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Oryza sativa
cluster # 10963 cluster # 10963       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10963#0 length = 1869 sequences # 4  
consensus_10963#1 length = 1432 sequences # 2  
consensus_10963#2 length = 677 sequences # 1  
consensus_10963#3 length = 220 sequences # 1  

consensusID : consensus_10963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1869
fasta sequence
                              [GCTTCTCTTCTCTCCTCTCCTCTCACGCACACAGCACAGCACACTCATCTCCTCTTCCTCCCGATCGCTACCACCTCCTCTCCAGCTCACACCCACCCCCCACGCAAATCTAGAACCTTCTGGATCCGCCGCTTCCTCGATCCGATCGCCTCCCCCGCCGCCCGCCCGATCGGATCCCCAAGGGTTTCCGGTTTGCCGCCCCCGCGATTTAGATGGTTTACGATGGCGCCGTGAAGGACCAGGAGAGCTCGGCTAACCCGGCGTCGGCATCGGCTGCTCTGTCGGAGGCATCGGCGGCGGCGTCGGAGGTAACAGCGGCTGCCGCGGCGGGGGCGGGGGCTGGGGCGGCGGAGGAGGGGGCGGCTGTGAGTGGGCGACCGCCGAGGCCTCCCCACGACAAGCGGCTCGGCGTGCGGCATCCCTTGAAGCACCGCAGGTTCCGCGCCGGGGGGAAGGTGATGGTGGAGCCCGGGGATCCGCCGTCCGCCCAGGAGGTGGCGGATGAGGAGGCCAGCGAGGTGGAGCAGGAGGCGGCGCCGGTGGAGAGGGAACCACCACAGGAGGAGGGTGGTGATGTAGAGGTGTCGTCTGCACCGGCAGAGATGGAGGTGGTGGAGGGGGATGCAATGGAGGTGTCACCTGAGCCAGCAGTGGCTGTGGGGGAGTCGGAGTTGGAAGGCCGACCAGGCGAGGAGGAGGAGGTGTCCTCGCCTGTGGTTTCTCAAGGGGAGAGGAAGCAGGAGACTGCTGCTGCTGCTCCTGTGCCAGCAGTGGAGGAGAAGAAACACAAGGATCAAGAGAATAAGCACAAAGAGAGGGAAAGGGAGAAGGAGAGAGAGAGGGTGGATGAAGTGGGCTACATGAGTGGTGGATGGAAGAGTGAGGATGGATTTCTGAGTTGTGGATATTCGAGTTTTAGAGGAAAAAGAGCAAGCATGGAAGACTTCTATGATATAAAATCATCTAAAATTGATGATAAACAAATAAGCCTCTTTGGAATATTTGATGGTCATGGTGGTTCACGTGCTGCTGAGTATTTGAAGGAGCACTTGTTTGAGAACCTCATGAAACATCCAGAGTTCATGACAAATACAAAATTAGCAATAAGCGAAACATATAAAAAAACTGATTCAGAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCA-ACCGCATCGACAGCGGTTTTGGTTGGAAATCATCTCTATGTGGCAAATGTTGGCGACTCTCGTGCTGTAATATCAAAGGCTGGCAAAGCTATTGCACTCTCTGAGGATCACAAGCCAAATAGAAGCGATGAGAGGAAGCGAATTGAGAGTGCTGGTGGGGTTGTTATGTGGGCTGGAACTTGGAGGGTAGGTGGTGTACTTGCAATGTCTCGGGCATTTGGCAACCGCTTGTTGAAGCAATTTGTTGTTGCAGATCCTGAGATTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACATGCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCAACAAGCGATAAAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACTTCAGCTGGATTTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTAAAGACTCGCTTCATGTTCGCCTGTCTATATATCCCTAATTTTGGTGCCTCTGGTGGTTTACAAGTTGGTATTGCTATCTATACTT]

