cluster # 10950

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Oryza sativa
cluster # 10950 cluster # 10950 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10950#0 length = 678 sequences # 7

consensus_10950#1 length = 587 sequences # 1

consensusID : consensus_10950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 678
fasta sequence

                              [TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA---TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT-GTATGTACGTG-TTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAAAGCCGGAGACCTTGGGGG]

[+] EMBL CA759372             [TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTCATAAGCTTACAATGGGTGTTGTTTGGGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATCGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA   TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGGTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGGAACACCTTCTTCTTCCCCATCATCCCANGACCCAGGCAGGTGAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGGATGGAACGACCGTG TTCGTTGGTGCTCACTTGCTTGCTTGGTAGGTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAAAGCCGGAGACCTTGGGGG]
[-] EMBL CA764508             [              aTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCGACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA   TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTG TTCGTTGTTGCTCACTTGCTTGCTTGCTAGTT                                                             ]
[+] EMBL BI306574             [                    TCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF315799             [                                      tttTTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTGCAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA   TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTG TTCGTTGTTGCTCACTTGCTTGCTTGCTAGT                                                              ]
[+] EMBL CF315800             [                                     ttttTTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTGCAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA   TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTGTTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTTTGCTATtttcta                                                ]
[+] EMBL OSAA31852            [                                                    AATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACCAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTTAATTCATCTGAACCAATAATTCAGAGCAAGCCA GGCGGGAGTGGAAGGGGAACTGGTACATCAATATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCCTC                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL OSAA31931            [                                                                                                                                                                                                                                                                                                                                    cggCTTCTCCACGCCAGCATGATGATCACCATCCGATCCTCCTCCAATCTTCTTCTTCTCCTCCTCACCAACTTCAGCAGCATGTGCATCCTTCGACTTCGAGCAGTACTGATTCTTCTGCTGCTGATTCTGATCTACAGGT   TGCTGCTGCTGCTTCGCTGGCGACACCTTTTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAAT                                                                                                                               ]




>consensus_10950#0
TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTC
AAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAG
AGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAA
AATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAA
GCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGA
TCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGA
TCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTT
CGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTT
CGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCAC
TTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCAC
TTGCTTGCTTGCTAGTTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAA
AGCCGGAGACCTTGGGGG

consensusID : consensus_10950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [TTTTTTTTTTTTACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTNTGCTATCCCCCT]

[+] EMBL CA759375             [TTTTTTTTTTTTACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTNTGCTATCCCCCT]




>consensus_10950#1
TTTTTTTTTTTTACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTA
CACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAAT
CAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAA
CCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGA
GCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCA
TGATGATCACCATCTGATCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCA
TCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGT
TGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAG
CAGCTCAGACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACG
TGTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTNTGCTATCCCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10950#0      TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTC 60
consensus_10950#1      -------------------------------------------TTTTTTTTTTTTACCTC 17
                                                                    **       ******

consensus_10950#0      AAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAG 120
consensus_10950#1      AAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAG 77
                       ************************************************************

consensus_10950#0      AGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAA 180
consensus_10950#1      AGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAA 137
                       ************************************************************

consensus_10950#0      AATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAA 240
consensus_10950#1      AATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAA 197
                       ****************************************************** *****

consensus_10950#0      GCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGA 300
consensus_10950#1      GCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGA 257
                       **************************** *******************************

consensus_10950#0      TCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGA 360
consensus_10950#1      TCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGA 317
                       ************************************************************

consensus_10950#0      TCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTT 420
consensus_10950#1      TCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTT 377
                       ************************************************************

consensus_10950#0      CGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTT 480
consensus_10950#1      CGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTT 437
                       ************************************************************

consensus_10950#0      CGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCAC 540
consensus_10950#1      CGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCAC 497
                       ************************************************** *********

consensus_10950#0      TTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCAC 600
consensus_10950#1      TTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCAC 557
                       ************************************************************

consensus_10950#0      TTGCTTGCTTGCTAGTTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAA 660
consensus_10950#1      TTGCTTGCTTGCTAGTTNTGCTATCCCCCT------------------------------ 587
                       ***************** ** **** ****                              

consensus_10950#0      AGCCGGAGACCTTGGGGG 678
consensus_10950#1      ------------------