cluster # 10959

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Oryza sativa
cluster # 10959 cluster # 10959 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10959#0 length = 761 sequences # 6

consensus_10959#1 length = 322 sequences # 1
consensus_10959#2 length = 236 sequences # 1

consensusID : consensus_10959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 761
fasta sequence

                              [TCCCCTTCTCCGTCCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGATGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGGCCACGTGGACCGGGTACCTCCTCTCCCTCGTCGCGCTCCTCCTCGCCTCCGCCTTCTACCAGTACCTCGAGGCGTTCCGGATCCGCGTCAAGCTCCTCGCGGGCGCCAAGCCGGCCTCCATCCCGCCCCCGGCGTCCTCCGACGCCGCGCGGGCCCCGCTCCTCCTCCCCTCGTCCGCCGCCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTGAACTCCGGCCTGGGCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGGTCGTCGGGCTCGCGGCGGGCTACTTGGCGTTCCNCAGCAGCGACGGCGAGGACCTCGTNGTGGTNGACAACCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGNCAAGTAGAAATAAATCTGTGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTNTGTAATTTGGGGGGAAATTGTANAGTACAAAATGAGAAAGCTGCTACTTTTGTGTTTCNAAAAAAAAAAAAAAA]

[+] EMBL AK069588             [TCCCCTTCTCCGTCCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGATGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGGCCACGTGGACCGGGTACCTCCTCTCCCTCGTCGCGCTCCTCCTCGCCTCCGCCTTCTACCAGTACCTCGAGGCGTTCCGGATCCGCGTCAAGCTCCTCGCGGGCGCCAAGCCGGCCTCCATCCCGCCCCCGGCGTCCTCCGACGCCGCGCGGGCCCCGCTCCTCCTCCCCTCGTCCGCCGCCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTGAACTCCGGCCTGGGCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGGTCGTCGGGCTCGCGGCGGGCTACTTGGCGTT                                                                                                                                                                                                                                                             ]
[+] EMBL AK104963             [ CCCCTTCTCCGTCCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGATGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGGCCACGTGGACCGGGTACCTCCTCTCCCTCGTCGCGCTCCTCCTCGCCTCCGCCTTCTACCAGTACCTCGAGGCGTTCCGGATCCGCGTCAAGCTCCTCGCGGGCGCCAAGCCGGCCTCCATCCCGCCCCCGGCGTCCTCCGACGCCGCGCGGGCCCCGCTCCTCCTCCCCTCGTCCGCCGCCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTGAACTCCGGCCTGGGCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGGTCGTCGGGCTCGCGGCGGGCTACTTGGCGTT                                                                                                                                                                                                                                                             ]
[+] EMBL OSR23831A            [             CCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGATGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGGCCACGTGGACCGGGTACCTNCTCTNCCTCGTCGCGCTCCTNCTCGACTCCGNCTTCTACCAGTACCTCGAGGNGTTCCGGATCCGCGTCAAGNTCCTNGCGGGNGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU070214             [              CAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGATGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGGCCACGTGGACCGGGTACCTNCTCTCCCTCGTCGCGCTCCTNCTCGCCTCCGNCTTCTACCAGTACCTCGAGGCGTTCCGGATCCGCGTCAAGTTCCTCGCGGGCGCCAAGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU184748             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGGGGTGTTNGTCGCCGTGGTNGTCGGGCTCGCGGCGGGCTACTTGGCGTTCCNCAGCAGCGACGGCGAGGACCTCGTNGTGGTNGACAACCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGNCAAGTAGAAATAAATCTGTGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTNTGTAATTTGGGGGGAAATTGTANAGTACAAAATGAGAAAGCTGCTACTTTTGTGTTTCNAAAAAAAAAAAAAAA]
[+] EMBL AU173351             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCGCCTGCGCCTAGGGTTTGGCTTTNCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGACAAGTANAAATAAATCTGTGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTNTGTAATTTGGGGGGAAATTGTAGAGTACAAAATNAGAAAGCTGCTACTTTTGTGTTTCCAAAAAAAAAAAAAAA]




