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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 934 fasta sequence
[CTCCTCCTCGAGCCAAGAAACCATCTAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGGATGCCGCCGAA-GGGTGCATGGCGGTGAGGGTGGTGGGGCCCGGCGGCGTGGGCGGCGGCGGAGGAGGAGCGGAGGGAGAGAGGTTCGTGGTGCCGGTGGGTTATCTGAAGCACCCGCTGTTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATCACCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCA-GG-GCATCATCCACCACCAGAAGCACCACCAC-GGCGGCTCCCAT-GGCGCCGGCGGCGCCGGCGCCGG-C-GGCCTCCTCTCC-GGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCC-TGATTGAGATGATCATCAGATGATGATGCAT-GGTGTTTCTTTGGCTA-GC-TTCTCTCTCTCTTAGATCGATGGATTAATAATAC-TT-A-GGG-TTTTAA--TTTCCTTTTGGTTA-GGAATTTA-GTC-ATGGTTTGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCTGTTCAATCAAAACAAAAGATGTTCCCTTTCTTCTTTTTCTTTAAAAAAA]
[+] EMBL AK107043 [CTCCTCCTCGAGCCAAGAAACCATCTAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGGATGCCGCCGAAGGGGTGCATGGCGGTGAGGGTGGTGGGGCCCGGCGGCGTGGGCGGCGGCGGAGGAGGAGCGGAGGGAGAGAGGTTCGTGGTGCCGGTGGGTTATCTGAAGCACCCGCTGTTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATCACCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCA GG GCATCATCCACCACCAGAAGCACCACCAC GGCGGCTCCCAT GGCGCCGGCGGCGCCGGCGCCGG C GGCCTCCTCTCC GGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCC TGATTGAGATGATCATCAGATGATGATGCAT GGTGTTTCTTTGGCTA GC TTCTCTCTCTCTTAGATCGATGGATTAATAATAC TT A GGG TTTTAA TTTCCTTTTGGTTA GGAATTTA GTC ATGGTTTGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGAT ]
[+] EMBL C28702 [ AAGAAACCATCAAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGNGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGGATGNCGCCGAA GGGTGCATGGCGGTGAGGGTGGTG ]
[+] EMBL AU070299 [ CCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGGATGCCGCCGAA GGGTGCATGGCGGTGAGGGTGGTGGGGCCCGGCGGCGTGGGCGGCGGCGGAGGAGGAGCGGAGGGAGAGAGGTTCGTGGTGCCGGTGGGTTATCTGAAGCACCCGCTGTTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATCACCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCAGGG GCATCATCCACCACCAGAAGCACCACCAC GGCGGCTCCCATGGGCGCCGGCGGC CCGGCGCGNG CGGGCCTCCTCTCCGGGCCACGGCTCGTCGGGACACCANAACAACTTCCACATCGCCGCCTGCTTCAGGGCC TTATTGAGATGATCATCAGATGATGATGCAT GGTGTTTCTTTGGCTA NCTTTCTCTCTCTCTTAGATCGATGGATTAATAATACTTT AGGGG TTTTAAATTTTCCTTTTGGGTA GGAATTTANGTCAATGGTTTG ]
[+] EMBL AU070300 [ CCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGGATGCCGCCGAA GGGTGCATGGCGGTGAGGGTGGTGGGGCCCGGCGGCGTGGGCGGCGGCGGAGGAGGAGCGGAGGGAGAGAGGTTCGTGGTGCCGGTGGGTTATCTGAAGCACCCGCTGTTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATCACCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCA GGNGCATCATCCACCACCAGAAGCACCACCACGGGCGGCTCCCAT NGCGCCGGCG GCCGGC CCGGNC GGCCTCCTCTCC GGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTTGATTGAGATGATCATCAGATGATTATGCATGGGTGTTTCTTTGGCTANGT TTCTCTCTCTCTTANATCGATGGATTAATAATAA TTAA GGGTTTTTAA TTTCCTTTTGGGTANGGAA ]
[+] EMBL AU093109 [ CACAACAACTTCCACATCGCCGCCTGCTTCAGGGCC TGATTNAGATGATCATCAGATGATGATGCAT GGTGTTTCTTTGGCTA GC TTCTCTCTCTCTTAGATCGATGGATTAATAATAC TT A GGG TTTTAA TTTCCTTTTGGTTA GGAATTTA GTC ATGGTTTGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCTGTTCAATCAAAACAAAAGATGTTCCCTTTCTTCTTTTTCTTTAAAAAAA]
consensusID : consensus_10953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence
[AACCATCAAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAACGATGGGCGTGCCCTTGCTGAAAAGGCAGCAGTTATCGGCGGCCTCCTCTCCGGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTGATTGAGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAGATCGATGGATTAATAATACTTAGGGTTTTAATTTCCTTTTGGTTAGGAATTTAGTCATGGTTTGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTTTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCT-GTTCAATCAAAACAAAAGATGTTCCCTTTCAAAAAAAAAAAAAAA]
[+] EMBL CA761588 [AACCATCAAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAGATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAACGATGGGCGTGCCCTTGCTGAAAAGGCAGCAGTTATCGGCGGCCTCCTCTCCGGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTGATTGAGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAGATCGATGGATTAATAATACTTAGGGTTTTAATTTCCTTTTGGTTAGGAATTTAGTCATGGTTTGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTTTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCT GTTCAATCAAAACAAAAGATGTTCCCTTTCAAAAAAAAAAAAAAA]
[+] EMBL BI796166 [ caactCCTCCTCTCCGGCCACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTGATTGAGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAGATCGATGGATTAATAATACTTAGGGTTTTAATTTCCTTTTGGTTAGGAATTTAGTCATGGTTTGTGATGATGATC AAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGTTGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTCTCCTAGTTAAGTTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCTGGTTCAATCAAAAAAAAAa ]
