These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1148 fasta sequence [GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAGCAAAACAAAACTATCCTGAATTT] [+] EMBL AK067222 [GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATT ] [+] EMBL CB659541 [ ATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCGACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGCTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTGTCAATTGCTTGTATCTTCAACTTCTC ] [+] EMBL CB682874 [ AGCCCCAGCCGAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAG ] [+] EMBL CA754021 [ GAGCGAACAGCTTTGCTCGGAATCGCCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGCGCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACTCCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGAGGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCGGCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCACCGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCCTAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGNTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAAC ] [-] EMBL CB659542 [ GAGGATTGCGGCGACGAGAGATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGCAGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACTTAAGGATGAACTATTGCTCCTGACCACAGGAATTGGAGCTGCGTGCAGTTTATACTGTCTCCTAGTCTTTTCTCTGGAGGCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAGCAAAACAAAACTATCCTGAATTT] [+] EMBL BI118694 [ ATTTTTATGAAGAAGAAAGTGAAAAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATAGAGAAGGTGTTGGGTGGTAATTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGC ] [+] EMBL BI118700 [ gTTTTTATGAAGAAGAAAGTGAACAGAATCGGCATAAGAAGCGAGGATTTGAAGAATACAATACAGAAGGTGTTGGGTGGTATTTCAGTAGCTCTTTCGTCTCCAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTCTGAGCTTGTTCCAGGAATGATGGGTGTCTTTGCATACAAGGCTGC ] consensusID : consensus_10954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CGGGGTTCTCTAAGCTCTTTTTAGGGCCGAACCAAGGGGGGGTTTTTAAAATTTTGAAGCCCTATAAGGGTTTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTTTCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGGTGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTTGTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATTTGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAAAAAAAAAA] [-] EMBL CA762389 [CGGGGTTCTCTAAGCTCTTTTTAGGGCCGAACCAAGGGGGGGTTTTTAAAATTTTGAAGCCCTATAAGGGTTTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTTTCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGGTGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTTGTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATTTGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNAAGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAATAGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCCGCTTTGGACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGATGCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAATCAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTATTTTTCTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10954#0 GGCCTCGGCTAATCGGCTTATAGCCAGCCGCAGCCGAGCGAACAGCTTTGCTCGGAATCG 60 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 CCATGGCTATGGGGCTCCCCGGCCTCCGCTGCTGCCGCGGCCTCGACGCCGCGGCCGCGC 120 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 GCCCTCTTCTCGGCCCCGCCCGCGCCCGCGCCTCCCCGCGCGCCTCCGCTCTCCGCTACT 180 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 CCTCCCTCCAAGCTGGGGACAGCCTCGGGGAGGAGGTCCTGCGGATGTTCCTCGCGGAGA 240 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 GGCAGGCGCACGGCGACTTCGTCACCAAGATCTCCGACATGGTCTGGAGGAGGAACGGCG 300 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 GCGACCTCGGCGTGCTAGAGGCGGCGGCGGAACAAGAAAATTCAGCGGATGTCGCACCAC 360 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 CGCAACCTGAAGAAGCTGATGTCATGGGCGAGGGAATGTTGAGGATTGCGGCGACGAGAG 420 consensus_10954#1 ------------------------------------------------------------ consensus_10954#0 ATTGGGTCTCCGGTGAGAGCAGCCTTCCTGTCAGCAAGAGGCTTTCTGCCAAGGATCGGC 480 consensus_10954#1 ------------------------------------CGGGGTTCTCT----AAGCTCTTT 20 * ** * *** * * ** consensus_10954#0 AGGATGAGAGGGAAAGAAGGAAGGAACTCAACCTTCTAAGATATGAAGCACT-TAAGGAT 539 consensus_10954#1 ----TTAGGGCCGAACCAAGGGGGGGTT-----TTTAAAATTTTGAAGCCCTATAAGGGT 71 * ** * ** * * ** * ** ** * ****** ** ***** * consensus_10954#0 GAACTATTG--CTCCTGACCAC--AGGAATTGGAGCTGCGTGC---AGTTTATAC-TGTC 591 consensus_10954#1 TTACCTTTGTGCTCCCTGCCCCCCGGGAAATGGAAGTGCGCGCCCAAGTTTTTTTGTGTT 131 ** *** **** ** * **** **** **** ** ***** * *** consensus_10954#0 TCCTAGTCTTTTCTCTGGAGGCTGCTGTCA-GTTATG-CTTTTGG--AGTTGCTTTCAGT 647 consensus_10954#1 TCCAGGGGGTTTTTTTGGAGGGGCCCGGGAAGTTATGGCTTTTGGGAAGTTGCTTTCAGG 191 *** * *** * ****** * * * ****** ******* ************ consensus_10954#0 TGCTTGTATCTTC--AACTTCTCTATCGG-CACACA-GATAATTTGTCAAAGAAAGA--T 701 consensus_10954#1 TGGTTGGACCCTTCAAATTTCTCCATCGGGCACCCAAGATAATTTGTCAAAAGAAAGGTT 251 ** *** * * * ** ***** ***** *** ** ************** ** * consensus_10954#0 GTTCCAGAAATTTTTAT-GAAGAAGAAAGTGAAAAGAATCGGCAT-AAGAAGCGAGGATT 759 consensus_10954#1 GTTCCAGAAAATTTTATTGAAGAGGAAAGTGAAAAGAATCGGCATTAAGAAGCGAGGATT 311 ********** ****** ***** ********************* ************** consensus_10954#0 TGAAGAATACAATAGAGAA-GGTGTTGGGTGGTATTTC-AGTAGCTC-TTTCGTCTCCAA 816 consensus_10954#1 TGAAGAATCCCATAGAGAAAGGTGTTGGGTGGTATTTCCAGTAGCTCCTTTNGTCTCCNA 371 ******** * ******** ****************** ******** *** ****** * consensus_10954#0 -GGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAAT 875 consensus_10954#1 AGGCTTGTGATACCCGCTATATTTTTTGGATTGTCAACCTTGTCAGATCACTTTCAAAAT 431 *********************************************************** consensus_10954#0 AGCATTTTAAATTTTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCC 935 consensus_10954#1 AGCATTTTGAATTNTGAGCTTGTTCCAGGAATGATGGGTTTCTTTGCATACAAGGCTGCC 491 ******** **** ********************************************** consensus_10954#0 GCTTTGGTACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAGAAGAT 995 consensus_10954#1 GCTTTGG-ACAAGTCTACAGGGACAATGAGGACCTTAGATTGATACTGCCTGAAAAAGAT 550 ******* ********************************************** ***** consensus_10954#0 GCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAAT 1055 consensus_10954#1 GCTGACAGCAGTTGATGTATCAGTAGTGAAGACTTATGTTAATCCAGTTCCTTTATAAAT 610 ************************************************************ consensus_10954#0 CAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTAT 1115 consensus_10954#1 CAAGATAAGAATGATGTATAGATCATATCTCAGCTTTGAATTGAATAAAGTTTCTGTTAT 670 ************************************************************ consensus_10954#0 TTTTCTTCAGCAAAACAAAACTATCCTGAATTT 1148 consensus_10954#1 TTTTCTTCAAAAAAAAAA--------------- 688 ********* **** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||