>consensus_10959#0
TCCCCTTCTCCGTCCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCC
TCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGA
TGCACATGACCTTCTACTGGGGGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGACGG
CCACGTGGACCGGGTACCTCCTCTCCCTCGTCGCGCTCCTCCTCGCCTCCGCCTTCTACC
AGTACCTCGAGGCGTTCCGGATCCGCGTCAAGCTCCTCGCGGGCGCCAAGCCGGCCTCCA
TCCCGCCCCCGGCGTCCTCCGACGCCGCGCGGGCCCCGCTCCTCCTCCCCTCGTCCGCCG
CCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTGAACTCCGGCCTGG
GCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGGTCG
TCGGGCTCGCGGCGGGCTACTTGGCGTTCCNCAGCAGCGACGGCGAGGACCTCGTNGTGG
TNGACAACCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTC
CTCTGTTTGGTTTCCCGATCTTGTATGNCAAGTAGAAATAAATCTGTGTACAAATTCAAT
TGCGTGACAGGGGGATTCCGGTGTTTNTGTAATTTGGGGGGAAATTGTANAGTACAAAAT
GAGAAAGCTGCTACTTTTGTGTTTCNAAAAAAAAAAAAAAA

consensusID : consensus_10959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [CCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGACAAGTAGAAATAAATCTGTGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTCTGTAATTTGGGGGGAAATTGTAGAGTACAAAATGAGAAAGCTGCTACTTTTGTGTTTCCAACCAATTGATGCATTGATGCCTTTGTGAATGAGGAATGGATAAAGATGACTTAGATCAAATTGAGGAATTAAAAAAAAAAATAATATTAATTATAAAATAAATTAAAAATAATATTTATAAA]

[+] EMBL CA758613             [CCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGACAAGTAGAAATAAATCTGTGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTCTGTAATTTGGGGGGAAATTGTAGAGTACAAAATGAGAAAGCTGCTACTTTTGTGTTTCCAACCAATTGATGCATTGATGCCTTTGTGAATGAGGAATGGATAAAGATGACTTAGATCAAATTGAGGAATTAAAAAAAAAAATAATATTAATTATAAAATAAATTAAAAATAATATTTATAAA]




>consensus_10959#1
CCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGGCTCCTCTGTT
TGGTTTCCCGATCTTGTATGACAAGTAGAAATAAATCTGTGTACAAATTCAATTGCGTGA
CAGGGGGATTCCGGTGTTTCTGTAATTTGGGGGGAAATTGTAGAGTACAAAATGAGAAAG
CTGCTACTTTTGTGTTTCCAACCAATTGATGCATTGATGCCTTTGTGAATGAGGAATGGA
TAAAGATGACTTAGATCAAATTGAGGAATTAAAAAAAAAAATAATATTAATTATAAAATA
AATTAAAAATAATATTTATAAA

consensusID : consensus_10959#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [AAACTACCCGCCCCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGTCGTCGCCGTCGTCGTAGTAGCAGTCACTCCGTCGGAGCACCATGATGCACATGACCTTTTACTGGGGGAAGGTCGTGACGATCCTGTTTGACGGTTGGTGGTCGGTTCACGCGATCCTGACTCATTTTTTTTCTTGTCATGCCCCTTTTTCCCTTCTTCTTTTCCTTTTCTTTTACCGATTCCTT]

[+] EMBL CA757045             [AAACTACCCGCCCCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGTCGTCGCCGTCGTCGTAGTAGCAGTCACTCCGTCGGAGCACCATGATGCACATGACCTTTTACTGGGGGAAGGTCGTGACGATCCTGTTTGACGGTTGGTGGTCGGTTCACGCGATCCTGACTCATTTTTTTTCTTGTCATGCCCCTTTTTCCCTTCTTCTTTTCCTTTTCTTTTACCGATTCCTT]




