These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1350 fasta sequence [GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCGCTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACCCTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTCGCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCCAGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGGATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCGGGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTAGGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACCCAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTTCAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCAAGT] [+] EMBL AK072311 [GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCGCTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACCCTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTCGCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCCAGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGGATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCGGGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTAGGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACCCAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTTCAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCAAGT] consensusID : consensus_10965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence [TCGGCACGAGGGANCTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG-TTGTTCGGAAA-AATCCTGTA-CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCA] [-] EMBL CB682765 [TCGGCACGAGGGANCTAATGGAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACCA] [+] EMBL CB682764 [ GAGAAGACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAAATGAACC ] [+] EMBL AA750882 [ AGAAGATGCTGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAACGTTGCTGTGCAAACGTTTGTTCGGAAA AATCCTGTACCTTATCAGA ] [+] EMBL AA751423 [ TGAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAACGTTGCTGTGCAAACG TTGTTCGGAAA AATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATG ] [+] EMBL BQ907825 [ GAAATAATCCTGTA CTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCNAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGTTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTaaaaaa ] [+] EMBL AK104019 [ CAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTT ] [+] EMBL AU031204 [ GAGTCATTAGAGAAGATGGTCGATGATTCTGAACTGGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTCTATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAAAGCGAGAATGCTGATTGAATTAATTATACATATTTNAAGTTTTTGTTTCGACTTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10965#0 GCCCTAATCGTCGCCACCCCGCCCGCCTCCATGGCGACCGCCACCTCCTTCTTCCAGCCG 60 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 CTCACGACCCCCATCGCCGGCGCCGGCGCCGGCGGTGCCGCCCGGCTCCGTCGCGGGACC 120 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 CTCGCACTGCCCTTCCCCACCCGCACGAGGCCTCTCCGGCGGCCGACGCCCCTCCTCGTC 180 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 GCGCGGGCCAAGCGCCCCGGCAGCCGGACCGCGGCGGCCTCGAGGCAGCCCGCGAACCCC 240 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 AGCGACGTGCCGAAGCGGGAGGCGGACGAGGAGGTGGAGGTGGAGGAGGAGATGCCCTGG 300 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 ATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATACCG 360 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 GGGCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCGCTTGCCTACGTA 420 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 GGCGTGTCGTTTGTGCTCGCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCACC 480 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 CAGAAGAAGCGAAGGGTGAGCAAGAATATTTTTTTGCTGAAGTCACTAGATGAGTTGTTT 540 consensus_10965#1 ------------------------------------------------------------ consensus_10965#0 CAGAAGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGACAGGA 600 consensus_10965#1 ---------------------------TCGGCACGA-GGGANCTAATGGAGAAGACAGGA 32 * ** * ** ****************** consensus_10965#0 TTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTC 660 consensus_10965#1 TTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTC 92 ************************************************************ consensus_10965#0 AACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCT 720 consensus_10965#1 AACCCTGATGTAGTCGTGGATCTCATACATCTTAGGAAAGCGTCAATGTTAGAAGATGCT 152 ************************************************************ consensus_10965#0 GAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTA 780 consensus_10965#1 GAAGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGGACCAGTA 212 ************************************************************ consensus_10965#0 GTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG 840 consensus_10965#1 GTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACG 272 ************************************************************ consensus_10965#0 TTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCCGAGTTCTGCTCACGCGATGGCTCA 900 consensus_10965#1 TTGTTCGGAAAAATCCTGTACTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCA 332 *********************************** ************************ consensus_10965#0 CTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCAC 960 consensus_10965#1 CTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGATGCAGACAGCATTAGGATTCAC 392 ************************************************************ consensus_10965#0 ATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTG 1020 consensus_10965#1 ATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACTG 452 ************************************************************ consensus_10965#0 GGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCT 1080 consensus_10965#1 GGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCT 512 ************************************************************ consensus_10965#0 TGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTC 1140 consensus_10965#1 TGGTGGATAGCTGGTGCTGCTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTC 572 ************************************************************ consensus_10965#0 AGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTC 1200 consensus_10965#1 AGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTGTGGCAGTATCTCCAACCTTTC 632 ************************************************************ consensus_10965#0 TATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAA 1260 consensus_10965#1 TATTATTACTTGAGCTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACAA 692 ************************************************************ consensus_10965#0 AGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTC 1320 consensus_10965#1 AGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTC 752 ************************************************************ consensus_10965#0 CTTGTCTCTTCTGGAGGAAATGAACCAAGT 1350 consensus_10965#1 CTTGTCTCTTCTGGAGGAAATGAACCA--- 779 *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||