[+] EMBL AK101645             [GCTTCTCTTCTCTCCTCTCCTCTCACGCACACAGCACAGCACACTCATCTCCTCTTCCTCCCGATCGCTACCACCTCCTCTCCAGCTCACACCCACCCCCCACGCAAATCTAGAACCTTCTGGATCCGCCGCTTCCTCGATCCGATCGCCTCCCCCGCCGCCCGCCCGATCGGATCCCCAAGGGTTTCCGGTTTGCCGCCCCCGCGATTTAGATGGTTTACGATGGCGCCGTGAAGGACCAGGAGAGCTCGGCTAACCCGGCGTCGGCATCGGCTGCTCTGTCGGAGGCATCGGCGGCGGCGTCGGAGGTAACAGCGGCTGCCGCGGCGGGGGCGGGGGCTGGGGCGGCGGAGGAGGGGGCGGCTGTGAGTGGGCGACCGCCGAGGCCTCCCCACGACAAGCGGCTCGGCGTGCGGCATCCCTTGAAGCACCGCAGGTTCCGCGCCGGGGGGAAGGTGATGGTGGAGCCCGGGGATCCGCCGTCCGCCCAGGAGGTGGCGGATGAGGAGGCCAGCGAGGTGGAGCAGGAGGCGGCGCCGGTGGAGAGGGAACCACCACAGGAGGAGGGTGGTGATGTAGAGGTGTCGTCTGCACCGGCAGAGATGGAGGTGGTGGAGGGGGATGCAATGGAGGTGTCACCTGAGCCAGCAGTGGCTGTGGGGGAGTCGGAGTTGGAAGGCCGACCAGGCGAGGAGGAGGAGGTGTCCTCGCCTGTGGTTTCTCAAGGGGAGAGGAAGCAGGAGACTGCTGCTGCTGCTCCTGTGCCAGCAGTGGAGGAGAAGAAACACAAGGATCAAGAGAATAAGCACAAAGAGAGGGAAAGGGAGAAGGAGAGAGAGAGGGTGGATGAAGTGGGCTACATGAGTGGTGGATGGAAGAGTGAGGATGGATTTCTGAGTTGTGGATATTCGAGTTTTAGAGGAAAAAGAGCAAGCATGGAAGACTTCTATGATATAAAATCATCTAAAATTGATGATAAACAAATAAGCCTCTTTGGAATATTTGATGGTCATGGTGGTTCACGTGCTGCTGAGTATTTGAAGGAGCACTTGTTTGAGAACCTCATGAAACATCCAGAGTTCATGACAAATACAAAATTAGCAATAAGCGAAACATATAAAAAAACTGATTCAGAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCA ACCGCATCGACAGCGGTTTTGGTTGGAAATCATCTCTATGTGGCAAATGTTGGCGACTCTCGTGCTGTAATATCAAAGGCTGGCAAAGCTATTGCACTCTCTGAGGATCACAAGCCAAATAGAAGCGATGAGAGGAAGCGAATTGAGAGTGCTGGTGGGGTTGTTATGTGGGCTGGAACTTGGAGGGTAGGTGGTGTACTTGCAATGTCTCGGGCATTTGGCAACCGCTTGTTGAAGCAATTTGTTGTTGCAGATCCTGAGATTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACATGCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCAACAAGCGATAAAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACTTCAGCTGGATTTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTAAAGACTCGCTTCATGTTCGCCTGTCTATATATCCCTAATTTTGGTGCCTCTGGTGGTTTACAAGTTGGTATTGCTATCTATACTT]
[+] EMBL OSR1982A             [                                                                                                  CCCACGCAAATCTAGAACCTTCTGGATCCGCCGCTTCCTCGATCCGATCGCCTCCCCCGCCGCCCGCCCGATCGGATCCCCAAGGGTTTCCGGTTTGCCGCCCCCGCGATTTAGATGGTTTACGATGGCGCCGTGAAGGACCAGGAGAGCTCGGCTAACCCGGCGTCGGCATCGGCTGCTCTGTCGGAGGCATCGGCGGCGGCGTCGGAGGTAACAGCGGCTGCCGNGGCGGGGGCGGNGGCTNGGGCGGCGGAGGAGGGGGCGGCTGTAAGTTGGCGACCGCCGAGGCCTNCCCACGACAAGCGGCTCGGCGTGCGGNATCCCTTGAAGCACCG AAGTTCCGNGCCGGGGGGAAGGT ATGGTNGAGCCCGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CA763683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATAGAGATGATGGATCANCCCGCATCGANAGCGGTTTTGGTTGGAAATCATCTCTATGTGGCAAATGTTGGCGACTCTCGTGCTGTAATATCAAAGGCTGGCAAAGCTATTGCACTCTTTGAGGATCACAAGCCAAATAGAAGCGATGAGAGGAAGCGAATTGAGAGTGCTGGTGGGGTTGTTATGTGGGCTGGAACTTGGAGGGTAGGTGGTGTACTTGCAATGTCTCGGGCATTTGGCAACCGCTTGTTGAAGCAATTTGTTGTTGCAGATCCTGAGATTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACATGCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCAACAAGCGATAAAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACTTCAGCTGGATTTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTGAAGACTCGCTTCATGTTCGCCTGTCTATATATCCCTAATTTTGGTGCCaa                                   ]
[+] EMBL AU173277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGTGGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACATGCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCAACAAGCGATAAAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACTTCAGCTGGATTTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTAAAGACTCGCTTCATGTTCGCCTGTCTATATATCCCTAATTTTGGTGCCTCTGGTGGTTTACAAGTTGGTATTGCTATCaaaaaa ]


