cluster # 1096

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Oryza sativa
cluster # 1096 cluster # 1096 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1096#0 length = 391 sequences # 1

consensus_1096#1 length = 333 sequences # 1

consensusID : consensus_1096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGATTGCTGCCTATAATGAATAGTATGCAGCTTTTTTTGGGCTATGTTGATGGATATGATCAATATATAATATGCTATATATTTTTATGTTTACACGTTTGGGTTATATACCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAGCTCCGGCTATATACACACCAGATATGTATCTAGACATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA]

[+] EMBL BI808999             [AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGATTGCTGCCTATAATGAATAGTATGCAGCTTTTTTTGGGCTATGTTGATGGATATGATCAATATATAATATGCTATATATTTTTATGTTTACACGTTTGGGTTATATACCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAGCTCCGGCTATATACACACCAGATATGTATCTAGACATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA]




>consensus_1096#0
AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGA
TTGCTGCCTATAATGAATAGTATGCAGCTTTTTTTGGGCTATGTTGATGGATATGATCAA
TATATAATATGCTATATATTTTTATGTTTACACGTTTGGGTTATATACCATCTCTATGGG
TCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCTCCGATCGGTTATT
ATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAGCTCCGGCTATAT
ACACACCAGATATGTATCTAGACATATCTGATAAATTCGTCGACAATAAAAAAAATGGAT
GGTATTACGTAATTATGTTTGTTTTTAAAAA

consensusID : consensus_1096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TGGATTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGATATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA]

[+] EMBL BI808341             [TGGATTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGATATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGGTTATATACCATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA]




>consensus_1096#1
TGGATTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGA
TGGATATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGGTTAT
ATACCATCTCTATGGTCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCC
GATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAAAG
CTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAAT
AAAAAAAATGGATGGTATTACGTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1096#0      AGCCCCCAGGTTGCGAGGAGTCTGGTGCAACTAAGCTAAGATCAAGCATCGCCTGGTGGA 60
consensus_1096#1      --------------------------------------------------------TGGA 4
                                                                              ****

consensus_1096#0      TTG--CTGCCTATA-ATGAATAGT--ATGCAGC---TTTTTTTGGGCTATGTTG-ATGGA 111
consensus_1096#1      TTTGCCTGCCTATAGATAAATAAGTAATCCAGCCTTTTTTTTTGGCCTATTTTGGATGGA 64
                      **   ********* ** ****    ** ****   ********* **** *** *****

consensus_1096#0      TATGATCAATATATAATA----TGCTATATATTTTTATGTTTACACGTTTGGGTTATATA 167
consensus_1096#1      TATTATCCACATATTATAATATTGCTATATAGTTTTTATTTAACACGTTTGG-TTATATA 123
                      *** *** * **** ***    ********* ****   ** ********** *******

consensus_1096#0      CCATCTCTATGGGTCTCTGCTCTTAACACATGATGTAATAATCTGCTTGCCCTGCCCTCT 227
consensus_1096#1      CCATCTCTATGG-TCTCTGCTCTTAACACAT-ATGTAATAATCTCTT---CCCTCCCTCT 178
                      ************ ****************** ************  *   **  ******

consensus_1096#0      CCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAA 287
consensus_1096#1      CCGATCGGTTATTATTGTAAGAGTACTACACTATCGTTGGGTGAGGATATGTGAAAGCAA 238
                      ************************************************************

consensus_1096#0      -GCTCCGGCTATATACACACCAGATATGTATCTAGA-CATATCTGATAAATTCGTCGACA 345
consensus_1096#1      AGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA 298
                       ******************* *************** ***********************

consensus_1096#0      ATAAAAAAAATGGATGGTATTACGTAATTATGTTTGTTTTTAAAAA 391
consensus_1096#1      ATAAAAAAAATGGATGGTATTACGTAAAAAAAAAA----------- 333
                      ***************************  *