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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1168 fasta sequence
[TAGTCGTCTTCCTACTCTCCTCCGATCTCCAATTCTTATCCAACCCATGGTGCTTGGCTCCCCGGAAGTCGGGATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATCCAGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGAGGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGAGCGCGGTCGGTTTTCTGAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTCTTTCCTTGAGAAGAAAGGGCTCACCGTGGATGAAATCGATGAGGCATTTCGACGTTTACTTAGCCCATCTTCAAACTCCATGAGTCCAAATTATTGCACATATCAAGGGGTATCTGATCATTCTTCAAAAATCACACAGGAGAATCCTTCAACAGTTACAAAATGTATGGATGATGATTCAGGGAGACCTGAGCCTGAAACTGAATCTGTGGAT-CCTGTGGTGCCTCGCCACCCAAAATCATATATGGAGATCATGGAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGACATTAATGATGACCCTCCAAACCCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCA-AGCCATGGGAAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCGAATCGAGATCAGAAATTCAACTTGACAGCG-CCAACCAATTTACTGAAAC-GGAGAATAGATCAAATCAAGGGGACTCACTATTGCTGGAAGAAACGGTTGCAGGTTCTGAAGCTCACACAGATGATGCTGCCTCGACAAAGTCGTAAATGCAAAAGCACGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTCTA-GTGCAACAGTTTTCTGAAATTCTCTGAACCTGCTTTCTCTGAGCTCACTGATCTGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCACAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACAATCTGTATAATGTAATCATGAAAAATATACAAACAACAACATGAAATGTTGTGACTTGTGAGGCTCATGTCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065040 [TAGTCGTCTTCCTACTCTCCTCCGATCTCCAATTCTTATCCAACCCATGGTGCTTGGCTCCCCGGAAGTCGGGATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATCCAGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGAGGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGAGCGCGGTCGGTTTTCTGAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTCTTTCCTTGAGAAGAAAGGGCTCACCGTGGATGAAATCGATGAGGCATTTCGACGTTTACTTAGCCCATCTTCAAACTCCATGAGTCCAAATTATTGCACATATCAAGGGGTATCTGATCATTCTTCAAAAATCACACAGGAGAATCCTTCAACAGTTACAAAATGTATGGATGATGATTCAGGGAGACCTGAGCCTGAAACTGAATCTGTGGAT CCTGTGGTGCCTCGCCACCCAAAATCATATATGGAGATCATGGAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGACATTAATGATGACCCTCCAAACCCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCA AGCCATGGGAAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCGAATCGAGATCAGAAATTCAACTTGACAGCG CCAACCAATTTACTGAAAC GGAGAATAGATCAAATCAAGGGGACTCACTATTGCTGGAAGAAACGGTTGCAGGTTCTGAAGCTCACACAGATGATGCTGCCTCGACAAAGTCGTAAATGCAAAAGCACGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTCTA GTGCAACAGTTTTCTGAAATTCTCTGAACCTGCTTTCTCTGAGCTCACTGATCTGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCACAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACAATCTGTATAATGTAATCATGAAAAATATACAAACAACAACATGAAATGTTGTGACT ]
[+] EMBL CA766032 [ TTCCTACT CTCCGATCTCCAATTCTTATCCAACCCATGGTGCTTGGCTCCCCGGAAGTCGGGATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATCCAGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGAGGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGAGCGCGGTCGGTTTTCTGAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTCTTTCCTTGAGAAGAAAGGGCTCACCGTGGATGAAATCGATGAGGCATTTCGACGTTTACTTAGCCCATCTTCAAACTCCATGAGTCCAAATTATTGCACATATCAAGGGGTATCTGATCATTCTTCAAAAATCACACAGGAGAATCCTTCAACAGTTACAAAATGTATGGATGATGATTCAGGGAGACCTGAGCCTGAAACTGAATCTGTGGAT CCTGTGGTGCCTCGCCACCCAAAATCATATATGGAGATCATGGAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGACATTAATGATGACCCTCCAAACCCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCA AGCCATGGGAAAAGCAGGGTCAAGAAAGNTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCGAATCGAGATCAGAAATTCAACTTGACAGCGNCCAACCCANTTACTGGAACGGGNGAATAGATCAAATCAAGGGGACTCACTATTGCTGGGANAAACGGTTGCAGGTTCTGNAGCTCACACA ANGAAGCTGNCNCNACAAA TCGTAAATGCAAAAGCCCGNGATGAT ]
[+] EMBL AU068041 [ GGCTCCCCGGAAGTCGGGATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATNCAGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGAGGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGANCGCGGTCGGTTTTCTGAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTC ]
