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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 883 fasta sequence
[TTTTTCATTGATGGACGATGGGACCATACATCACCATTCCAAAAAAAAGGACATTGTTCAAACACATTCAAAAACATATGAAAGGAAAGCGGAACAACGTGACATGGTGAGCGTCACATTACGTCCTTGTGATTTGCATTGCACTGTGCATGCAGCATGCTTCACAAATTCAGCAATATCCTTTTCTTGTTAAGAGTTGCCTCCGACATAACTTGTGCATTCAAGATTGCACATTGCACACCTCGCACAAGGCAAACGGATATATTTTTCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAATTGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAATTTGGTGCTGATTCAAGCATCTCCGGAGACAGTTGTCCCAACTTGCTCAGATCAAGATCTGGAGCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATGTTTTGCATGATCTCAAAAATCTTTGCCATGTTTTCCGGCTCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTGTTGTAACGCTCATATTCTTCTTTGCTTATTTTGCTTTTATTTTCCTCGAGCCATTTTGGGTATTTTTCCACAATGTCCTTCATCGGCTCATGAAGAATCTCCTTGGATAGAAGTTGTTGCATCATTGTTTCAACAATGGAGTCCATATCCTGCGCGCCGGCGAACTCCTCGAACTGCTTAACGAACTCCTCCATCATCGCATCGTCATCCAGCCCCGCCATGGCCC]
[-] EMBL AU166277 [TTTTTCATTGATGGACGATGGGACCATACATCACCATTCCAAAAAAAAGGACATTGTTCAAACACATTCAAAAACATATGAAAGGAAAGCGGAACAACGTGACATGGTGAGCGTCACATTACGTCCTTGTGATTTGCATTGCACTGTGCATGCAGCATGCTTCACAAATTCAGCAATATCCTTTTCTTGTTAAGAGTTGCCTCCGACATAACTTGTGCATTCAAGATTGCACATTGCACACCTCGCACAAGGCAAACGGATATATTTTTCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAATTGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGG ]
[-] EMBL BI799612 [ tttTTGGACACCTCGCACAAGGGAAACGGATATATTTTTCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAA TGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAA TTGGTGCTGATTCAAGCATCTCCGGAGACAG TGTCCCAACTTGCTCAGATCAAGATCTGGAGCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATG TTTGCATGATCTCAAAAATCTTTG CATGTTTTCCGGGTCCTTTTCGTAGA CTCATTAAGCTTCATCATGAGTTCAAGCTGGTTGGGGTAACGCTCAT ]
[+] EMBL BE530903 [ TTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAATTGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAATTTGGTGCTGATTCAAGCATCTCCGGAGACAGTTGTCCCAACTTGCTCAGATCAAGATCTGGAGCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATGTTTTGCATGATCTCAAAAATCTTTGCCATGTTTTCCGGCTCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTGTTGTAACGCTCATATTCTTCTTTGCTTATTTTGC ]
[+] EMBL CA756707 [ CCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAATTGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAATTTGGTGCTGATTCAAGCATCTCCGGAGACAGTTGTCCCAACTTGCTCAGATCAAGATCTGGAGCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATGTTTTGCATGATCTCAAAAATCTTTGCCATGTTTTCCGGCTCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTGTTGTAACGCTCATATTCTTCTTTGCTTATTTTGCTTTTATTTTCCTCGAGCCATTTTGGGTATTTTTCCACAATGTCCTTCATCGGCTCATGAAGAATCTCCTTGGATAGAAGTTGTTGCATCATTGTTTCAACAATGGAGTCCATATCCTGCGCGCCGGCGAACTCCTCGAACTGCTTAACGAACTCCTCCATCATCGCATCGTCATCCAGCCCCGCCATGGCCC]
consensusID : consensus_10944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[TTTTTTTTTTAGGCAAACGGATATATTTTGGCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACA-TGAGTTCATATGTATCTGTGAAGCTTTACAA-TGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAATTTGGTGCTGATTCAAGCATCTCCGGAGACAG-TGTCCCAACTT-GCTCAGATCAAGATCTGGAGCAAGGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATG-TTTGCATGATCTCAAAAATC-TTGCCA-TGTTTTCCGGC-TCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTG-TGTAACGCTCATATTCTTCTTGCTTATTTGGCTTTTATTTTCCTCGAGCCATTT-GGGTATTTTTCCACAAGTGTCCTTCATCGGGTCATGAAGAATCTCCTTGGAT]