>consensus_10963#0 GCTTCTCTTCTCTCCTCTCCTCTCACGCACACAGCACAGCACACTCATCTCCTCTTCCTC CCGATCGCTACCACCTCCTCTCCAGCTCACACCCACCCCCCACGCAAATCTAGAACCTTC TGGATCCGCCGCTTCCTCGATCCGATCGCCTCCCCCGCCGCCCGCCCGATCGGATCCCCA AGGGTTTCCGGTTTGCCGCCCCCGCGATTTAGATGGTTTACGATGGCGCCGTGAAGGACC AGGAGAGCTCGGCTAACCCGGCGTCGGCATCGGCTGCTCTGTCGGAGGCATCGGCGGCGG CGTCGGAGGTAACAGCGGCTGCCGCGGCGGGGGCGGGGGCTGGGGCGGCGGAGGAGGGGG CGGCTGTGAGTGGGCGACCGCCGAGGCCTCCCCACGACAAGCGGCTCGGCGTGCGGCATC CCTTGAAGCACCGCAGGTTCCGCGCCGGGGGGAAGGTGATGGTGGAGCCCGGGGATCCGC CGTCCGCCCAGGAGGTGGCGGATGAGGAGGCCAGCGAGGTGGAGCAGGAGGCGGCGCCGG TGGAGAGGGAACCACCACAGGAGGAGGGTGGTGATGTAGAGGTGTCGTCTGCACCGGCAG AGATGGAGGTGGTGGAGGGGGATGCAATGGAGGTGTCACCTGAGCCAGCAGTGGCTGTGG GGGAGTCGGAGTTGGAAGGCCGACCAGGCGAGGAGGAGGAGGTGTCCTCGCCTGTGGTTT CTCAAGGGGAGAGGAAGCAGGAGACTGCTGCTGCTGCTCCTGTGCCAGCAGTGGAGGAGA AGAAACACAAGGATCAAGAGAATAAGCACAAAGAGAGGGAAAGGGAGAAGGAGAGAGAGA GGGTGGATGAAGTGGGCTACATGAGTGGTGGATGGAAGAGTGAGGATGGATTTCTGAGTT GTGGATATTCGAGTTTTAGAGGAAAAAGAGCAAGCATGGAAGACTTCTATGATATAAAAT CATCTAAAATTGATGATAAACAAATAAGCCTCTTTGGAATATTTGATGGTCATGGTGGTT CACGTGCTGCTGAGTATTTGAAGGAGCACTTGTTTGAGAACCTCATGAAACATCCAGAGT TCATGACAAATACAAAATTAGCAATAAGCGAAACATATAAAAAAACTGATTCAGAGTTTT TGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGACAGCGGTTTTGG TTGGAAATCATCTCTATGTGGCAAATGTTGGCGACTCTCGTGCTGTAATATCAAAGGCTG GCAAAGCTATTGCACTCTCTGAGGATCACAAGCCAAATAGAAGCGATGAGAGGAAGCGAA TTGAGAGTGCTGGTGGGGTTGTTATGTGGGCTGGAACTTGGAGGGTAGGTGGTGTACTTG CAATGTCTCGGGCATTTGGCAACCGCTTGTTGAAGCAATTTGTTGTTGCAGATCCTGAGA TTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGTGATGGGCTGT GGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAGGAACCTGAGG CAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGACAATATCACAT GCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCAACAAGCGATA AAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACTTCAGCTGGAT TTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTAAAGACTCGCTTCATGT TCGCCTGTCTATATATCCCTAATTTTGGTGCCTCTGGTGGTTTACAAGTTGGTATTGCTA TCTATACTT



consensusID : consensus_10963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1432
fasta sequence
                              [CGTCTCGCTCCCATCCCTCCCTCCCCCGCGTCCAGCTCAGAGATGAGCTCTCCCACCTGTACGCGCGAATCTAGAACCTTCTAGATCCTCTCCCCTTCCCGATCCGCCCGCCTCGCCTCGTCTCCCGCCCCACCCCGATCCGATCCCCCGAAGGTCTCGGGGTTGGGGGGGGGGGGGGGCGAATCCTGATGGCGGCGCACGGCGGTGGCGGCGTGGAGGAGGATCAGGCGGGGTCGAGCTCGCTGTGCCCACCTGCTGCGGAGGCAGAGGCGGCGGCTGCGGCGGCGGCGATAGCGAGGGCGGCGCGGCCTCCGAGGCCGGGCAGGGACAAGAGGCTCGGCGTGCGGCACCCGCTGAAGCACCGGAGGTTCCGCGCGGGGGGCAAGGCGGCGGTGGCGGCCGGCGCTAGGGAGGTCGGGGAGGCGACCACCGTGGCGGAGGCGACGGCGACGGGGCCTCCGAAGGGGAGC-GACGAGGATGACGAGGCTAGGTACATTTGCGGCGGATGGACGAGTGATGATGGAAGAATGAGTTGTGGATACTCAAGCTTTAGAGGGAGAAGAGCAAACATGGAAGACTTCTATGACATAAAATCATCAAAAGTTGATGATAACCAAATAAACCTCTTTGGAATATTTGATGGTCATGGTGGTTCACATGCTGCTGAGCATTTAAAGAAGCACTTTGAAAATCTTCTGAAACATCCGTCATTCATCACTGATACAAAATCAGCAATAAGTATGATGTGAGACCTACAGAAAAACTGACTCTGATTTCTTGGATGCTGAGACTAATATTAATAGAGAGGATGGGTCAACTGCATCAACAGCAATTTTCGTTGGTAACCATATCTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGCAAAGCTATTGCACTCTCTAGTGATCACAAACCAAATAGAAAAGATGAGCGGAAACGGATTGAGAATGCTGGAGGGGTTGTGACATGGTCTGGGACATGGAGGGTTGGTGGTGTACTAGCAATGTCTCGGGCTTTTGGTAATCGTTTCTTGAAGCGATTCGTTGTTGCTGAGCCTGAGGTCCAGGAACAAGAAATAGATGATGATTTGGAGTTTCTGATTTTGGCTAGTGATGGGCTGTGGGATGTGGTGTCCAATGAGCATGCCGTTGCATTTGTAAAGGCGGAGGAGGGCCCTGAGGCCGCAGCCCGGAAGCTGGCAGAGATTGCTTTTGCCCGTGGAAGCACCGACAATATAACATGCATCGTTGTAAAATTTCTCCATGCTAAGATGGCCGTAGATGCTGCCTCGTCTAGTGAGCGAAGTTGATTTCTTCTGTTCTATTTCTCTTGTTCATTTTATCATCTTAATCTGGAGTGCTGGCATCAATCACGGTGCAACCTTAACTATTGGGCGTTTATATATTTGTTTGTTC]