[+] EMBL CF313573 [ ATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATCCAGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGAGGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGAGCGCGGTCGGTTTTCTGAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTCTTTCCTTGAGAAGAAAGGGCTCACCGTGGATGAAATCGATGAGGCATTTCGACGTTTACTTAGCCCATCTTCAAACTCCATGAGTCCAAATTATTGCACATATCAAGGGGTATCTGATCATTCTTCAAAAATCACACAGGAGAATCCTTCAACAGTTACAAAATGTATGGATGATGATTCAGGGAGACCTGAGCCTGAAACTGAATCTGTGGATCCCTGTGGTGCCTCGCCACCCAAAATCATATTGGGAGATCATGGGAAa ]
[+] EMBL AU068042 [ cnCCGCATGGCACCAAAGCCCANAGCCATGGGNAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAANCTCAGTCAATGGACACCATCGAATCGAGATCAGAAATTCAACTTGACAGCG CCAACCAATTTACTGAAAC GGAGAATAGATNAAATCAAGGGGANTCACTATTGCTGGAAGAAACGGTTGCAGGTTCTGAAGCTCACACAGATGATGCTGCCTCGACAAAGTCGTAAATGCAAAAGCACGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTCTA GTGCAACAGTTTTCTGAAATTCTCTGAACCTGCTTTCTCTGAGCTCACTGATCTGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCACAAAAGACCTCCCNATTTTCGTTAGCTGGAACAGTTATACAATCTGTATAATGTAATCATGAAAAATATACAAACAACAACATGAAATGTTGTNACTTGTGAGGCTCATGTCAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF313574 [ CAACTTGACAGCG CCAACCAATTTACTGAAAC GGAGAATAGATCAAATCAAAGGGACTCACTATTGCTGGAAGAAACGGTTGCAGGTTTTTTAGTTCACACAGATGATGCTGCCTCGACAAAGTCGTAAATGCAAAAGCACGTGATGAGGGGATTGAACATGCTGGCCAACTATTTCAACATATACTTAACCAAAAAGCTCGAATTT TATGTGAAACAGTTTTCTGAAATTCTCTGAACCTGCTTTCTCTAAAAAAAAAGATCTGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCACAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACAATCTGTATAATGTAATCATGAAAAATATACAAACAACAACATGAAATGTTGTGACTaaaaaaa ]
consensusID : consensus_10947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence
[GNAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGTATATCTGAGTTTATGCTTGTCAAGTTGACTTTGTGACCTTATCGTTTCTGTTTCAATATAGGACATTAATGATGACCCT-CCAAA-CCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCAAGCCATGGGAAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCGATTCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTACTGAAACGGAGAATANATCAAATCAAGGGGACTCACTATTGCTGGAAAAAACGGTTGCAGGTTCTGAAGCTCACACANATNATGCTGCCTCGACAAAGTTGTAAATGCAAAAGCCCGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTTTAGTGCAACAGTTTTTTGAAATTTTTTGAACCTGCTTTCTTTGAGCTCCCTGATCCGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCCCAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACCATCTGTATAATGTAATCATGAAAAATATACCAACAACAACCTGAGATGTTGTGACTTGTGAGGCTCATGTCATGTTTGAAGTTTGAACCCTTGCATTTGTAACAGACAAGCAAAGATTGCTTGATTGGCTAGAAATAGAATTGTTGAATTTGAGGAAAAAAAAAAAAAAAAAA]
[+] EMBL AA751884 [GNAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGTATATCTGAGTTTATGCTTGTCAAGTTGACTTTGTGACCTTATCGTTTCTGTTTCAATATAGGACATTAATGATGACCCT CCAAA CCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCAAGCCATGGGAAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCGATTCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTACTGAAACGGAGAATANATCAAATCAAGGGGACTCACTATTGCTGGAAAAAACGGTTGCAGGTTCTGAAGCTCACACANATNATGCTGCC ]
[-] EMBL CA761365 [ TAATGGTGACCCTCCCAAACCCTTATCAACCAATCTTGGAATTCCGCATGGCACCAAAGCCCAAGCCATGGGAAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGGCACCATCGAATCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTTCTGAAACGGAGAATAGATCAAATCAAGGGGGCTCCCTATTGCTGGAAGAAACGGTTGCAGGTTTTGAAGCTCACACAGATGATGCTGCCTCGACAAAGTTGTAAATGCAAAAGCCCGTGATGATGGAATTGAACATGCTGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTTTAGTGCAACAGTTTTTTGAAATTTTTTGAACCTGCTTTCTTTGAGCTCCCTGATCCGCGTACTTCCCTATTGTTGGAATCAGATTTAGCAGGCCCAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACCATCTGTATAATGTAATCATGAAAAATATACCAACAACAACCTGAGATGTTGTGACTTGTGAGGCTCATGTCATGTTTGAAGTTTGAACCCTTGCATTTGTAACAGACAAGCAAAGATTGCTTGATTGGCTAGAAATAGAATTGTTGAATTTGAGGAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10947#0 TAGTCGTCTTCCTACTCTCCTCCGATCTCCAATTCTTATCCAACCCATGGTGCTTGGCTC 60