>consensus_10959#2
AAACTACCCGCCCCCGCTCCCAATCCGGCGAGATCACCAAACCCCTCTCGTCGTCGCCGT
CGTCGTAGTAGCAGTCACTCCGTCGGAGCACCATGATGCACATGACCTTTTACTGGGGGA
AGGTCGTGACGATCCTGTTTGACGGTTGGTGGTCGGTTCACGCGATCCTGACTCATTTTT
TTTCTTGTCATGCCCCTTTTTCCCTTCTTCTTTTCCTTTTCTTTTACCGATTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10959#0      TCCCCTTCTCCGTCCAAACTACCCGCCTCCGCTCCCAATCCGGCGAGATCACCAAACCCC 60
consensus_10959#2      ---------------AAACTACCCGCCCCCGCTCCCAATCCGGCGAGATCACCAAACCCC 45
consensus_10959#1      -------------------CCCCTGCGCCTGCGCCTAGG--GTTTGGCTTTGCGGCTGCC 39
                                            ** **  * ** ** *    *    * *   *     **

consensus_10959#0      TCTCGCCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGTCACTCCGCCGGAGCACCATGA 120
consensus_10959#2      TCTCGTCGTCGCCGTCGTCGT---------AGTAGCAGTCACTCCGTCGGAGCACCATGA 96
consensus_10959#1      CCCAGGTGTGGCTCCTCTGTTTGGTTTCCCGATCTTGTATGACAAGTAGAAATAAATCTG 99
                        *  *  *   *                                 *  * *  *      

consensus_10959#0      TGCACATGACCTTCTACTGGG--GGAAGGACGTGACGATCCTGTTTGACGGCTGGCGGAC 178
consensus_10959#2      TGCACATGACCTTTTACTGGG--GGAAGGTCGTGACGATCCTGTTTGACGGTTGGTGGTC 154
consensus_10959#1      TGTACAAATTCAATTGCGTGACAGGGGGATTCCGGTGTTTCTGTAATTTGGGGGGAAATT 159
                       ** ***    *   * *  *   **  *     *  * * ****     **  **     

consensus_10959#0      GGC-CACGTGGACCGGGTACCTCCTCTCCCTCGTCGCGCTCCTCCTCGCCTCCGCCTTCT 237
consensus_10959#2      GGTTCACGCGATCCTGACTCATTTTTTTTCTTGTCATGCCCCTTTTTCCCTTCTTCTTTT 214
consensus_10959#1      GTAGAGTACAAAATGAGAAAGCTGCTACTTTTGTGTTTCCAACCAATTGATGCATTGATG 219
                       *                             * **    *           * *       

consensus_10959#0      ACCAGTACCTCGAGGCGTTCCGGATCCGCGTCAAGCTCCTCGCGGGCGCCAAGCCGGCCT 297
consensus_10959#2      -CCTTTTCTTTTACCGATTCCTT------------------------------------- 236
consensus_10959#1      CCTTTGTGAATGAGGAATGGATAAAGATGACTTAGATCAAATTGAGGAATTAAAAAAAAA 279
                        *          *    *                                          

consensus_10959#0      CCATCCCGCCCCCGGCGTCCTCCGACGCCGCGCGGGCCCCGCTCCTCCTCCCCTCGTCCG 357
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      AATAATATTAATTATAAAATAAATTAAAAATAATATTTATAAA----------------- 322
                                                                                   

consensus_10959#0      CCGCCGGACGCTGGCCGGCGCGGCTGGCGACGGCCGGGCTGTTCGGGGTGAACTCCGGCC 417
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      TGGGCTACCTCCTCATGCTCGCCGTCATGTCGTTCAACGGCGGGGTGTTCGTCGCCGTGG 477
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      TCGTCGGGCTCGCGGCGGGCTACTTGGCGTTCCNCAGCAGCGACGGCGAGGACCTCGTNG 537
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      TGGTNGACAACCCCTGCGCCTGCGCCTAGGGTTTGGCTTTGCGGCTGCCCCCAGGTGTGG 597
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      CTCCTCTGTTTGGTTTCCCGATCTTGTATGNCAAGTAGAAATAAATCTGTGTACAAATTC 657
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      AATTGCGTGACAGGGGGATTCCGGTGTTTNTGTAATTTGGGGGGAAATTGTANAGTACAA 717
consensus_10959#2      ------------------------------------------------------------
consensus_10959#1      ------------------------------------------------------------
                                                                                   

consensus_10959#0      AATGAGAAAGCTGCTACTTTTGTGTTTCNAAAAAAAAAAAAAAA 761
consensus_10959#2      --------------------------------------------
consensus_10959#1      --------------------------------------------