[+] EMBL AK102319             [CGTCTCGCTCCCATCCCTCCCTCCCCCGCGTCCAGCTCAGAGATGAGCTCTCCCACCTGTACGCGCGAATCTAGAACCTTCTAGATCCTCTCCCCTTCCCGATCCGCCCGCCTCGCCTCGTCTCCCGCCCCACCCCGATCCGATCCCCCGAAGGTCTCGGGGTTGGGGGGGGGGGGGGGCGAATCCTGATGGCGGCGCACGGCGGTGGCGGCGTGGAGGAGGATCAGGCGGGGTCGAGCTCGCTGTGCCCACCTGCTGCGGAGGCAGAGGCGGCGGCTGCGGCGGCGGCGATAGCGAGGGCGGCGCGGCCTCCGAGGCCGGGCAGGGACAAGAGGCTCGGCGTGCGGCACCCGCTGAAGCACCGGAGGTTCCGCGCGGGGGGCAAGGCGGCGGTGGCGGCCGGCGCTAGGGAGGTCGGGGAGGCGACCACCGTGGCGGAGGCGACGGCGACGGGGCCTCCGAAGGGGAGC GACGAGGATGACGAGGCTAGGTACATTTGCGGCGGATGGACGAGTGATGATGGAAGAATGAGTTGTGGATACTCAAGCTTTAGAGGGAGAAGAGCAAACATGGAAGACTTCTATGACATAAAATCATCAAAAGTTGATGATAACCAAATAAACCTCTTTGGAATATTTGATGGTCATGGTGGTTCACATGCTGCTGAGCATTTAAAGAAGCACTTTGAAAATCTTCTGAAACATCCGTCATTCATCACTGATACAAAATCAGCAATAAGTATGATGTGAGACCTACAGAAAAACTGACTCTGATTTCTTGGATGCTGAGACTAATATTAATAGAGAGGATGGGTCAACTGCATCAACAGCAATTTTCGTTGGTAACCATATCTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGCAAAGCTATTGCACTCTCTAGTGATCACAAACCAAATAGAAAAGATGAGCGGAAACGGATTGAGAATGCTGGAGGGGTTGTGACATGGTCTGGGACATGGAGGGTTGGTGGTGTACTAGCAATGTCTCGGGCTTTTGGTAATCGTTTCTTGAAGCGATTCGTTGTTGCTGAGCCTGAGGTCCAGGAACAAGAAATAGATGATGATTTGGAGTTTCTGATTTTGGCTAGTGATGGGCTGTGGGATGTGGTGTCCAATGAGCATGCCGTTGCATTTGTAAAGGCGGAGGAGGGCCCTGAGGCCGCAGCCCGGAAGCTGGCAGAGATTGCTTTTGCCCGTGGAAGCACCGACAATATAACATGCATCGTTGTAAAATTTCTCCATGCTAAGATGGCCGTAGATGCTGCCTCGTCTAGTGAGCGAAGTTGATTTCTTCTGTTCTATTTCTCTTGTTCATTTTATCATCTTAATCTGGAGTGCTGGCATCAATCACGGTGCAACCTTAACTATTGGGCGTTTATATATTTGTTTGTTC]
[+] EMBL AU182477             [                                                                                                                                                                                                                                                                                                                                             GGCTCGGCGTGCGGCACCCGCTGAAGCACCGGAGGTTCCGCGCGGGGGGCAAGGCGGNGGTGGCGGCCGGCGCTAGGGAGGTCGGGGAGGCGACCACCGTGGCGGAGGCGACGGCGACGGGGCCTCCGAAGGGGAGCNNTTTNGGATGACGAGGCTAGGTACATTTGCGGCGGATGGACGAGTGANGATGGAAGAATGAGNTGTGGATACTCAAGCTTTAGAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_10963#1 CGTCTCGCTCCCATCCCTCCCTCCCCCGCGTCCAGCTCAGAGATGAGCTCTCCCACCTGT ACGCGCGAATCTAGAACCTTCTAGATCCTCTCCCCTTCCCGATCCGCCCGCCTCGCCTCG TCTCCCGCCCCACCCCGATCCGATCCCCCGAAGGTCTCGGGGTTGGGGGGGGGGGGGGGC GAATCCTGATGGCGGCGCACGGCGGTGGCGGCGTGGAGGAGGATCAGGCGGGGTCGAGCT CGCTGTGCCCACCTGCTGCGGAGGCAGAGGCGGCGGCTGCGGCGGCGGCGATAGCGAGGG CGGCGCGGCCTCCGAGGCCGGGCAGGGACAAGAGGCTCGGCGTGCGGCACCCGCTGAAGC ACCGGAGGTTCCGCGCGGGGGGCAAGGCGGCGGTGGCGGCCGGCGCTAGGGAGGTCGGGG AGGCGACCACCGTGGCGGAGGCGACGGCGACGGGGCCTCCGAAGGGGAGCGACGAGGATG ACGAGGCTAGGTACATTTGCGGCGGATGGACGAGTGATGATGGAAGAATGAGTTGTGGAT ACTCAAGCTTTAGAGGGAGAAGAGCAAACATGGAAGACTTCTATGACATAAAATCATCAA AAGTTGATGATAACCAAATAAACCTCTTTGGAATATTTGATGGTCATGGTGGTTCACATG CTGCTGAGCATTTAAAGAAGCACTTTGAAAATCTTCTGAAACATCCGTCATTCATCACTG ATACAAAATCAGCAATAAGTATGATGTGAGACCTACAGAAAAACTGACTCTGATTTCTTG GATGCTGAGACTAATATTAATAGAGAGGATGGGTCAACTGCATCAACAGCAATTTTCGTT GGTAACCATATCTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGC AAAGCTATTGCACTCTCTAGTGATCACAAACCAAATAGAAAAGATGAGCGGAAACGGATT GAGAATGCTGGAGGGGTTGTGACATGGTCTGGGACATGGAGGGTTGGTGGTGTACTAGCA ATGTCTCGGGCTTTTGGTAATCGTTTCTTGAAGCGATTCGTTGTTGCTGAGCCTGAGGTC CAGGAACAAGAAATAGATGATGATTTGGAGTTTCTGATTTTGGCTAGTGATGGGCTGTGG GATGTGGTGTCCAATGAGCATGCCGTTGCATTTGTAAAGGCGGAGGAGGGCCCTGAGGCC GCAGCCCGGAAGCTGGCAGAGATTGCTTTTGCCCGTGGAAGCACCGACAATATAACATGC ATCGTTGTAAAATTTCTCCATGCTAAGATGGCCGTAGATGCTGCCTCGTCTAGTGAGCGA AGTTGATTTCTTCTGTTCTATTTCTCTTGTTCATTTTATCATCTTAATCTGGAGTGCTGG CATCAATCACGGTGCAACCTTAACTATTGGGCGTTTATATATTTGTTTGTTC