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 CCCGGAAGTCGGGATGGAGGATTCGTCGGCGACTCACCTCTCCGACGAGGTGCAGGATCC 120
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 AGGTCGAGGAAGCTCAGATGCTTCTGTTCGTACTTCTTTGCGAGATTCGACAGGAAAGGA 180
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 GGCTGTTGCGGCCGTTGAACCGGTGAGGGAGGAGCTGGTTCAGAGCGCGGTCGGTTTTCT 240
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 GAAACACCCAAAGGTAGTGGCCTCTTCTGATGTCCAGAGGCGTTCTTTCCTTGAGAAGAA 300
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 AGGGCTCACCGTGGATGAAATCGATGAGGCATTTCGACGTTTACTTAGCCCATCTTCAAA 360
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 CTCCATGAGTCCAAATTATTGCACATATCAAGGGGTATCTGATCATTCTTCAAAAATCAC 420
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 ACAGGAGAATCCTTCAACAGTTACAAAATGTATGGATGATGATTCAGGGAGACCTGAGCC 480
consensus_10947#1 ------------------------------------------------------------
consensus_10947#0 TGAAACTGAATCTGTGGATCCTGTGGTGCCTCGCCACCCAAAATCATATATG---GAGAT 537
consensus_10947#1 -GNAAATGATACAAAGGGGAGAGCGGCCAGATGATATACAGGTATATCTGAGTTTATGCT 59
* ** *** * ** * ** * * ** ** * * * *
consensus_10947#0 CATGGAAATGATACAAAGGGGAGAGCGGC-CAGATGATATACAGGACATTAATGATGACC 596
consensus_10947#1 TGTCAAGTTGACTTTGTGACCTTATCGTTTCTGTTTCAATATAGGACATTAATGATGACC 119
* * *** * * ** * * * *** ******************
consensus_10947#0 CTCCAAACCCTTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCAAGCCATGGG 656
consensus_10947#1 CTCCAAACC-TTATCAACCAATCTCGGAATCCCGCATGGCACCAAAGCCCAAGCCATGGG 178
********* **************************************************
consensus_10947#0 AAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCG 716
consensus_10947#1 AAAAGCAGGGTCAAGAAAGTTCCATCTGGGAGTTGAAATCTCAGTCAATGGACACCATCG 238
************************************************************
consensus_10947#0 AATCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTACTGAAACGGAGAATAGAT 776
consensus_10947#1 ATTCGAGATCAGAAATTCAACTTGACAGCGCCAACCAATTTACTGAAACGGAGAATANAT 298
* ******************************************************* **
consensus_10947#0 CAAATCAAGGGGACTCACTATTGCTGGAAGAAACGGTTGCAGGTTCTGAAGCTCACACAG 836
consensus_10947#1 CAAATCAAGGGGACTCACTATTGCTGGAAAAAACGGTTGCAGGTTCTGAAGCTCACACAN 358
***************************** *****************************
consensus_10947#0 ATGATGCTGCCTCGACAAAGTCGTAAATGCAAAAGCACGTGATGATGGAATTGAACATGC 896
consensus_10947#1 ATNATGCTGCCTCGACAAAGTTGTAAATGCAAAAGCCCGTGATGATGGAATTGAACATGC 418
** ****************** ************** ***********************
consensus_10947#0 TGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTCTAGTGCAACAGTTTT 956
consensus_10947#1 TGGGAAACTATTTCAACATATACTTAGCCAAAAAGCTCGAATTTTTAGTGCAACAGTTTT 478
******************************************** ***************
consensus_10947#0 CTGAAATTCTCTGAACCTGCTTTCTCTGAGCTCACTGATCTGCGTACTTCCCTATTGTTG 1016
consensus_10947#1 TTGAAATTTTTTGAACCTGCTTTCTTTGAGCTCCCTGATCCGCGTACTTCCCTATTGTTG 538
******* * ************** ******* ****** *******************
consensus_10947#0 GAATCAGATTTAGCAGGCACAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACA 1076
consensus_10947#1 GAATCAGATTTAGCAGGCCCAAAAGACCTCCCAATTTTCGTTAGCTGGAACAGTTATACC 598
****************** ****************************************
consensus_10947#0 ATCTGTATAATGTAATCATGAAAAATATACAAACAACAACATGAAATGTTGTGACTTGTG 1136
consensus_10947#1 ATCTGTATAATGTAATCATGAAAAATATACCAACAACAACCTGAGATGTTGTGACTTGTG 658
****************************** ********* *** ***************
consensus_10947#0 AGGCTCATGTCAAAAAAAAAAAAAAAAAAAAA---------------------------- 1168
consensus_10947#1 AGGCTCATGTCATGTTTGAAGTTTGAACCCTTGCATTTGTAACAGACAAGCAAAGATTGC 718
************ ** **
consensus_10947#0 -----------------------------------------------------
consensus_10947#1 TTGATTGGCTAGAAATAGAATTGTTGAATTTGAGGAAAAAAAAAAAAAAAAAA 771
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||