These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 720 fasta sequence [CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCGTGCTCCCCACCGCCAC-TCGCCCGCTCGCTGTCCCCAGATGGCCCCCT-CCCNCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCC-GCCGCCAGTGGCAGCCGCAGG-CGCTCGTCGCCGCCGCCGCCAC-GGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA-GAACAAATCCCAAATTTATT-ATCTGCTAT-GTGATGGCGATGAG-TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAATCCTATCAATC-ATCTTATTCACAGTTACACTAATTTTCTTAAAAAAA] [+] EMBL AU077779 [CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCGTGCTCCCCACCGCCACNTCGCCCGCTCGCTGTCCCCAGATGGCCCCCT CCCNCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCC GCCGCCAGTGGCAGCCGCAGG CGCTCGTCGCCGCCGCCGCCACNGGCCGCCG ] [+] EMBL BI805585 [ GCTTCCGTGCTCCCCACCGCCAC TCGCCCGCTCGCTGTCCCCAGATGGCCCCCTGCCCTCCTCGCCGCCGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCCTGCCGCCAGTGGCAGCCGCAGGCCGCTCGTCGCCGCCGCCGCCAC CGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGC CTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAAC AATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAATATCCTATCAATC ATCTTATTCACAGTTACACTAATTTTCTTAAAAAAA] [+] EMBL AU066220 [ CAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGANATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAA ] [+] EMBL AU066347 [ AAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGANATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTG TTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTANGACCAAATCCCAAATTTATTAATCTGCTATGGTGATGGCGATGAGTTTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGGTTCTAGGGGTATAAATTGGGGCAGCAAAAAa ] [+] EMBL AU223478 [ TACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAA ] [+] EMBL AU174371 [ GGTGGNGCCCCAGTCCGNCCGGGTGCTCGTCCGCCTCGAACAGATTCNTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATNTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAAAA ] [-] EMBL OSC22291 [ AAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTA GAACAAATCCCAAATTTATT ATCTGCTAT GTGATGGCGATGAG TTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAATTGGGACAGCAAATATCCTATCAATCAATCTTATTCA ] consensusID : consensus_10949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA751845 [GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10949#0 CCTCCTCTCCGGCGAACTCNTGCCTCCTCTCCACTTCTTCTAGAACCTTCCGCGCTTCCG 60 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 TGCTCCCCACCGCCACTCGCCCGCTCGCTGTCCCCAGATGGCCCCCTCCCNCCTCGCCGC 120 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 CGCCGCCTCGCCCTTCCTCCTCCACGGCGCCGCCGCCGCCAGTGGCAGCCGCAGGCGCTC 180 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 GTCGCCGCCGCCGCCACGGCCGCCGCGCCGCCTCCTCCCTCCGCGTCGCCGCCCTCAAGT 240 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 ACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTC 300 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 CTGAGAAATCTGTTGGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATT 360 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 TGATGGGTGAGATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGG 420 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 TTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGCACTGCT 480 consensus_10949#1 ------------------------------------------------------------ consensus_10949#0 TCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAG-TTTTTACTCCAAAATCGGAG 539 consensus_10949#1 ----GATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTTTTACTCCAAAATCGGAG 56 * * ** ** * * * * * *** ******************** consensus_10949#0 TGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATG 599 consensus_10949#1 TGTCCAATTCCACAGGCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATG 116 ************************************************************ consensus_10949#0 AGTTGAACAATTTGATATGTCATTCTCTACAAATGAATTTTGGCTTCTAGGAGTATAAAT 659 consensus_10949#1 AGTTGAACAATTTGATATGTCATTCTCTACAAATGAANAAAA------AAAAAAAAAAAA 170 ************************************* * * * *** consensus_10949#0 TGGGACAGCAAAAATCCTATCAATCATCTTATTCACAGTTACACTAATTTTCTTAAAAAA 719 consensus_10949#1 AAAAAAAAAAAAAA---------------------------------------------- 184 * * ***** consensus_10949#0 A 720 consensus_10949#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||