These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGATTGCTGCCTATAATGAATAGTATGCAGCTTTTTTTGGGCTATGTTGATGGATATGATCAATATATAATATGCTATATATTTTTATGTTTACACGTTTGGGTTATATACCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAGCTCCGGCTATATACACACCAGATATGTATCTAGACATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA] [+] EMBL BI808999 [AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGATTGCTGCCTATAATGAATAGTATGCAGCTTTTTTTGGGCTATGTTGATGGATATGATCAATATATAATATGCTATATATTTTTATGTTTACACGTTTGGGTTATATACCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAGCTCCGGCTATATACACACCAGATATGTATCTAGACATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA] consensusID : consensus_1096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [TGGATTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGATATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA] [+] EMBL BI808341 [TGGATTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGATATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1096#0 AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGA 60 consensus_1096#1 --------------------------------------------------------TGGA 4 **** consensus_1096#0 TTG--CTGCCTATA-ATGAATAGT--ATGCAGC---TTTTTTTGGGCTATGTTG-ATGGA 111 consensus_1096#1 TTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGA 64 ** ********* ** **** ** **** ********* **** *** ***** consensus_1096#0 TATGATCAATATATAATA----TGCTATATATTTTTATGTTTACACGTTTGGGTTATATA 167 consensus_1096#1 TATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGG-TTATATA 123 *** *** * **** *** ********* **** ** ********** ******* consensus_1096#0 CCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCT 227 consensus_1096#1 CCATCTCTATGG-TCTCTGCTCTTAACACAT-ATGTAATAATCTCTT---CCCTCCCTCT 178 ************ ****************** ************ * ** ****** consensus_1096#0 CCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAA 287 consensus_1096#1 CCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAA 238 ************************************************************ consensus_1096#0 -GCTCCGGCTATATACACACCAGATATGTATCTAGA-CATATCTGATAAATTCGTCGACA 345 consensus_1096#1 AGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA 298 ******************* *************** *********************** consensus_1096#0 ATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA 391 consensus_1096#1 ATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA----------- 333 *************************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||