consensusID : consensus_10963#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [ATGCTGAGGCTAATATTTATAGAGAGGATGGGTTAAATGCATCAACAGCAATTTTCGGTGGTAACCATATTTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGCAAAACTATTGCACTCTTTAGTGGTCCCCAACCAAATAGAAAAGATTAGCGGAAACGGATTTAGAATGCTGGAGGGGTTGTGACATGGTTTGGGACATGGAGGGTTGGTGGTGTACTAACAATGTTTCGGGCTTTTGGTAATCGTTTTTTGAAACGATTTGTTGTTTCTGAGCCTTAGGTCCCGGAACAAAAAATAGATGATGATTTGGAGTTTTTGATTTTGGCTAATGATGGGCTGTGGGATGTGGTGTTCAATTAGCAAGCCCTTGCCTTTGTAAAGGCGGAGGAGGGCCCTTAGGCCGCAACCCGGAAACTGGCAAAGATTGCTTTTGCCCGTGGAAGCCCCGACAATATAACCTGCATCGTTGTAAAATTTTTCCCTGCTAAAATGGCCGTAGGTGCTGCCTTGTTTGGTGAACGAAATTGATTTTTTCTGTTCTATTTCTCTTGGTCCTTTTATCATTTTAATTTGGAGGGCTGGCATCAATCCCGGTGCAACCTTAACTATTGGGGGGTTATATATTTGTTTGTTCCTTGAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA763071             [ATGCTGAGGCTAATATTTATAGAGAGGATGGGTTAAATGCATCAACAGCAATTTTCGGTGGTAACCATATTTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGCAAAACTATTGCACTCTTTAGTGGTCCCCAACCAAATAGAAAAGATTAGCGGAAACGGATTTAGAATGCTGGAGGGGTTGTGACATGGTTTGGGACATGGAGGGTTGGTGGTGTACTAACAATGTTTCGGGCTTTTGGTAATCGTTTTTTGAAACGATTTGTTGTTTCTGAGCCTTAGGTCCCGGAACAAAAAATAGATGATGATTTGGAGTTTTTGATTTTGGCTAATGATGGGCTGTGGGATGTGGTGTTCAATTAGCAAGCCCTTGCCTTTGTAAAGGCGGAGGAGGGCCCTTAGGCCGCAACCCGGAAACTGGCAAAGATTGCTTTTGCCCGTGGAAGCCCCGACAATATAACCTGCATCGTTGTAAAATTTTTCCCTGCTAAAATGGCCGTAGGTGCTGCCTTGTTTGGTGAACGAAATTGATTTTTTCTGTTCTATTTCTCTTGGTCCTTTTATCATTTTAATTTGGAGGGCTGGCATCAATCCCGGTGCAACCTTAACTATTGGGGGGTTATATATTTGTTTGTTCCTTGAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10963#2 ATGCTGAGGCTAATATTTATAGAGAGGATGGGTTAAATGCATCAACAGCAATTTTCGGTG GTAACCATATTTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCAAAGGCTGGCA AAACTATTGCACTCTTTAGTGGTCCCCAACCAAATAGAAAAGATTAGCGGAAACGGATTT AGAATGCTGGAGGGGTTGTGACATGGTTTGGGACATGGAGGGTTGGTGGTGTACTAACAA TGTTTCGGGCTTTTGGTAATCGTTTTTTGAAACGATTTGTTGTTTCTGAGCCTTAGGTCC CGGAACAAAAAATAGATGATGATTTGGAGTTTTTGATTTTGGCTAATGATGGGCTGTGGG ATGTGGTGTTCAATTAGCAAGCCCTTGCCTTTGTAAAGGCGGAGGAGGGCCCTTAGGCCG CAACCCGGAAACTGGCAAAGATTGCTTTTGCCCGTGGAAGCCCCGACAATATAACCTGCA TCGTTGTAAAATTTTTCCCTGCTAAAATGGCCGTAGGTGCTGCCTTGTTTGGTGAACGAA ATTGATTTTTTCTGTTCTATTTCTCTTGGTCCTTTTATCATTTTAATTTGGAGGGCTGGC ATCAATCCCGGTGCAACCTTAACTATTGGGGGGTTATATATTTGTTTGTTCCTTGAAAAA AAAAAAAAAAAAAAAAA



