATGATC GATCGGCCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACTCGTACTGGAT GTGCTTGCTTGGTTAGCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACGTGTTACAA ATGGTTTTACATAGTTGGGTTGTATGTCGATCTCCTACAGAATAACAAAAAGTTATGGAC GTGTACAGATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAACCAA AAAAAAAAAAA



consensusID : consensus_10936#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence
                              [TGGAGCTCCACGCGNTGNCGGCCGCAACNTCTGCGCCGTCGACACATGGTCCCGCCANCCTGCGCCCCCCGCCGCCGTGATCGATTGATCGATATCGATCGGCCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAACTTTGCTTGGTTANCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAAAAA]

[+] EMBL C99418               [TGGAGCTCCACGCGNTGNCGGCCGCAACNTCTGCGCCGTCGACACATGGTCCCGCCANCCTGCGCCCCCCGCCGCCGTGATCGATTGATCGATATCGATCGGCCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAACTTTGCTTGGTTANCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATTAAAAAA]


>consensus_10936#5 TGGAGCTCCACGCGNTGNCGGCCGCAACNTCTGCGCCGTCGACACATGGTCCCGCCANCC TGCGCCCCCCGCCGCCGTGATCGATTGATCGATATCGATCGGCCGCCGGCGATCTCACGT TACCGATGTGTTATGTGAAGTACGGAGTACTACTGTATACTGGATGTGCTTGATTAAACT TTGCTTGGTTANCGGTGGGAGACGTGGCGGTAGTAGGTGCTTAGTACTACGTTTTACAAA TGGTTTTACATAGTTGGGTTGTATGTCGATCTACTACTAGTGAATACAGAATAACAAAAA GTTATGGACGTGTACATTAAGCTAGGGTATATTGAAGTCATCTTCAAGGGCTTTATTATT AAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10936#0      TCCCACCACCATGGCTGCTGCACCTGCACGGCTCGTCGTCCTTGTCCTCGTGGCGGTCGT 60
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CGTCGTCGTCGGCGGCGACGGCGACGCCGGCGTCATCCGGCAGGTGACGGACGGCGGGTA 120
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CTGGCCGCCGGGGCTGCTCCCGGAGGCCCAGTTCGCGGCGTTCGTGCGGCGGCACGGGCG 180
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      GGAGTACTCCGGGCCGGAGGAGTACGCGCGGCGGCTGCGCGTGTTCGCCGCCAACCTCGC 240
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CCGCGCCGCGGCGCACCAGGCGCTCGACCCGACCGCGCGCCACGGCGTCACCCCGTTCTC 300
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CGACCTCACCCGGGAGGAGTTCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTTGGCGA 360
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CGACGTCCGGAGGCGGCCGATGCCGTCCGCCGCGCCGGCCACGGAGGAGGAGGTGTCCGG 420
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CCTCCCCGCCAGCTTCGACTGGCGTGACAGGGGCGCCGTGACCGACGTCAAGATGCAGGG 480
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      CGCGTGCGGCTCCTGCTGGGCCTTCAGCACCACCGGCGCCGTCGAGGGCGCCAACTTCCT 540
consensus_10936#1      ----------------------------------------TTCGAGGG-GCCAATTTCTT 19
consensus_10936#3      ---------------------------------------------CGCCGCCAACCTCGC 15
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      C---GCCACCGG-CAACCTCCTC---GACCTCA--GCGAGCAGCAGC-TCGTCGA---CT 587
consensus_10936#1      TC-TGCCACCGGGCAACCGTCTCTGCGACCTCA--GCGAGCAGCAGCATCGTCGG---CT 73
consensus_10936#3      CCGCGCCGCGGCGCACCAGGCGCT-CGACCCGACCGCGCGCCACGGCGTCACCCCGTTCT 74
consensus_10936#2      -------------------------------------GNGCCGCCGTTNCGGGGGTGAAN 23
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      GCGACCACACGTGCGAC-GCGGAGAAGAAGACGGAG-TGC--GACAGCGGGTGCGGCGGC 643
consensus_10936#1      GCGACCACACGTGCGACCGCGGAGAAGAAGACGGAGGTGCCGGACAGCGGGGGTGGCGGC 133
consensus_10936#3      CCGACCTCACCCGGGA----GGAGTCCGAGGCGCGCTTGACGGGCCTCGCCGCCGACGTC 130
consensus_10936#2      CGGAAAAGGNNANGAAGTGGGGGGTTNTNCCCGAGGGGCCGGGGGCGTGGGGACCAGGGG 83
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      --GGNAATGCCNCCGGGTGTTCCGGAGGNCAANTGCGGGTTNANGGG-GGGCACGGGGGG 57
                                                                                   