[-] EMBL BI798675 [TTTTTTTTTTAGGCAAACGGATATATTTTGGCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACA TGAGTTCATATGTATCTGTGAAGCTTTACAA TGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAATTTGGTGCTGATTCAAGCATCTCCGGAGACAG TGTCCCAACTT GCTCAGATCAAGATCTGGAGCAAGGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATG TTTGCATGATCTCAAAAATC TTGCCA TGTTTTCCGGC TCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTG TGTAACGCTCATATTCTTCTTGCTTATTTGGCTTTTATTTTCCTCGAGCCATTT GGGTATTTTTCCACAAGTGTCCTTCATCGGGTCATGAAGAATCTCCTTGGAT]
[-] EMBL BI798902 [TTTTTTTTTTAGGCAAACGGATATATTTT TCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTTTACAATTGATCCATATGAAAGTAACTTTAGGGAAAGGGTAGAGATAAGGTAGCTACTTCATAATCCATAACGGAATGTTTTACTCATCACATTACACAGCAA TTGGTGCTGATTCAAGCATCTCCGGAGACAGTTGTCCCAACTTGGCTCAGATCAAGATCTGGAGCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATGTTTTGCATGATCTCAAAAATCTTTGCCAGTGTTTTCCGGCGTCCTTTTCGTAGACCTCATTAAGCTTCATCATGAGTTCAAGCTGGTTGTTGTAACGCTCATATTCTTCTTGCTTATTTGCGTTTTATTTTCCTCGAGCCATTTGGGGTATTTTTCCACAA TGTCCTTCATCGGGTCATGAAGA ]
consensusID : consensus_10944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[TTTTTTTTTTAGGCAAACGGATATATTATATTCTTCCCTTTCACGGTACATCAATTCGATACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCGGTGAAGCTTTACAATAGGATCCATATGAACAGTACACTTTAGGGGAAAGGGTAGAGGATAAGGTACGCTACGTTCATCAACTCCATAACCGGAATGTCTGACTCATCACATTACACACGCAATTAGGTGCTGATATCAAGACATCTCCGGAGACAGATTGTCCCAACTGGCTCATGATCAAGATCTGGAGCAGGGTCTTGAACATGATCACTGGGGGGTTGACCACATTCTTGCAGTGTTGGGCA]
[-] EMBL BI794883 [TTTTTTTTTTAGGCAAACGGATATATTATATTCTTCCCTTTCACGGTACATCAATTCGATACAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCGGTGAAGCTTTACAATAGGATCCATATGAACAGTACACTTTAGGGGAAAGGGTAGAGGATAAGGTACGCTACGTTCATCAACTCCATAACCGGAATGTCTGACTCATCACATTACACACGCAATTAGGTGCTGATATCAAGACATCTCCGGAGACAGATTGTCCCAACTGGCTCATGATCAAGATCTGGAGCAGGGTCTTGAACATGATCACTGGGGGGTTGACCACATTCTTGCAGTGTTGGGCA]
consensusID : consensus_10944#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACACCTCGNACAAGGNAAACGGATATATTTTTCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGNTAAAGANTAAGAAAACATTGAGTTCATATGTATCTGTNAAGCTTTACAATTGATCCATATGAAAGNAA]
[+] EMBL AU175071 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACACCTCGNACAAGGNAAACGGATATATTTTTCTTCCCTTTCACAGTACATCAATTCGAACAAATGTATCTTTCGNTAAAGANTAAGAAAACATTGAGTTCATATGTATCTGTNAAGCTTTACAATTGATCCATATGAAAGNAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10944#1 ------------------------------------------------------------
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 TTTTTCATTGATGGACGATGGGACCATACATCACCATTCCAAAAAAAAGGACATTGTTCA 60
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 ------------------------------------------------------------
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 AACACATTCAAAAACATATGAAAGGAAAGCGGAACAACGTGACATGGTGAGCGTCACATT 120
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 ------------------------------------------------------------
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 ACGTCCTTGTGATTTGCATTGCACTGTGCATGCAGCATGCTTCACAAATTCAGCAATATC 180
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 -----------------------------------------------------------T 1
consensus_10944#2 -----------------------------------------------------------T 1
consensus_10944#0 CTTTTCTTGTTAAGAGTTGCCTCCGACATAACTTGTGCATTCAAGATTGCACATTGCACA 240
consensus_10944#3 ------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACA 36