consensusID : consensus_10963#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [ATTCAGAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGACAGCGTTTGGTTGGAAATCATCTCTATTGGCAAATGTTGGCGACCTCGTGCTGTAATATCAAAGGCTGGCAAACTAATTGCACCCTGAGGATCACAAGCCAAATGAGCGATGAGAGGAAGCGAATTGAGAGTCTCGGTGGTCTGGTGGGTGTATTGGCTG]

[+] EMBL AA750991             [ATTCAGAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGACAGCGTTTGGTTGGAAATCATCTCTATTGGCAAATGTTGGCGACCTCGTGCTGTAATATCAAAGGCTGGCAAACTAATTGCACCCTGAGGATCACAAGCCAAATGAGCGATGAGAGGAAGCGAATTGAGAGTCTCGGTGGTCTGGTGGGTGTATTGGCTG]


>consensus_10963#3 ATTCAGAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGA CAGCGTTTGGTTGGAAATCATCTCTATTGGCAAATGTTGGCGACCTCGTGCTGTAATATC AAAGGCTGGCAAACTAATTGCACCCTGAGGATCACAAGCCAAATGAGCGATGAGAGGAAG CGAATTGAGAGTCTCGGTGGTCTGGTGGGTGTATTGGCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10963#0      GCTTCTCTTCTCTCCTCTCCTCTCACGCACACAGCACAGCACACTCATCTCCTCTTCCTC 60
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CCGATCGCTACCACCTCCTCTCCAGCTCACACCCACCCCCCACGCAAATCTAGAACCTTC 120
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      TGGATCCGCCGCTTCCTCGATCCGATCGCCTCCCCCGCCGCCCGCCCGATCGGATCCCCA 180
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      AGGGTTTCCGGTTTGCCGCCCCCGCGATTTAGATGGTTTACGATGGCGCCGTGAAGGACC 240
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      AGGAGAGCTCGGCTAACCCGGCGTCGGCATCGGCTGCTCTGTCGGAGGCATCGGCGGCGG 300
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CGTCGGAGGTAACAGCGGCTGCCGCGGCGGGGGCGGGGGCTGGGGCGGCGGAGGAGGGGG 360
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------------------------------------------------------------
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CGGCTGTGAGTGGGCGACCGCCGAGGCCTCCCCACGACAAGCGGCTCGGCGTGCGGCATC 420
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ------CGTCTCGCTCCCATCCCTCCCTCCCCCGCGTCCAGCTCAGAGATGAGCTCTCCC 54
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CCTTGAAGCACCGCAGGTTCCGCGCCGGGGGGAAGGTGATGGTGGAGCCCGGGGATCCGC 480
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      ACCTGTACGCGCGAATCTAGAACCTTCTAGATCCTCTCCCCTTCCCGATCCGCCCGCCTC 114
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CGTCCGCCCAGGAGGTGGCGGATGAGGAGGCCAGCGAGGTGGAGCAGGAGGCGGCGCCGG 540
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GCCTCGTCTCCCGCCCCACCCCGATCCGATCCCCCGAAGGTCTCGGGGTTGGGGGGGGGG 174
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      TGGAGAGGGAACCACCACAGGAGGAGGGTGGTGATGTAGAGGTGTCGTCTGCACCGGCAG 600
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GGGGGCGAATCCTGATGGCGGCGCACGGCGGTGGCGGCGTGGAGGAGGATCAGGCGGGGT 234
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      AGATGGAGGTGGTGGAGGGGGATGCAATGGAGGTGTCACCTGAGCCAGCAGTGGCTGTGG 660
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      CGAGCTCGCTGTGCCCACCTGCTGCGGAGGCAGAGGCGGCGGCTGCGGCGGCGGCGATAG 294
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      GGGAGTCGGAGTTGGAAGGCCGACCAGGCGAGGAGGAGGAGGTGTCCTCGCCTGTGGTTT 720
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      CGAGGGCGGCGCGGCCTCCGAGGCCGGGCAGGGACAAGAGGCTCGGCGTGCGGCACCCGC 354
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CTCAAGGGGAGAGGAAGCAGGAGACTGCTGCTGCTGCTCCTGTGCCAGCAGTGGAGGAGA 780