consensus_10936#0      GG----GC-TGATGAC-GAACGCCTACGCC-TACC-TGATG-AGCTCGGGGGGGCT---- 690
consensus_10936#1      GGCGGGGCGTGATGACAGAACGCCTACGCCGTACCCTGATGGAGCTCGGGGAGGACCAAG 193
consensus_10936#3      GGCGACGA-CGTCCGGAGGCGGCCGATGCCGT-CCGCCGCGCCGGCCACGGAGGAG---- 184
consensus_10936#2      GTTCTTGTNGGTTACGGNGAGGCGGTTTCGGGGGCTGGGGNTGGGCCNCGNCCCCTANGG 143
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      GAGTAATTCGGGCCGGNGGATACGCGCGGCGGATGCGAGGTTNACNGCNAACTTNGCCNG 117
                                                                                   

consensus_10936#0      GATGGAG-CAGAG-CGCGT--ACCCA-TACACGGGCGCGCAGGGGACGTGCCGGTT---- 741
consensus_10936#1      GATGGAGACAGAGGCGCGGTGACCCGGTACACGGCAGCAGACAGGGGTTCCCGGGTTCAG 253
consensus_10936#3      GAGGTGTCCGGCCTCCCCGCCAGCTTACGACTGGCGT--GACAGGGGGCGCCGTGAC--- 239
consensus_10936#2      ATCNTCCAAGAATTCGTGGGGAAGGCGTGGGGGGA-GCAGGGNTANTACNGGNTNTGC-N 201
consensus_10936#5      ---------------------------TGGAGCTCCACGCGNTGNCGGCCGCAACNTC-T 32
consensus_10936#4      GGCGGCGGGGCACCAGGGCGNTTGACCCCACCGGGGGCCAGGGGTCACCCCCTTGTCC-G 176
                                                                                   

consensus_10936#0      -CGACGCCAACC---GGGTCGCC--GTCC-GCGTC-GCCAACTTCA-C--CG--TCGTCG 788
consensus_10936#1      ACAGCACAAACCCAGGGGTCGCCTCGTCCAGCGTCAGCCAAGTTCAAC--CG--TCGTCG 309
consensus_10936#3      -CGACGTCAAGAT--GCAGCGGCGCGTGCGGCTCCTGCTGGTGCCTACAGCA--CCACCG 294
consensus_10936#2      GCGGCCGCAACGTCTGCGGGTTGACACCATGNTTTTCGC-CCGTCGCCGTCGCTCCGCCA 260
consensus_10936#5      GCGCCGTCGACACATG-GTCCCGCCANCCTGCGCCCCCCGCCGCCGTGATCGATTGATCG 91
consensus_10936#4      ACNTCACCCGGGAGGAGTTCGAGGCGCGCTNGACGGGCC-TCGCCACCGTCGNTCCGCCA 235
                        *  *                                       *     *       * 

consensus_10936#0      C-GCCG-------CCGGGC--GGCAAC-GACGGCGACGGC-GACGC-GCAGATGCGGGCG 835
consensus_10936#1      CAGCCGGACAGGACCGGACCGGGCAGCCAACTGTACGGGCAGACGCCGCAGATGCAGGCA 369
consensus_10936#3      GCGCCGTACA----CGGCGCCAACTTC-CTCGCCACCGGC-AACCTCCTCGACCTCAGCG 348
consensus_10936#2      TGATCGATCGG--CCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACT--- 315
consensus_10936#5      ATATCGATCGG--CCGC--CGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAG 147
consensus_10936#4      TGATCGATCGG--CCGCGCCGGCGATCTCACGTTACCGATGTGTCATGTGAAGTACT--- 290
                           **        **          *   *      *             *        

consensus_10936#0      GC--GCTGGT-GCGG-CACGGCCC------------GCTAGCC-GTGGGTCTGAAC-GCG 877
consensus_10936#1      GGCAGCTGGTCGCGGGCACAGGCCCA--------GCATCAGCCAGTGGGGCTGAACAGCG 421
consensus_10936#3      AGCAACAGCTCGTCGACTGCGACC----------ACACTTGCCACCCGGAAAAGAC-ACG 397
consensus_10936#2      --------CGTACTGGATGTGCTTG-----------CTTGGTTAGCGGTGGGAGAC-GTG 355
consensus_10936#5      TACTACTGTATACTGGATGTGCTTGATTAAACTTTGCTTGGTTANCGGTGGGAGAC-GTG 206
consensus_10936#4      --------CGTACTGGATGTGCTTG-----------CTTGGTTAGCGGTGGGAGAC-GTG 330
                                     *     *                   *      *      **   *