consensusID : consensus_10953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence
[AGCGANGCCACCTCACCAGCCGCCATNGAGATCCCNCCGCTCTAACGGCANCTGNTTCTTNCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCNTCGGCNGGGGGCTCGTCGGCNGGGGGAGGGATACCACCGAAGGGTTGCATAGCGGTN]
[+] EMBL C28816 [AGCGANGCCACCTCACCAGCCGCCATNGAGATCCCNCCGCTCTAACGGCANCTGNTTCTTNCTCGTCGTCGGAGCTAGAGATCGATCGACCAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTGCACTTGCTGAAGAGGCAGCAGTCATCGGCNTCGGCNGGGGGCTCGTCGGCNGGGGGAGGGATACCACCGAAGGGTTGCATAGCGGTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10953#0 CTCCTCCTCGAGCCAAGAAACCATCTAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAG 60
consensus_10953#2 ------------------------------AGCGANGCCACCTCACCAGCCGCCATNGAG 30
consensus_10953#1 ------------------AACCATCAAGCTAGCGAGGCCACCTCACCGGCCGCCATGGAG 42
***** *********** ******** ***
consensus_10953#0 ATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGAC 120
consensus_10953#2 ATCCCNCCGCTCTAACGGCANCTGNTTCTTNCTCGTCGTCGGAGCTAGAGATCGATCGAC 90
consensus_10953#1 ATCCCGCCGCTCTAACGGCGGCGCGTTCTTGCTCGTCGTCGGAGCTAGAGATCGATCGAC 102
***** ************* * ***** *****************************
consensus_10953#0 CAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTG 180
consensus_10953#2 CAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAAGGATGGGTGTG 150
consensus_10953#1 CAAGCTAGCGTTTCTTCGATTAGATATAGTCATATCTATATAGGTAGAACGATGGGCGTG 162
************************************************* ****** ***
consensus_10953#0 CACTTGCTGAAGAGGCAGCAGTCATCGGCGTCGGCGGGGGGCTCGTCGGCGGGGGGAGGG 240
consensus_10953#2 CACTTGCTGAAGAGGCAGCAGTCATCGGCNTCGGCNGGGGGCTCGTCGGCNGGGGGAGGG 210
consensus_10953#1 CCCTTGCTGAAAAGGCAGCAGTTATCGGCG------------------------------ 192
* ********* ********** ******
consensus_10953#0 ATGCCGCCGAAGGGT-GCATGGCGGTGAGGGTGGTGGGGCCCGGCGGCGTGGGCGGCGGC 299
consensus_10953#2 ATACCACCGAAGGGTTGCATAGCGGTN--------------------------------- 237
consensus_10953#1 ------------------------------------------------------------
consensus_10953#0 GGAGGAGGAGCGGAGGGAGAGAGGTTCGTGGTGCCGGTGGGTTATCTGAAGCACCCGCTG 359
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 ------------------------------------------------------------
consensus_10953#0 TTCGTGGGGCTCCTCAAGGAGGCCGAGGAGGAGTTCGGGTTCGAGCAGAAGGGCGCCATC 419
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 ------------------------------------------------------------
consensus_10953#0 ACCATCCCCTGCGGCGTCGACCACTTCCGCCGCGTCCAGGGCATCATCCACCACCAGAAG 479
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 ------------------------------------------------------------
consensus_10953#0 CACCACCACGGCGGCTCCCATGGCGCCGGCGGCGCCGGCGCCGGCGGCCTCCTCTCCGGC 539
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 ----------------------------------------------GCCTCCTCTCCGGC 206
consensus_10953#0 CACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTGATTG 599
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 CACGGCTCGTCGGGACACCACAACAACTTCCACATCGCCGCCTGCTTCAGGGCCTGATTG 266
consensus_10953#0 AGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAGAT 659
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 AGATGATCATCAGATGATGATGCATGGTGTTTCTTTGGCTAGCTTCTCTCTCTCTTAGAT 326
consensus_10953#0 CGATGGATTAATAATACTTAGGGTTTTAATTTCCTTTTGGTTAGGAATTTAGTCATGGTT 719
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 CGATGGATTAATAATACTTAGGGTTTTAATTTCCTTTTGGTTAGGAATTTAGTCATGGTT 386
consensus_10953#0 TGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGT 779
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 TGTGATGATGATCAAAAAGGATCATGCATGCATGAGCAGATCTGTCATGCAGCTGCGGGT 446
consensus_10953#0 TGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTCTCTCTCTCTCCTAGTTAAG 839
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 TGTTCTCTGTTCATCCTTATAGGACTCTCTCTCTCTCTCTTTC--------CTAGTTAAG 498
consensus_10953#0 TTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCTGTTCAATCAAAACA 899
consensus_10953#2 ------------------------------------------------------------
consensus_10953#1 TTAGATTGTGATGATGATGATGATGAAAATGGAGATCAAAGGATCTGTTCAATCAAAACA 558
consensus_10953#0 AAAGATGTTCCCTTTCTTCTTTTTCTTTAAAAAAA 934
consensus_10953#2 -----------------------------------
consensus_10953#1 AAAGATGTTCCCTTTCAAAAAAA----AAAAAAAA 589
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||