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      TGAAGCACCGGAGGTTCCGCGCGGGGGGCAAGGCGGCGGTGGCGGCCGGCGCTAGGGAGG 414
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      AGAAACACAAGGATCAAGAGAATAAGCACAAAGAGAGGGAAAGGGAGAAGGAGAGAGAGA 840
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      TCGGGGAGGCGACCACCGTGGCGGAGGCGACGGCGACGGGGCCTCCGAAGGGGAGCGACG 474
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      GGGTGGATGAAGTGGGCTACATGAGTGGTGGATGGAAGAGTGAGGATGGATTTCTGAGTT 900
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      AGGATGACGAGGCTAGGTACATTTGCGGCGGATGGACGAGTGATGATGGAAGAATGAGTT 534
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      GTGGATATTCGAGTTTTAGAGGAAAAAGAGCAAGCATGGAAGACTTCTATGATATAAAAT 960
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GTGGATACTCAAGCTTTAGAGGGAGAAGAGCAAACATGGAAGACTTCTATGACATAAAAT 594
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CATCTAAAATTGATGATAAACAAATAAGCCTCTTTGGAATATTTGATGGTCATGGTGGTT 1020
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      CATCAAAAGTTGATGATAACCAAATAAACCTCTTTGGAATATTTGATGGTCATGGTGGTT 654
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      CACGTGCTGCTGAGTATTTGAAGGAGCACTTGTTTGAGAACCTCATGAAACATCCAGAGT 1080
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      CACATGCTGCTGAGCATTTAAAGAAGCACT---TTGAAAATCTTCTGAAACATCCGTCAT 711
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      TCATGACAAATACAAAATTAGCAATAAGC-------GAAACATATAAAAAAACTGATTCA 1133
consensus_10963#3      -------------------------------------------------------ATTCA 5
consensus_10963#1      TCATCACTGATACAAAATCAGCAATAAGTATGATGTGAGACCTACAGAAAAACTGACTCT 771
consensus_10963#2      ------------------------------------------------------------
                                                                                   

consensus_10963#0      GAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGACAGCG 1193
consensus_10963#3      GAGTTTTTGGATTCTGAAAGCCACACTCATAGAGATGATGGATCAACCGCATCGACAGCG 65
consensus_10963#1      GATTTCTTGGATGCTGAGACTAATATTAATAGAGAGGATGGGTCAACTGCATCAACAGCA 831
consensus_10963#2      ----------ATGCTGAGGCTAATATTTATAGAGAGGATGGGTTAAATGCATCAACAGCA 50
                                 ** ****     * * * ******* ***** * **  ***** ***** 

consensus_10963#0      GTTTTGGTTGGAAATCATCTCTATGTGGCAAATGTTGGCGACTCTCGTGCTGTAATATCA 1253
consensus_10963#3      --TTTGGTTGGAAATCATCTCTAT-TGGCAAATGTTGGCGAC-CTCGTGCTGTAATATCA 121
consensus_10963#1      ATTTTCGTTGGTAACCATATCTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCA 891
consensus_10963#2      ATTTTCGGTGGTAACCATATTTATGTGGCAAATGTTGGTGACTCACGAACTGTGATGTCA 110
                         *** * *** ** *** * *** ************* *** * **  **** ** ***

consensus_10963#0      AAGGCTGGCAAAGCTATTGCACTCTCTGAGGATCACAAGCCAAATAGAAGCGATGAGAGG 1313
consensus_10963#3      AAGGCTGGCAAACTAATTGCACCCT--GAGGATCACAAGCCAAATG--AGCGATGAGAGG 177
consensus_10963#1      AAGGCTGGCAAAGCTATTGCACTCTCTAGTGATCACAAACCAAATAGAAAAGATGAGCGG 951
consensus_10963#2      AAGGCTGGCAAAACTATTGCACTCTTTAGTGGTCCCCAACCAAATAGAAAAGATTAGCGG 170
                       ************   ******* **     * ** * * ******   *  *** ** **