consensus_10936#0      GCGTACAT--GCAGAC-GTAC-GTGGGCGGGGTGTC---GTGCCCGC---TGGTGTGCCC 927
consensus_10936#1      GCAGTACT--GCAGACAGTACAGTGGGCAGGGATTTTCAGTGCACACGCATGGTGTGCAC 479
consensus_10936#3      --AATGCC--ACAC-CGGTGC--CGCGCCGGCGATGACCACGCCTAC-CCTACTATGACT 449
consensus_10936#2      GCGGTAGTAGGTGCTTAGTAC---GTGTTACAAATGGTTTAACATAGTTGGGTTGTATGT 412
consensus_10936#5      GCGGTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGT 266
consensus_10936#4      GCGGTAGTAGGTGCTTAGTAC---GTGTTACAAATGGTTTTACATAGTTGGGTTGTATGT 387
                                        ** *   *         *       *          * *    

consensus_10936#0      GC----GCGCGT---GGGTGAACCACGGCGTGCT--CCTCGTCGGCTAC-GGCGAGCGT- 976
consensus_10936#1      ACAGCAGCGCGT---GGGTGAACCACGGCGTGCT--CCTCGTCGGCTACAGGCGAGCGCA 534
consensus_10936#3      CGGGGGGCCTAT---GAACAACCCTTACCATACCGGCCCCCAGGACTTCCGTCGACCCCA 506
consensus_10936#2      CGATCTCCTAC----------AGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTA 462
consensus_10936#5      CGATCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACA--TTAAGCTA 324
consensus_10936#4      CGATCTCCTAC----------AGAATAACAAAAAGTTATGGACGTGTACAGATTAAGCTA 437
                              *                    *              *  * *     *     

consensus_10936#0      GGGTTCGCGGC--GCTGCGGCTGGGC-CACC-G-CCCCTACTGGATCATCAAGAACTCGT 1031
consensus_10936#1      GGGTTCGCAGGCAGCTGCGGCTGGGCACACCAG-CCCCTACTGGATCATCAAGAACTCGT 593
consensus_10936#3      CGGTTC--------CTTCCCTTCCAATCACCTGTCCCCCGGCGAAAAAGNATCAACCAAT 558
consensus_10936#2      GGGTATA-------TTGAAGTCATCTTCAAGGG--CTTTATTATTAAACCAACGCCCAAT 513
consensus_10936#5      GGGTATA-------TTGAAGTCATCTTCAAGGG--CTTTATTATTAAAAAA--------- 366
consensus_10936#4      GGGTATA-------TTGAAGTCATCTTCAAGGG--CTTTATTATTAAACCAAAAAAAAAA 488
                        ***           *           **   *  *           *  *         

consensus_10936#0      GGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCGGCTCTGCCGCGGCCGCAACGTCTGCG 1091
consensus_10936#1      GGGGGAAGGCGTGGGGGGAGCAGGGCTACTACCAGGCT---------------------- 631
consensus_10936#3      CG---------------------------------------------------------- 560
consensus_10936#2      TGTGTTGTTCTATCAACTGTCAAGCACTCATCGAGTTCGCAATAGATTTTAAACATTGCT 573
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      AAA--------------------------------------------------------- 491
                                                                                   

consensus_10936#0      GCGTCGACACCATGGTCTCCGCCGTCGCTGTCGCCCCGCCGCCGCCGTGATCGATTGATC 1151
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ACCAAAAAAAAAAAAA-------------------------------------------- 589
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      GATATCGATCGGCCGCCGGCGATCTCACGTTACCGATGTGTTATGTGAAGTACGGAGTAC 1211
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      TACTGTATACTGGATGTGCTTGATTAAAGCTTTGCTTGGTTAGCGGTGGGAGACGTGGCG 1271
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      GTAGTAGGTGCTTAGTACTACGTTTTACAAATGGTTTTACATAGTTGGGTTGTATGTCGA 1331
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      TCTACTACTAGTGAATACAGAATAACAAAAAGTTATGGACGTGTACATTAAGCTAGGGTA 1391
consensus_10936#1      ------------------------------------------------------------
consensus_10936#3      ------------------------------------------------------------
consensus_10936#2      ------------------------------------------------------------
consensus_10936#5      ------------------------------------------------------------
consensus_10936#4      ------------------------------------------------------------
                                                                                   

consensus_10936#0      TATTG 1396
consensus_10936#1      -----
consensus_10936#3      -----
consensus_10936#2      -----
consensus_10936#5      -----
consensus_10936#4      -----
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)