|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1224 fasta sequence
[CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAGGGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTGCCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA-ATGCCGGTCTCTCCGAGATGATATATGCTTGT-GGCCGGCTTTTTCTATGC-TTGTATTTGAGTTTTAT-AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG-TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGTGCATTGTCTGAAAAAAAAAA]
[+] EMBL AK068931 [CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAGGGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTGCCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGT ]
[+] EMBL BP184969 [ acGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGACCCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTGGCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCTTTTCCGCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCGGGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATGGCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATG ]
[+] EMBL BI799343 [ CGATGAGAGAGGTAACAAAAGGTCCCC TGGCCTGGCAAATTGTGCCAGCTGCAACCAATGATGTT AACGGAATCGTCGA GCAACAGGTGTCGA CAGCACAATTCTGCAGTCGAGGA GCCGTTTCTGCTGCAAAT GCCCTGAATC CCGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCCATC ACCATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCACATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCGTTTGATTTACAGGTGACCCTGGGCCAACAGGCAGGTTAATTTC CAAaaaaaaaa ]
[+] EMBL OSC4631 [ ATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGTGGGCCGGCTTTTTCTATGCTTTGTATTTGAGTTTTATAAGCTTTGCCTTTNGCAG ]
[+] EMBL AU165810 [ TGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCA ATGCCGGTCTCTCCGAGATGATATATGCTTGT GGCCGGCTTTTTCTATGC TTGTATTTGAGTTTTAT AGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCG TTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGTGCATTGTCTGAAAAAAAAAA]
consensusID : consensus_10970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[AAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGTGGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCG]
[+] EMBL BP184547 [AAGATCCGGTATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCATCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAATTGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGTGCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGTGGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAATGGACGAGTTCAGCTTGAGCG]
[+] EMBL C93630 [ ATGTGGACTTATGTGGGCAAACAAGCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNCTGCAAATGGCCATGANTCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCANACTTGAGAAAAAGGAGGAGGATGCGTATCANTCAACANTCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTNTGATATGACCGGCTCTAGGATTCATG ]
consensusID : consensus_10970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence
[GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNTGCAAATGGCCATGAATCGCAGTCGGGAGTGCGTGATGCTTGAGGGTTAGACTTGAGAAAGAGAGATNTACATACATAG]
[+] EMBL AA750091 [GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTNTGCAAATGGCCATGAATCGCAGTCGGGAGTGCGTGATGCTTGAGGGTTAGACTTGAGAAAGAGAGATNTACATACATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10970#0 CGGTACGAGCAGGAGCAGGAGTACGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGTACGAG 60
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GGCGGGGAGGGGGTCCCCATGGACGCCGACGCCTCCGCCGCGGCCGTGGCGGGGATGGAC 120
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 CCGCACGGGGAGATGGTGCCCGTGGCCGGCGGGGAGGCGGGCGGCGGCTACCCGCACGTG 180
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GCGTCGAACACCCTCACGCTGTCGTTCCAGGGCGAGGTCTACGTCTTCGAGTCCGTTTCC 240
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GCCGAGAGGGTGCAAGCTGTGCTGTTACTGCTTGGAGGAAGAGAGCTAGCACCAGGGTCG 300
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GGTTCGGTACCATCATCTTCAGCGGCATACAGTAAGAAGATGAATTTTCCTCACCGGATG 360
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GCATCATTGATGAGGTTCCGGGAAAAGAGAAAAGAGAGAAACTTTGATAAGAAGATCCGG 420
consensus_10970#1 ---------------------------------------------------AAGATCCGG 9
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 TATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCA 480
consensus_10970#1 TATACTGTTAGGAAGGAAGTTGCACTTAGGATGCAGCGTAATAGAGGCCAGTTTACATCA 69
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 TCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAAT 540
consensus_10970#1 TCAAAATCGAAGGCTGAAGAAGCAACATCCGTCATAACTAGTTCGGAAGGTTCGCCAAAT 129
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 TGGGGCGCAGTTGAAGGTCGACCTCCATCAGCTGCTGAGTGCCATCATTGTGGTATTAGT 600
consensus_10970#1 TGGGGCGCAGTTGAAGGTCGACCTCCATCANCTGCTGAGTGCCATCATTGTGGTATTAGT 189
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCA 660
consensus_10970#1 GCAGCGTCAACACCTATGATGCGCCGTGGTCCTGATGGCCCAAGAACATTGTGCAATGCA 249
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 TGTGGACTTATGTGGGCAAACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTG 720
consensus_10970#1 TGTGGACTTATGTGGGCAAACAAG------------------------------------ 273
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 CCCTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACA 780
consensus_10970#1 ------------------------------------CAGAACGGAATCGTCGAGGCAACA 297
consensus_10970#2 ------------GTGCNAGCTGCAACCAATGATGTTCAGAACGGAATCGTCGAGGCAACA 48
************************
consensus_10970#0 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAA 840
consensus_10970#1 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGAA 357
consensus_10970#2 GGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTN-TGCAAATGGCCATGAA 107
****************************************** ****************
consensus_10970#0 TCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGC 900
consensus_10970#1 TCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGC 417
consensus_10970#2 TCGCAGTCGGGAGT-GCGTGATGCTTGAGGGTT-AGACTTGAGAAAGAG-AGATNTACAT 164
************** ****************** ************ ** ** *
consensus_10970#0 GTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGA 960
consensus_10970#1 GTATCAATCAACAATCAAGTAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGA 477
consensus_10970#2 ACATAG------------------------------------------------------ 170
**
consensus_10970#0 CCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGT 1020
consensus_10970#1 CCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTCTCCGAGATGATATATGCTTGT 537
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 GGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAA 1080
consensus_10970#1 GGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAAA 597
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 TGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGT 1140
consensus_10970#1 TGGACGAGTTCAGCTTGAGCG--------------------------------------- 618
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 AATCGTTGATTTACAGGTGACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCAT 1200
consensus_10970#1 ------------------------------------------------------------
consensus_10970#2 ------------------------------------------------------------
consensus_10970#0 CAGTGCATTGTCTGAAAAAAAAAA 1224
consensus_10970#1 ------------------------
consensus_10970#2 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||