These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 702 fasta sequence [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT-GGACAGATGATATTGTTAGATTATT-GGGACCTATAAC-TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTTTGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA] [+] EMBL AK105123 [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT GGACAGATGATATTGTTAGATTATT GGGACCTATAAC TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCT ] [+] EMBL C29059 [CTCGTCTCCGCTCCTTGCGCCTGCNCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGANATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGNGGGACTCTTCTTNGGACAGATGATATTGTTAGATTATTGGGGGCCTATAACTTTTGAAGTTGTACTGNCAT ] [+] EMBL C97104 [CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGTTTTTNAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGNGGGACATTGGAC ] [+] EMBL AU160854 [ GACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTT GGACAGATGATATTGTTAGATTATT GGGACCTATAAC TTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTTTGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA] [+] EMBL AA750203 [ GAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTTCCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTTGTCCTGTGCAAGTGCTCTTATGGAGTTTCAA ] consensusID : consensus_10969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 614 fasta sequence [AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC-CGNA-TCTCCG-TCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCT-TCTTGGACAGATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTAC-TGACATTGTTATGTGTACTGNA-GTCAA-GGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCA-CCCNAGCAGCGCAAAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAAGGTGCAAAAAAAAAA] [+] EMBL OSC9151 [AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC CGNANTCTCCG TCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGANCAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTTGATCGCGGG CATTGG NCTGATTATACCG CTA CCCAAGAAGTGATCTATCTATCC AAAATCAGAGGG CTNTCTTGG CAGATGATATTG TAGA TATTGGGacnat ] [+] EMBL AU032911 [ ACTCCCGTCTCGTCTCNGCTACTTGCGCCTGCGCCGA TCTCCGTTCTCGCGAGCAGAATCCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATGGATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCANGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTAACTCCACAGG TACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCT TCTTGGANAGATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTAC TGACATTGTTATGTGTACTGNA GTCAA GGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCA CCCNAGCAGCGCAAAAACCAGCAGTGAATAATTA ] [+] EMBL AU161206 [ AAGGCACGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCT TCTTGGACAGATGATATTGTTAGATTATT GGGACCTATAACTTTGAAGTTGTACTTGACATTGTTATGTGTACTGTAGGTCAAGGGATTGGGGCTTCCAGACTTTT GAATGTTCATGCACCCACCCCAAGCAGCGC AAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAAGGTGCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10969#0 ----------CTCGTCTCCGCTCCTTGCGCCTGCGCCGATCTCCGTCTCGCGAGCAGAAT 50 consensus_10969#1 AAACTCCCGTCTCGTCTCCGCTCCTTGCGCCTGC-CGNATCTCCGTCTCGCGAGCAGAAT 59 ************************ * ********************** consensus_10969#0 CCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGG--------------- 95 consensus_10969#1 CCAGAGCAAGGGGAAGCCGCCGTCGTCCGTCCTGCTGCATCCTGGAATTACTTGCGAATG 119 ********************************************* consensus_10969#0 --------------------------------TTTTTNAGTCAAGCACATGTCCAAGGCA 123 consensus_10969#1 GATGGCATAGATATAGTATTTTCACTGCTAGGTTTTTGAGTCAAGCACATGTCCAAGGCA 179 ***** ********************** consensus_10969#0 CGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCA 183 consensus_10969#1 CGGAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCA 239 ************************************************************ consensus_10969#0 TTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCA 243 consensus_10969#1 TTCTATTTTGTGAAATCAAAGAACAAACCCATCATTGATTCATCAAAGCCTCTACCTCCA 299 ************************************************************ consensus_10969#0 CAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTAT 303 consensus_10969#1 CAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGGGACATTGGACCTGATTAT 359 ************************************************************ consensus_10969#0 ACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTTGGACAG 363 consensus_10969#1 ACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGANTCTTCTTGGACAG 419 ********************************************** ************* consensus_10969#0 ATGATATTGTTAGATTATTGGG-ACCTATAACTTTGAAGTTGTACTGACATTGTTATGTG 422 consensus_10969#1 ATGATATTGTTAGANTATTGGGGACCTATAACTTTGAAGTTGTACTGACATTGTTATGTG 479 ************** ******* ************************************* consensus_10969#0 TACTGTAGTCAAGGATTGGG-CTTCCAGACTTTTG-AATGTTCATGCACCCACCCAAGCA 480 consensus_10969#1 TACTGNAGTCAAGGATTGGGGCTTCCAGANTTTTGGAATGGTCATGCACCCACCCNAGCA 539 ***** ************** ******** ***** **** ************** **** consensus_10969#0 GCGCAAAA-CCAGCAGTGAATAATTATTT-CCAGTTGGG-ACTGTCTT-GTCCTGTGCAA 536 consensus_10969#1 GCGCAAAAACCAGCAGTGAATAATTATTTTCCAGTTNGGGNCTNTCTTTGTCCTGTGCAA 599 ******** ******************** ****** ** ** **** *********** consensus_10969#0 G-TGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATAGGTTTACTATATATTATCTTT 595 consensus_10969#1 GGTGCAAAAAAAAAA--------------------------------------------- 614 * *** * * consensus_10969#0 TGTTAGTTCATGGAATTTATTTTAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACA 655 consensus_10969#1 ------------------------------------------------------------ consensus_10969#0 CCATTACAGTTTCAAACAAAGTGCTGGTTTTCATTTTCTTTTAAAAA 702 consensus_10969#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||