consensus_10944#1 TTTTTTTTTAGGCAAACGGATATATTTTGG-CTTCCCTTTCACAGTACATCAATTCGA-A 59
consensus_10944#2 TTTTTTTTTAGGCAAACGGATATATTATATTCTTCCCTTTCACGGTACATCAATTCGATA 61
consensus_10944#0 CCTCGCACAAGGCAAACGGATATATTTT--TCTTCCCTTTCACAGTACATCAATTCGA-A 297
consensus_10944#3 CCTCGNACAAGGNAAACGGATATATTTT--TCTTCCCTTTCACAGTACATCAATTCGA-A 93
* *** ************* * ************ ************** *
consensus_10944#1 CAAATGTATCTTTCGCTAAAGAATAAGAAAACAT-GAGTTCATATGTATCTGTGAAGCTT 118
consensus_10944#2 CAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCGGTGAAGCTT 121
consensus_10944#0 CAAATGTATCTTTCGCTAAAGAATAAGAAAACATTGAGTTCATATGTATCTGTGAAGCTT 357
consensus_10944#3 CAAATGTATCTTTCGNTAAAGANTAAGAAAACATTGAGTTCATATGTATCTGTNAAGCTT 153
*************** ****** *********** *************** ** ******
consensus_10944#1 TACAAT--GATCCATATGAA-AGTA-ACTTTAGGG-AAAGGGTAGAG-ATAAGGTA-GCT 171
consensus_10944#2 TACAATAGGATCCATATGAACAGTACACTTTAGGGGAAAGGGTAGAGGATAAGGTACGCT 181
consensus_10944#0 TACAATT-GATCCATATGAA-AGTA-ACTTTAGGG-AAAGGGTAGAG-ATAAGGTA-GCT 411
consensus_10944#3 TACAATT-GATCCATATGAA-AGNAA---------------------------------- 177
****** ************ ** *
consensus_10944#1 AC-TTCATAA--TCCATAAC-GGAATGTTTTACTCATCACATTACACA-GCAATTTGGTG 226
consensus_10944#2 ACGTTCATCAACTCCATAACCGGAATGTCTGACTCATCACATTACACACGCAATTAGGTG 241
consensus_10944#0 AC-TTCATAA--TCCATAAC-GGAATGTTTTACTCATCACATTACACA-GCAATTTGGTG 466
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 CTGAT-TCAAG-CATCTCCGGAGACAG--TGTCCCAACTTGCTCA-GATCAAGATCTGGA 281
consensus_10944#2 CTGATATCAAGACATCTCCGGAGACAGATTGTCCCAACTGGCTCATGATCAAGATCTGGA 301
consensus_10944#0 CTGAT-TCAAG-CATCTCCGGAGACAG-TTGTCCCAACTTGCTCA-GATCAAGATCTGGA 522
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 GCAAGGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCA-TGTTTGCATGATC 340
consensus_10944#2 GCAGGGTCTTGAACATGATCACTGGGGGGTTGACCACATTCTTGCA-GTGTTGGGCA--- 357
consensus_10944#0 GCAATGTCTTGAACAAGATCACTGGGGGGTTGACCACATTCTTGCATGTTTTGCATGATC 582
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 TCAAAAATCTT-GCCATGTTTTCCGGCTCCTTTTCGTAGACCTCATTAAGCTTCATCATG 399
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 TCAAAAATCTTTGCCATGTTTTCCGGCTCCTTTTCGTAGACCTCATTAAGCTTCATCATG 642
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 AGTTCAAGCTGGTTGT-GTAACGCTCATATTCTTCTT-GCTTATTTGGCTTTTATTTTCC 457
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 AGTTCAAGCTGGTTGTTGTAACGCTCATATTCTTCTTTGCTTATTTTGCTTTTATTTTCC 702
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 TCGAGCCATTTGGGTATTTTTCCACAAGTGTCCTTCATCGGGTCATGAAGAATCTCCTTG 517
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 TCGAGCCATTTTGGGTATTTTTCCACAATGTCCTTCATCGGCTCATGAAGAATCTCCTTG 762
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 GAT--------------------------------------------------------- 520
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 GATAGAAGTTGTTGCATCATTGTTTCAACAATGGAGTCCATATCCTGCGCGCCGGCGAAC 822
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 ------------------------------------------------------------
consensus_10944#2 ------------------------------------------------------------
consensus_10944#0 TCCTCGAACTGCTTAACGAACTCCTCCATCATCGCATCGTCATCCAGCCCCGCCATGGCC 882
consensus_10944#3 ------------------------------------------------------------
consensus_10944#1 -
consensus_10944#2 -
consensus_10944#0 C 883
consensus_10944#3 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||