consensus_10963#0      AAGCGAATTGAGAGTGCTGGTGG---GGTTGTTATGTGGGCTGGAACTTGGAGGGTAGGT 1370
consensus_10963#3      AAGCGAATTGAGAGTCTCGGTGGTCTGGTGGGTGTATTGGCTG----------------- 220
consensus_10963#1      AAACGGATTGAGAATGCTGGAGG---GGTTGTGACATGGTCTGGGACATGGAGGGTTGGT 1008
consensus_10963#2      AAACGGATTTAGAATGCTGGAGG---GGTTGTGACATGGTTTGGGACATGGAGGGTTGGT 227
                       ** ** *** *** *   ** **   *** *     * *  **                 

consensus_10963#0      GGTGTACTTGCAATGTCTCGGGCATTTGGCAACCGCTTGTTGAAGCAATTTGTTGTTGCA 1430
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GGTGTACTAGCAATGTCTCGGGCTTTTGGTAATCGTTTCTTGAAGCGATTCGTTGTTGCT 1068
consensus_10963#2      GGTGTACTAACAATGTTTCGGGCTTTTGGTAATCGTTTTTTGAAACGATTTGTTGTTTCT 287
                                                                                   

consensus_10963#0      GATCCTGAGATTCAGGAACAAGAAATAGATGATGAATTGGAGTTTCTGATTTTAGCTAGT 1490
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GAGCCTGAGGTCCAGGAACAAGAAATAGATGATGATTTGGAGTTTCTGATTTTGGCTAGT 1128
consensus_10963#2      GAGCCTTAGGTCCCGGAACAAAAAATAGATGATGATTTGGAGTTTTTGATTTTGGCTAAT 347
                                                                                   

consensus_10963#0      GATGGGCTGTGGGATGTGGTTCCGAATGAGGATGCTGTTTCACTCGTGAAGATTGAGGAG 1550
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GATGGGCTGTGGGATGTGGTGTCCAATGAGCATGCCGTTGCATTTGTAAAGGCGGAGGAG 1188
consensus_10963#2      GATGGGCTGTGGGATGTGGTGTTCAATTAGCAAGCCCTTGCCTTTGTAAAGGCGGAGGAG 407
                                                                                   

consensus_10963#0      GAACCTGAGGCAGCAGCTCGGAAGCTGACAGAGACTGCATTTTCCCGAGGGAGTGGTGAC 1610
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GGCCCTGAGGCCGCAGCCCGGAAGCTGGCAGAGATTGCTTTTGCCCGTGGAAGCACCGAC 1248
consensus_10963#2      GGCCCTTAGGCCGCAACCCGGAAACTGGCAAAGATTGCTTTTGCCCGTGGAAGCCCCGAC 467
                                                                                   

consensus_10963#0      AATATCACATGCATTGTCGTGAAATTTCAACATGACAAGATGGACGGTGATTCCTCACCA 1670
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      AATATAACATGCATCGTTGTAAAATTTCTCCATGCTAAGATGGCCGTAGATGCTGCCTCG 1308
consensus_10963#2      AATATAACCTGCATCGTTGTAAAATTTTTCCCTGCTAAAATGGCCGTAGGTGCTGCCTTG 527
                                                                                   

consensus_10963#0      ACAAGCGATAAAAGCTGATTCCATTTGTTGTTTGTTATACATGTTGTCGGTCGTTTAACT 1730
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      TCTAGTGAGCGAAGTTGATTTCTTCTGTTCTATTTC--------TCTTGTTCATTTTA-- 1358
consensus_10963#2      TTTGGTGAACGAAATTGATTTTTTCTGTTCTATTTC--------TCTTGGTCCTTTTA-- 577
                                                                                   

consensus_10963#0      TCAGCTGGATTTTCCCGGCTTCATATGGTCCCTACAATGGCGTAGCTGGTACTAAAGACT 1790
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      TCATCTTAATCTGGAGTGCT------GGCATCAATCACGGTGCAACCTTAACTATTGGGC 1412
consensus_10963#2      TCATTTTAATTTGGAGGGCT------GGCATCAATCCCGGTGCAACCTTAACTATTGGGG 631
                                                                                   

consensus_10963#0      CGCTTCATGTTCGCCTGTCTATATATCCCTAATTTTGGTGCCTCTGGTGGTTTACAAGTT 1850
consensus_10963#3      ------------------------------------------------------------
consensus_10963#1      GTTTATATATTTGTTTGTTC---------------------------------------- 1432
consensus_10963#2      GGTTATATATTTGTTTGTTCCTTGAAAAAAAAAAAAAAAAAAAAAA-------------- 677
                                                                                   

consensus_10963#0      GGTATTGCTATCTATACTT 1869
consensus_10963#3      -------------------
consensus_10963#1      -------------------
consensus_10963#2      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)