These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence [GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGAGCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGAAAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCT-GGAGGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAGGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAGACATTTGTATGCACTGTAAAAAAAGA] [+] EMBL OSC109451 [GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGAGCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGAAAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGGAGGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAGGA ] [+] EMBL CB667435 [ AAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCT GGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCA ] [-] EMBL CB667436 [ TTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAGACATTTGTATGCACTGTAAAAAAAGA] consensusID : consensus_10940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1020 fasta sequence [GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAATATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT-GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGACAAAAAAAA] [+] EMBL CF312414 [GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAATATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATCCAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCCTTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGGATCTGTCAAGACAATCATCTGCTTGACTCCAG ] [+] EMBL AK058447 [ TCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCGAAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGCAGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTATGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGAC ] [+] EMBL CA998882 [ AAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCA ] [+] EMBL AU166308 [ AGATCCAAAAAT GGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGGAAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTTGGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAAAAAAAAAAAA] consensusID : consensus_10940#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGNCTNAAAGGT] [+] EMBL CA764062 [ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCTTCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATTTTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCATTTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAAGAGCTCATGAAAATGGATTACAGGAAAATTACTACTGGCTGGATCGAGTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATCCAAGATGAGGGACGNCTNAAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10940#0 GCAGCCCTATGGTTGAAGCTCAATGCTTTGTGCAACTAGGATTTCCTGTGGTTTTAAAGA 60 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 ------------------------------------------------------------ consensus_10940#0 GCACAACAATGACAGAGGATATTCACTATGTTGGGTTTCTAAGTAAACTTCTGGAGACGA 120 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 ------------------------------------------------------------ consensus_10940#0 AAATCATGCAAGTGCTTCGTTTCAAATATGGACAGGTTTACTCAGTCAATGTAGGTGTCT 180 consensus_10940#2 ---------------ACGAGNACAAGGGGGGACAGGTTTACTCAGTCAATGTAGGTGTCT 45 consensus_10940#1 ------------------------------------------------------------ consensus_10940#0 TCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATT 240 consensus_10940#2 TCTTAGGTGGCAACAAACCTTCAAGAAGTGGAGATATTCGTGGAGATATAAGTGTGAATT 105 consensus_10940#1 ------------------------------------------------------------ consensus_10940#0 TTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAGGAGATATCAT 300 consensus_10940#2 TTTCATGCGATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCAT 165 consensus_10940#1 --------GATCCAGACATGTCATCCAAACTTGTTGACTTTGTGCTGGAAGAGATATCAT 52 ***************************************** ********** consensus_10940#0 TTCTACAAAATGAAGGCCCTTCTGAGGAAGACGTATTAACTATCCTTGAAATTGAACAAA 360 consensus_10940#2 TTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAA 225 consensus_10940#1 TTCTACAAAATGAAGGCCCTTCTGAAGAAGACGTATTAACTATCCTTGAAATTGAACAAA 112 ************************* ********************************** consensus_10940#0 GAGCTCATGAAAATGGATTACAGG------------------------------------ 384 consensus_10940#2 GAGCTCATGAAAATGGATTACAGG------------------------------------ 249 consensus_10940#1 GAGCTCATGAAAATGGATTACAGGTTTAGTGAAGTTTATCTTTATCAAATTCGTGCCAAT 172 ************************ consensus_10940#0 -------------------------------------AAAATTACTACTGGCTGGATCGA 407 consensus_10940#2 -------------------------------------AAAATTACTACTGGCTGGATCGA 272 consensus_10940#1 ATAGTGCATAGTGTTCTAATCTTTGAGAAACCACAGGAAAATTACTACTGGCTGGATCGA 232 *********************** consensus_10940#0 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATC 467 consensus_10940#2 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGAGATC 332 consensus_10940#1 GTTCTGCGGAGCTATCAATCAAGGGTTTATTCTGGAGATGTTGGATCCACCTTTGGGATC 292 ******************************************************* **** consensus_10940#0 CAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCC 527 consensus_10940#2 CAAGATGAGGGACGNCTNAAAGGT------------------------------------ 356 consensus_10940#1 CAAGATGAGGGACGTCTAAAGGTTAGAGAGGCTTTGACACCACAATCGATGCAAATGGCC 352 ************** ** ** * * consensus_10940#0 TTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCG 587 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 TTGCAAAGAGTTGTGCCTTTCCCTTGCAGAAAACAGTTCACTGTAGTTATTCTTATGCCG 412 consensus_10940#0 AAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGC 647 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 AAGTCATCCTGCTGGAACTCGTTTAAGGCACTGCTTACTTGGAGCCCTGGTGGATTTAGC 472 consensus_10940#0 AGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGG 707 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 AGAGACGCAAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGG 532 consensus_10940#0 AGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGT 767 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 AGATACTCACGTAGCACATTGAGATCATAGCACGTCTATCACGCTCTCGACTGTTTTAGT 592 consensus_10940#0 AAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGA 827 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 AAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGGTACATGAGCTGA 652 consensus_10940#0 CGACAAGATTTTGGTTTCCTCCTGNGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGAT 887 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 CGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGAT 712 consensus_10940#0 TGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCG 947 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 TGTCCGTCACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCG 772 consensus_10940#0 TGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTA 1007 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 TGCGCTAAGCCTGTAACACAACACCATACGATTCTTTTGTCGCAGCATACGTGCCCCGTA 832 consensus_10940#0 ACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGG 1067 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 ACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAGACTGCAAGTAGG 892 consensus_10940#0 AAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTT 1127 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 AAACGGCAGGTTGCATGCTATTAGCTGAAGTAGTAGCGGTTTTGTTTCTTGGTGAGCTTT 952 consensus_10940#0 GGATGTGTGTTTGTGGGAAAACCCCAGAATGATTAAAAGAATATGGGAGTAAGGATGCAG 1187 consensus_10940#2 ------------------------------------------------------------ consensus_10940#1 GGATGTGTGTTTGTGGGAAAACCCAGAATGATAAAAGAATATAGGAGTAAGGATGCAGAC 1012 consensus_10940#0 ACATTTGTATGCACTGTAAAAAAAGA 1213 consensus_10940#2 -------------------------- consensus_10940#1 AAAAAAAA------------------ 1020 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||