These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1448 fasta sequence [CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCAGCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA-TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG-TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA-CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCA-AGGAAATAATACAATCAACTTTTGAAAAAAAA] [+] EMBL AK107615 [CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCAGCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCA AGGAAATAATACAATCAAa ] [+] EMBL C99374 [ ATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAGTCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCTGTTGCATATNGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCTTGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTGGAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGACAGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAA TCAGGTGGAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTAAACCCGCACTTGTGAAGCAAGTTCTGCAG TAATTCCAAGTCAAGNCGAGCAAANGCA ] [+] EMBL C99373 [ AACAACGATGTTGATCAGATGGAGTTGGACGAAGACAAGATTTGGAATTCAGNTGGAGATTGAGGAGNTGAATGATCAGCAGCAACCAGTTGACCACAAGTTGGACCAAATTGGTGATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAGATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAATGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAGAGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTNGTTCCAAGTCAGGCCGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGTGAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTGCCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAAAA ] [+] EMBL AU174497 [ TTAGGTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATG ] [+] EMBL BI803574 [ CAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC AGCGCCGTACC AGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGATGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAA CCTTGTGATGTTTATCAGACATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCACAGGAAATAATAC ATCAACTTTTGAAAAAAAA] [+] EMBL BI803958 [ gcaAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGT CAGTTCTCGAAGATGATGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGG TTGTCTGTGGGACAGTTTCAGTTTACCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCCTTGTGATGTTTATCAGACATAATTTC GGTTGTTAAATTTAGTGATGGTGGTCC AGGAAATAATACAATCAACTT ] consensusID : consensus_10979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence [GCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGACATAAAAAAAAAAAGAAAAAAAA] [+] EMBL AU174498 [GCAGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATGTATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGACATAAAAAAAAAAAGAAAAAAAA] [+] EMBL AA749737 [ CAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGA NNCGAAGACTATACCGTTGGTGGTGCCAGCAAGCG CGTACCAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10979#0 CCTACCGCCTCCAGATCCCACCCTCTCGCCACCGCGACGCTTGCCGGAGGTTCGGTTCCA 60 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GCCATGCGGATCCGGAGGAACGCCTCCAGGGTGCTCGGGTCAGCCTACTTCACCACACAG 120 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 TCGGAAGCATCACGCGCATATATGAGCAACCTCCCACCGACATCGTCCGCGCCTGCGCCT 180 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GTTGCATATGGCGGCGGCGGCGGCGATCTTGGTGGTCCTATGGTCACTCCAGACGATGCT 240 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 TGCCAGCTAAGCCTGTCGCCATGGGATCTGCCATATGAGCTCGAAGATCCTGATCCCCTG 300 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GAGGCTCCGTTCGACAGGTACATGGCGTGCATCCCTTTTAGGGCAAGCTTTGTGTCCGAC 360 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 AGCGACAACAACGATGATGATCAGATGGAGGTGGACGAAGACAAGAGTTGGAATCAGGTG 420 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GAGAATGAGGAGGTGAATGATCAGCAGCAACCAGCTGACCACAAGGTGGACCAAAGTGGT 480 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GATCCGGCAGCCAGAAAGATGAAGGGGAAGATGAACGAGAGCAGCATGGTGGTGATGGAG 540 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 ATGCAAGATGCTGACAAGCAGGCTGGTGTTTGGTACTGCAACAAGAATGATGGCAAGAAA 600 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 TGGCACTGCCGAAACATCGTCGACGGGCCCAAGACCCTGTGTGACTACCACCTAGCAAAG 660 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 AGCCGCTCTTACTACACCCGCACTGGTGAGGCAGGTGCTGCAGCTAGTTCCAAGTCAGGC 720 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 CGAGCAAAGGCACCAGCTATTGCCAAGCCAAAGTCCAGTTCCAAACGAACTCCAGCAGGT 780 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GAGTCAAGTGCTCAAAACAACTCTATTGCAGCAGCAGCAGCAGCAGCAGTGAGTGTGCTG 840 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 CCAACCATCTCCTCCCAGCCATCCAAGAGGAAGGCAAGCAATGGCTTATTAGGTGGTGAT 900 consensus_10979#1 ------------------------------------------------------------ consensus_10979#0 GCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGC 960 consensus_10979#1 ----------------------------------------------------------GC 2 ** consensus_10979#0 AGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCC 1020 consensus_10979#1 AGCAAACAGCAAGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCC 62 ************************************************************ consensus_10979#0 ATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTAC 1080 consensus_10979#1 ATGGAAGAGAAAATGGACGGCAAGAAACTGTACGATGGTGTTTACAACTCGTCTGATTAC 122 ************************************************************ consensus_10979#0 TCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC 1140 consensus_10979#1 TCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGTGGTGCCAGC 182 ************************************************************ consensus_10979#0 AAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAG 1200 consensus_10979#1 AAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAG 242 ************************************************************ consensus_10979#0 ATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTC 1260 consensus_10979#1 ATGACGAAGAAGCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTC 302 ************************************************************ consensus_10979#0 GATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATG 1320 consensus_10979#1 GATCGGTTGTCTGTGGGACAGTTTCAGTTTAGCCGTGTTGTCGCTTAATGGCATATCATG 362 ************************************************************ consensus_10979#0 TATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGAC 1380 consensus_10979#1 TATGGATTTAAGACGTGTACCGTTTAAATAAATGTTTGAACCTTGTGATGTTTATCAGAC 422 ************************************************************ consensus_10979#0 ATAATTTCGGGTTGTTAAATTTAGTGATGGTGGTCAAGGAAATAATACAATCAACTTTTG 1440 consensus_10979#1 ATAAAAAAAAAAAGAAAAAAAA-------------------------------------- 444 **** * *** consensus_10979#0 AAAAAAAA 1448 consensus_10979#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||